Wall clock time and date at job start Wed Apr 1 2020 04:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47324 * 2 1 4 4 O 1.42893 * 109.46742 * 239.99868 * 2 1 3 5 5 C 1.42901 * 114.00075 * 90.00666 * 4 2 1 6 6 C 1.50699 * 109.47251 * 179.97438 * 5 4 2 7 7 C 1.38647 * 120.79268 * 89.99926 * 6 5 4 8 8 C 1.38203 * 119.16230 * 179.97438 * 7 6 5 9 9 N 1.31866 * 120.76535 * 359.97438 * 8 7 6 10 10 C 1.31875 * 121.72889 * 359.97438 * 9 8 7 11 11 C 1.38206 * 120.75778 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.47027 * 120.00082 * 2 1 3 13 13 O 1.21276 * 119.99932 * 119.99739 * 12 2 1 14 14 N 1.34781 * 120.00071 * 300.00031 * 12 2 1 15 15 C 1.47424 * 125.64533 * 355.05061 * 14 12 2 16 16 C 1.54911 * 104.83005 * 204.09329 * 15 14 12 17 17 C 1.55153 * 101.58190 * 322.99067 * 16 15 14 18 18 C 1.47015 * 125.64694 * 174.74267 * 14 12 2 19 19 H 1.09004 * 109.88191 * 59.56492 * 18 14 12 20 20 C 1.52990 * 109.88702 * 298.39514 * 18 14 12 21 21 N 1.46503 * 109.47414 * 174.90564 * 20 18 14 22 22 C 1.46497 * 119.99996 * 274.69622 * 21 20 18 23 23 C 1.36940 * 119.99722 * 94.69139 * 21 20 18 24 24 H 1.07997 * 120.00607 * 352.41814 * 23 21 20 25 25 C 1.38814 * 119.99345 * 172.41894 * 23 21 20 26 26 N 1.31613 * 120.00461 * 5.73323 * 25 23 21 27 27 Si 1.86808 * 119.99577 * 185.73188 * 25 23 21 28 28 H 1.48505 * 109.47010 * 89.99999 * 27 25 23 29 29 H 1.48493 * 109.46960 * 209.99780 * 27 25 23 30 30 H 1.48497 * 109.47234 * 330.00356 * 27 25 23 31 31 H 1.09000 * 109.47324 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46658 * 300.00156 * 1 2 3 33 33 H 1.08998 * 109.46866 * 59.99628 * 1 2 3 34 34 H 1.09002 * 109.47280 * 59.99401 * 5 4 2 35 35 H 1.09002 * 109.46691 * 299.99605 * 5 4 2 36 36 H 1.07994 * 120.41744 * 359.95032 * 7 6 5 37 37 H 1.07999 * 119.61717 * 179.71887 * 8 7 6 38 38 H 1.08001 * 119.62055 * 180.02562 * 10 9 8 39 39 H 1.08003 * 120.41513 * 180.02562 * 11 10 9 40 40 H 1.09002 * 110.36939 * 322.93654 * 15 14 12 41 41 H 1.09006 * 110.36608 * 85.14983 * 15 14 12 42 42 H 1.08991 * 111.00372 * 81.06806 * 16 15 14 43 43 H 1.08998 * 111.00433 * 204.92160 * 16 15 14 44 44 H 1.09005 * 110.71971 * 153.86412 * 17 16 15 45 45 H 1.09001 * 110.72318 * 276.96049 * 17 16 15 46 46 H 1.09003 * 109.47183 * 294.90760 * 20 18 14 47 47 H 1.09002 * 109.47373 * 54.90380 * 20 18 14 48 48 H 1.08995 * 109.47106 * 4.09129 * 22 21 20 49 49 H 1.08998 * 109.47254 * 124.10044 * 22 21 20 50 50 H 1.09010 * 109.46611 * 244.10124 * 22 21 20 51 51 H 0.97002 * 119.99847 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7014 -0.6283 -3.4610 7 6 1.8147 -1.2091 -4.3547 8 6 2.3113 -1.9457 -5.4134 9 7 3.6107 -2.0982 -5.5784 10 6 4.4830 -1.5594 -4.7489 11 6 4.0604 -0.8088 -3.6682 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 0.9577 0.9883 2.7355 16 6 1.3729 1.3851 4.1743 17 6 1.4883 -0.0023 4.8590 18 6 2.0342 -0.9027 3.7306 19 1 3.1152 -1.0029 3.8291 20 6 1.3730 -2.2809 3.7949 21 7 1.8024 -2.9723 5.0130 22 6 3.0534 -3.7345 5.0204 23 6 1.0344 -2.9059 6.1448 24 1 0.1789 -2.2476 6.1792 25 6 1.3555 -3.6847 7.2481 26 7 2.4596 -4.4010 7.2491 27 14 0.2204 -3.7161 8.7314 28 1 -0.7790 -4.8021 8.5670 29 1 1.0182 -3.9594 9.9600 30 1 -0.4802 -2.4119 8.8463 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.9320 0.9513 -2.0450 35 1 1.2538 0.6547 -2.5588 36 1 0.7495 -1.0878 -4.2249 37 1 1.6271 -2.4051 -6.1114 38 1 5.5398 -1.7058 -4.9166 39 1 4.7797 -0.3698 -2.9926 40 1 1.2391 1.7702 2.0302 41 1 -0.1152 0.8021 2.6863 42 1 2.3323 1.9024 4.1754 43 1 0.6027 1.9925 4.6497 44 1 2.1860 0.0373 5.6956 45 1 0.5103 -0.3514 5.1906 46 1 0.2894 -2.1638 3.8063 47 1 1.6660 -2.8655 2.9228 48 1 3.5586 -3.6129 4.0622 49 1 3.6974 -3.3682 5.8198 50 1 2.8349 -4.7898 5.1845 51 1 2.6838 -4.9456 8.0199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700359633.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:19 Heat of formation + Delta-G solvation = -23.879838 kcal Electronic energy + Delta-G solvation = -30917.249812 eV Core-core repulsion = 26817.367524 eV Total energy + Delta-G solvation = -4099.882287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.47766 -41.07273 -39.35234 -38.19336 -37.19381 -34.55417 -33.62434 -32.98443 -32.16010 -31.56432 -30.34709 -28.05847 -27.88862 -26.82857 -25.69725 -24.43244 -23.57034 -22.97322 -22.84040 -21.75115 -20.00181 -18.93042 -18.56371 -17.81919 -17.58564 -17.39152 -17.20210 -16.68024 -16.53342 -16.42825 -15.94604 -15.51796 -15.28133 -15.03393 -14.78649 -14.70511 -14.55887 -14.31779 -14.29413 -13.93971 -13.87102 -13.55576 -13.39143 -13.19933 -12.99170 -12.80695 -12.70396 -12.69215 -12.48596 -12.31378 -12.23614 -12.05524 -11.94988 -11.86427 -11.55203 -11.46990 -11.04406 -10.75894 -10.65558 -10.48623 -10.45650 -10.10194 -9.75007 -8.90145 -7.73167 -5.19147 0.12616 0.18530 1.47479 1.49928 1.55855 1.58496 1.77879 2.51724 2.66057 3.06587 3.35618 3.41880 3.57305 3.65243 3.72497 3.76571 3.82059 3.90102 3.93434 4.02558 4.10515 4.12044 4.19390 4.32764 4.38813 4.43153 4.46817 4.47630 4.65885 4.68900 4.74470 4.75753 4.81950 4.87078 4.88622 4.97216 4.98184 5.10465 5.12555 5.19604 5.24153 5.33503 5.42072 5.43138 5.51448 5.61242 5.74276 5.76845 6.04283 6.27986 6.60477 6.98672 7.14923 7.19394 7.85618 8.30307 9.26985 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002251 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.491406 B =12436.137318 C =13354.420690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 H 0.123 0.877 4 O -0.385 6.385 5 C 0.096 3.904 6 C -0.061 4.061 7 C -0.153 4.153 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.082 3.918 11 C -0.161 4.161 12 C 0.513 3.487 13 O -0.580 6.580 14 N -0.608 5.608 15 C 0.091 3.909 16 C -0.123 4.123 17 C -0.106 4.106 18 C 0.125 3.875 19 H 0.032 0.968 20 C 0.156 3.844 21 N -0.621 5.621 22 C 0.192 3.808 23 C -0.240 4.240 24 H 0.090 0.910 25 C -0.069 4.069 26 N -0.953 5.953 27 Si 0.976 3.024 28 H -0.291 1.291 29 H -0.299 1.299 30 H -0.260 1.260 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.160 0.840 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.019 0.981 48 H -0.002 1.002 49 H 0.021 0.979 50 H 0.013 0.987 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 20.320 -21.109 29.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 H 0.141 0.859 4 O -0.304 6.304 5 C 0.021 3.979 6 C -0.069 4.069 7 C -0.173 4.173 8 C -0.074 4.074 9 N -0.221 5.221 10 C -0.074 4.074 11 C -0.180 4.180 12 C 0.302 3.698 13 O -0.459 6.459 14 N -0.344 5.344 15 C -0.029 4.029 16 C -0.160 4.160 17 C -0.144 4.144 18 C 0.019 3.981 19 H 0.050 0.950 20 C 0.029 3.971 21 N -0.345 5.345 22 C 0.048 3.952 23 C -0.370 4.370 24 H 0.107 0.893 25 C -0.262 4.262 26 N -0.603 5.603 27 Si 0.805 3.195 28 H -0.218 1.218 29 H -0.226 1.226 30 H -0.184 1.184 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.177 0.823 37 H 0.196 0.804 38 H 0.191 0.809 39 H 0.164 0.836 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.017 0.983 49 H 0.040 0.960 50 H 0.031 0.969 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.834 18.997 -21.843 29.349 hybrid contribution -0.060 -0.420 1.834 1.882 sum -4.894 18.577 -20.009 27.739 Atomic orbital electron populations 1.22347 0.91340 1.03311 1.05697 1.21942 0.96457 0.96544 0.82660 0.85921 1.88103 1.87068 1.35571 1.19656 1.21628 1.02019 0.91195 0.83062 1.20295 0.93926 0.97252 0.95408 1.22372 1.02160 0.97535 0.95188 1.23235 0.91875 0.95439 0.96822 1.67683 1.04424 1.20419 1.29607 1.23128 1.00602 0.93083 0.90605 1.22341 0.96527 1.00022 0.99157 1.20976 0.79742 0.84564 0.84502 1.90723 1.39504 1.29023 1.86685 1.48685 1.55913 1.25569 1.04184 1.22824 0.97009 0.85095 0.98012 1.22844 1.03480 0.95530 0.94182 1.22412 1.01478 0.94887 0.95658 1.22171 0.97901 0.94579 0.83457 0.94978 1.20993 0.97022 0.91649 0.87449 1.44175 1.23328 1.58122 1.08861 1.20617 0.86491 0.94575 0.93561 1.19685 1.07014 1.19116 0.91154 0.89255 1.25782 0.99235 0.99311 1.01835 1.70450 1.25513 1.34036 1.30275 0.85110 0.77792 0.78312 0.78330 1.21843 1.22626 1.18385 0.93547 0.88523 0.88178 0.90268 0.88659 0.82257 0.80359 0.80910 0.83602 0.87080 0.89010 0.90378 0.86960 0.92182 0.91003 0.92784 0.96249 0.98311 0.96043 0.96854 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.37 71.98 0.67 -1.69 16 2 C 0.08 1.66 2.52 29.85 0.08 1.74 16 3 H 0.12 1.41 7.41 -2.39 -0.02 1.40 16 4 O -0.38 -9.29 9.50 -129.94 -1.23 -10.52 16 5 C 0.10 1.42 5.92 71.24 0.42 1.84 16 6 C -0.06 -1.09 5.55 -19.67 -0.11 -1.20 16 7 C -0.15 -2.46 9.82 22.36 0.22 -2.24 16 8 C 0.08 1.46 11.18 84.68 0.95 2.41 16 9 N -0.51 -11.20 10.36 -195.84 -2.03 -13.23 16 10 C 0.08 1.59 11.18 84.68 0.95 2.54 16 11 C -0.16 -3.01 9.82 22.36 0.22 -2.79 16 12 C 0.51 16.19 6.99 87.66 0.61 16.80 16 13 O -0.58 -25.79 15.68 16.02 0.25 -25.54 16 14 N -0.61 -17.19 3.05 -788.03 -2.40 -19.59 16 15 C 0.09 1.47 5.29 86.86 0.46 1.93 16 16 C -0.12 -2.21 7.09 31.99 0.23 -1.98 16 17 C -0.11 -3.24 5.75 31.79 0.18 -3.06 16 18 C 0.13 4.63 3.09 45.35 0.14 4.77 16 19 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 20 C 0.16 7.04 5.07 86.38 0.44 7.48 16 21 N -0.62 -33.19 2.84 -726.94 -2.06 -35.26 16 22 C 0.19 10.93 8.99 127.77 1.15 12.08 16 23 C -0.24 -13.10 8.99 84.03 0.76 -12.34 16 24 H 0.09 4.49 7.05 -2.91 -0.02 4.47 16 25 C -0.07 -3.94 5.46 84.86 0.46 -3.47 16 26 N -0.95 -58.30 9.46 21.65 0.20 -58.10 16 27 Si 0.98 45.22 29.56 68.60 2.03 47.24 16 28 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 29 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 30 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.99 5.20 -2.39 -0.01 0.98 16 33 H 0.10 0.76 7.87 -2.39 -0.02 0.74 16 34 H 0.08 0.88 8.04 -2.39 -0.02 0.86 16 35 H 0.10 0.78 7.83 -2.39 -0.02 0.76 16 36 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.11 0.94 7.51 -2.39 -0.02 0.92 16 41 H 0.09 1.17 6.90 -2.38 -0.02 1.15 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.07 2.31 6.79 -2.39 -0.02 2.30 16 46 H 0.05 2.30 7.89 -2.39 -0.02 2.28 16 47 H 0.02 0.96 6.80 -2.39 -0.02 0.95 16 48 H 0.00 -0.09 7.89 -2.39 -0.02 -0.11 16 49 H 0.02 1.28 7.09 -2.39 -0.02 1.26 16 50 H 0.01 0.80 7.01 -2.38 -0.02 0.79 16 51 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -84.19 406.37 3.49 -80.70 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.91 Total: 11.50 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 7.82 Total: 22.80 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -6.29 Total: -126.18 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.98 Total: -36.06 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -84.19 3.49 -80.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700359633.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.819 kcal (2) G-P(sol) polarization free energy of solvation -84.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds