Wall clock time and date at job start Wed Apr 1 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47324 * 2 1 4 4 O 1.42893 * 109.46742 * 239.99868 * 2 1 3 5 5 C 1.42901 * 114.00075 * 90.00666 * 4 2 1 6 6 C 1.50699 * 109.47251 * 179.97438 * 5 4 2 7 7 C 1.38647 * 120.79268 * 89.99926 * 6 5 4 8 8 C 1.38203 * 119.16230 * 179.97438 * 7 6 5 9 9 N 1.31866 * 120.76535 * 359.97438 * 8 7 6 10 10 C 1.31875 * 121.72889 * 359.97438 * 9 8 7 11 11 C 1.38206 * 120.75778 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.47027 * 120.00082 * 2 1 3 13 13 O 1.21276 * 119.99932 * 119.99739 * 12 2 1 14 14 N 1.34781 * 120.00071 * 300.00031 * 12 2 1 15 15 C 1.47424 * 125.64533 * 355.05061 * 14 12 2 16 16 C 1.54911 * 104.83005 * 204.09329 * 15 14 12 17 17 C 1.55153 * 101.58190 * 322.99067 * 16 15 14 18 18 C 1.47015 * 125.64694 * 174.74267 * 14 12 2 19 19 H 1.09004 * 109.88191 * 59.56492 * 18 14 12 20 20 C 1.52990 * 109.88702 * 298.39514 * 18 14 12 21 21 N 1.46503 * 109.47414 * 174.90564 * 20 18 14 22 22 C 1.46497 * 119.99996 * 274.69622 * 21 20 18 23 23 C 1.36940 * 119.99722 * 94.69139 * 21 20 18 24 24 H 1.07997 * 120.00607 * 352.41814 * 23 21 20 25 25 C 1.38814 * 119.99345 * 172.41894 * 23 21 20 26 26 N 1.31613 * 120.00461 * 5.73323 * 25 23 21 27 27 Si 1.86808 * 119.99577 * 185.73188 * 25 23 21 28 28 H 1.48505 * 109.47010 * 89.99999 * 27 25 23 29 29 H 1.48493 * 109.46960 * 209.99780 * 27 25 23 30 30 H 1.48497 * 109.47234 * 330.00356 * 27 25 23 31 31 H 1.09000 * 109.47324 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46658 * 300.00156 * 1 2 3 33 33 H 1.08998 * 109.46866 * 59.99628 * 1 2 3 34 34 H 1.09002 * 109.47280 * 59.99401 * 5 4 2 35 35 H 1.09002 * 109.46691 * 299.99605 * 5 4 2 36 36 H 1.07994 * 120.41744 * 359.95032 * 7 6 5 37 37 H 1.07999 * 119.61717 * 179.71887 * 8 7 6 38 38 H 1.08001 * 119.62055 * 180.02562 * 10 9 8 39 39 H 1.08003 * 120.41513 * 180.02562 * 11 10 9 40 40 H 1.09002 * 110.36939 * 322.93654 * 15 14 12 41 41 H 1.09006 * 110.36608 * 85.14983 * 15 14 12 42 42 H 1.08991 * 111.00372 * 81.06806 * 16 15 14 43 43 H 1.08998 * 111.00433 * 204.92160 * 16 15 14 44 44 H 1.09005 * 110.71971 * 153.86412 * 17 16 15 45 45 H 1.09001 * 110.72318 * 276.96049 * 17 16 15 46 46 H 1.09003 * 109.47183 * 294.90760 * 20 18 14 47 47 H 1.09002 * 109.47373 * 54.90380 * 20 18 14 48 48 H 1.08995 * 109.47106 * 4.09129 * 22 21 20 49 49 H 1.08998 * 109.47254 * 124.10044 * 22 21 20 50 50 H 1.09010 * 109.46611 * 244.10124 * 22 21 20 51 51 H 0.97002 * 119.99847 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7014 -0.6283 -3.4610 7 6 1.8147 -1.2091 -4.3547 8 6 2.3113 -1.9457 -5.4134 9 7 3.6107 -2.0982 -5.5784 10 6 4.4830 -1.5594 -4.7489 11 6 4.0604 -0.8088 -3.6682 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 0.9577 0.9883 2.7355 16 6 1.3729 1.3851 4.1743 17 6 1.4883 -0.0023 4.8590 18 6 2.0342 -0.9027 3.7306 19 1 3.1152 -1.0029 3.8291 20 6 1.3730 -2.2809 3.7949 21 7 1.8024 -2.9723 5.0130 22 6 3.0534 -3.7345 5.0204 23 6 1.0344 -2.9059 6.1448 24 1 0.1789 -2.2476 6.1792 25 6 1.3555 -3.6847 7.2481 26 7 2.4596 -4.4010 7.2491 27 14 0.2204 -3.7161 8.7314 28 1 -0.7790 -4.8021 8.5670 29 1 1.0182 -3.9594 9.9600 30 1 -0.4802 -2.4119 8.8463 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.9320 0.9513 -2.0450 35 1 1.2538 0.6547 -2.5588 36 1 0.7495 -1.0878 -4.2249 37 1 1.6271 -2.4051 -6.1114 38 1 5.5398 -1.7058 -4.9166 39 1 4.7797 -0.3698 -2.9926 40 1 1.2391 1.7702 2.0302 41 1 -0.1152 0.8021 2.6863 42 1 2.3323 1.9024 4.1754 43 1 0.6027 1.9925 4.6497 44 1 2.1860 0.0373 5.6956 45 1 0.5103 -0.3514 5.1906 46 1 0.2894 -2.1638 3.8063 47 1 1.6660 -2.8655 2.9228 48 1 3.5586 -3.6129 4.0622 49 1 3.6974 -3.3682 5.8198 50 1 2.8349 -4.7898 5.1845 51 1 2.6838 -4.9456 8.0199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700359633.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:20 Heat of formation + Delta-G solvation = -1.613524 kcal Electronic energy + Delta-G solvation = -30916.284272 eV Core-core repulsion = 26817.367524 eV Total energy + Delta-G solvation = -4098.916748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.52981 -40.15534 -38.34276 -36.93152 -35.32312 -33.76168 -32.27649 -31.49527 -31.40353 -30.53020 -28.83841 -27.20593 -25.87840 -25.41128 -24.49554 -23.75391 -22.43017 -22.22504 -21.27864 -20.39030 -18.72868 -17.70990 -17.02843 -16.86510 -16.71673 -16.50448 -15.91209 -15.84924 -15.48903 -15.11247 -14.70113 -14.13200 -14.01593 -13.89067 -13.79163 -13.62020 -13.37048 -13.20340 -13.00898 -12.74764 -12.66025 -12.37750 -12.33171 -11.98807 -11.80627 -11.75878 -11.47494 -11.14266 -10.97886 -10.88709 -10.74537 -10.42870 -10.29069 -10.18930 -10.08250 -10.03697 -9.78800 -9.77611 -9.70418 -9.42639 -9.29896 -8.59452 -8.34250 -6.82137 -5.58723 -3.01813 0.83164 0.86220 2.69930 2.85907 3.39859 3.43646 3.46307 3.47329 3.80232 4.18921 4.30375 4.36038 4.48956 4.53465 4.62580 4.71050 4.72477 4.78465 4.83736 4.96598 5.01585 5.03748 5.08389 5.31354 5.33393 5.42548 5.46888 5.48326 5.49200 5.62067 5.65076 5.69313 5.78860 5.89903 5.93700 5.99952 6.03956 6.30766 6.33935 6.39378 6.54428 6.62613 6.77830 6.80912 6.96358 7.00796 7.67895 7.70871 7.75595 7.79258 8.02330 8.38466 8.44763 9.32454 9.95815 10.41021 11.40538 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002251 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.491406 B =12436.137318 C =13354.420690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.083 0.917 4 O -0.347 6.347 5 C 0.099 3.901 6 C -0.043 4.043 7 C -0.151 4.151 8 C 0.095 3.905 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.149 4.149 12 C 0.525 3.475 13 O -0.513 6.513 14 N -0.611 5.611 15 C 0.097 3.903 16 C -0.138 4.138 17 C -0.108 4.108 18 C 0.116 3.884 19 H 0.069 0.931 20 C 0.150 3.850 21 N -0.606 5.606 22 C 0.170 3.830 23 C -0.242 4.242 24 H 0.073 0.927 25 C -0.006 4.006 26 N -0.916 5.916 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.045 0.955 47 H 0.046 0.954 48 H -0.007 1.007 49 H 0.042 0.958 50 H 0.040 0.960 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 16.422 -20.330 26.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 H 0.101 0.899 4 O -0.265 6.265 5 C 0.022 3.978 6 C -0.052 4.052 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.168 4.168 12 C 0.311 3.689 13 O -0.387 6.387 14 N -0.347 5.347 15 C -0.026 4.026 16 C -0.176 4.176 17 C -0.146 4.146 18 C 0.011 3.989 19 H 0.087 0.913 20 C 0.021 3.979 21 N -0.329 5.329 22 C 0.026 3.974 23 C -0.371 4.371 24 H 0.091 0.909 25 C -0.202 4.202 26 N -0.564 5.564 27 Si 0.736 3.264 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.012 0.988 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.965 15.013 -21.030 25.914 hybrid contribution -0.961 0.810 1.688 2.105 sum -2.926 15.823 -19.342 25.160 Atomic orbital electron populations 1.22339 0.93534 1.04257 1.03203 1.21885 0.95155 0.96017 0.85500 0.89923 1.88144 1.86617 1.33389 1.18389 1.21401 0.99973 0.91672 0.84745 1.19962 0.93709 0.96802 0.94692 1.22077 1.00992 0.98283 0.95757 1.22773 0.91983 0.95354 0.96093 1.67669 1.03403 1.19476 1.28695 1.22792 0.99751 0.93002 0.90492 1.22121 0.95884 0.99846 0.98990 1.19820 0.80973 0.85168 0.82926 1.90756 1.36445 1.25861 1.85607 1.48656 1.55993 1.24433 1.05657 1.22416 0.96352 0.86387 0.97468 1.22837 1.01795 0.98496 0.94429 1.22546 1.03037 0.91956 0.97061 1.22733 1.00459 0.95561 0.80157 0.91306 1.20986 0.96510 0.90290 0.90119 1.43991 1.23763 1.57417 1.07745 1.21026 0.85992 0.96129 0.94299 1.19284 1.07014 1.19634 0.91144 0.90882 1.24899 0.97670 0.99092 0.98574 1.70241 1.23606 1.32851 1.29694 0.86225 0.80039 0.77632 0.82458 1.21668 1.21837 1.20762 0.90855 0.90246 0.91522 0.91844 0.91766 0.84600 0.82562 0.82490 0.84519 0.91400 0.91189 0.91095 0.90201 0.89993 0.90166 0.93644 0.93524 0.98796 0.93943 0.94131 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.37 37.16 0.35 -1.24 16 2 C 0.08 0.86 2.52 -27.88 -0.07 0.79 16 3 H 0.08 0.70 7.41 -51.93 -0.38 0.32 16 4 O -0.35 -4.51 9.50 -55.14 -0.52 -5.03 16 5 C 0.10 0.87 5.92 36.01 0.21 1.08 16 6 C -0.04 -0.42 5.55 -104.32 -0.58 -1.00 16 7 C -0.15 -1.34 9.82 -39.44 -0.39 -1.73 16 8 C 0.09 0.88 11.18 -17.55 -0.20 0.68 16 9 N -0.48 -5.31 10.36 -13.25 -0.14 -5.44 16 10 C 0.10 0.93 11.18 -17.54 -0.20 0.74 16 11 C -0.15 -1.42 9.82 -39.44 -0.39 -1.81 16 12 C 0.52 8.47 6.99 -10.98 -0.08 8.40 16 13 O -0.51 -10.90 15.68 -14.35 -0.23 -11.13 16 14 N -0.61 -9.11 3.05 -163.01 -0.50 -9.61 16 15 C 0.10 1.01 5.29 -2.53 -0.01 1.00 16 16 C -0.14 -1.52 7.09 -24.58 -0.17 -1.70 16 17 C -0.11 -1.71 5.75 -24.89 -0.14 -1.86 16 18 C 0.12 2.12 3.09 -66.95 -0.21 1.91 16 19 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 20 C 0.15 3.27 5.07 -4.04 -0.02 3.25 16 21 N -0.61 -15.61 2.84 -181.12 -0.51 -16.13 16 22 C 0.17 4.53 8.99 59.85 0.54 5.07 16 23 C -0.24 -6.51 8.99 -15.06 -0.14 -6.64 16 24 H 0.07 1.87 7.05 -52.49 -0.37 1.50 16 25 C -0.01 -0.17 5.46 -17.43 -0.10 -0.27 16 26 N -0.92 -26.98 9.46 55.49 0.53 -26.46 16 27 Si 0.91 21.84 29.56 -169.99 -5.02 16.82 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.62 5.20 -51.93 -0.27 0.35 16 33 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 34 H 0.06 0.46 8.04 -51.93 -0.42 0.04 16 35 H 0.06 0.41 7.83 -51.93 -0.41 0.01 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.07 0.52 7.51 -51.93 -0.39 0.13 16 41 H 0.07 0.65 6.90 -51.93 -0.36 0.29 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.08 1.36 6.79 -51.93 -0.35 1.01 16 46 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 47 H 0.05 1.10 6.80 -51.93 -0.35 0.75 16 48 H -0.01 -0.17 7.89 -51.93 -0.41 -0.58 16 49 H 0.04 1.20 7.09 -51.93 -0.37 0.83 16 50 H 0.04 1.17 7.01 -51.92 -0.36 0.80 16 51 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 406.37 15.07 6.12 6.12 Total: -1.00 -35.34 406.37 -10.06 -45.40 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.20 Total: -1.22 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -1.58 Total: 6.68 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.62 Total: -57.64 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.75 Total: -16.16 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.34 -10.06 -45.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700359633.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.783 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds