Wall clock time and date at job start Wed Apr 1 2020 04:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 O 1.42902 * 109.46951 * 239.99691 * 2 1 3 5 5 C 1.35681 * 116.99826 * 89.99939 * 4 2 1 6 6 C 1.38918 * 119.68641 * 179.97438 * 5 4 2 7 7 C 1.38369 * 119.11489 * 179.97438 * 6 5 4 8 8 C 1.38828 * 118.48346 * 0.02562 * 7 6 5 9 9 C 1.38043 * 119.29382 * 0.02562 * 8 7 6 10 10 N 1.31967 * 120.82986 * 359.73973 * 9 8 7 11 11 C 1.50702 * 109.47154 * 119.99966 * 2 1 3 12 12 O 1.21274 * 120.00209 * 119.99872 * 11 2 1 13 13 N 1.34780 * 119.99590 * 299.99857 * 11 2 1 14 14 C 1.46494 * 119.99699 * 185.18375 * 13 11 2 15 15 C 1.53007 * 109.47296 * 298.53342 * 14 13 11 16 16 N 1.46500 * 109.46945 * 305.44892 * 15 14 13 17 17 C 1.36933 * 120.00154 * 185.18942 * 16 15 14 18 18 H 1.08001 * 120.00124 * 354.25139 * 17 16 15 19 19 C 1.38811 * 120.00404 * 174.24334 * 17 16 15 20 20 N 1.31616 * 120.00277 * 183.68019 * 19 17 16 21 21 Si 1.86805 * 119.99772 * 3.67312 * 19 17 16 22 22 H 1.48502 * 109.46633 * 92.94445 * 21 19 17 23 23 H 1.48494 * 109.47313 * 212.94428 * 21 19 17 24 24 H 1.48503 * 109.47162 * 332.94881 * 21 19 17 25 25 C 1.53000 * 109.47487 * 58.53271 * 14 13 11 26 26 C 1.52997 * 109.46816 * 59.99682 * 25 14 13 27 27 C 1.52995 * 109.47223 * 60.00801 * 26 25 14 28 28 C 1.53006 * 109.46823 * 299.99496 * 27 26 25 29 29 C 1.52999 * 109.47475 * 178.53425 * 14 13 11 30 30 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47150 * 300.00247 * 1 2 3 32 32 H 1.09002 * 109.47016 * 60.00244 * 1 2 3 33 33 H 1.08001 * 120.44236 * 359.96237 * 6 5 4 34 34 H 1.08003 * 120.75856 * 180.02562 * 7 6 5 35 35 H 1.08005 * 120.35449 * 180.02562 * 8 7 6 36 36 H 1.08003 * 119.58974 * 180.02562 * 9 8 7 37 37 H 0.96997 * 120.00324 * 5.18839 * 13 11 2 38 38 H 1.08991 * 109.46968 * 65.45043 * 15 14 13 39 39 H 1.09003 * 109.47323 * 185.45246 * 15 14 13 40 40 H 0.96997 * 119.99849 * 5.20288 * 16 15 14 41 41 H 0.97006 * 120.00130 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47493 * 180.02562 * 25 14 13 43 43 H 1.09002 * 109.46880 * 300.00095 * 25 14 13 44 44 H 1.09000 * 109.47666 * 300.00071 * 26 25 14 45 45 H 1.09007 * 109.46921 * 180.02562 * 26 25 14 46 46 H 1.08995 * 109.47641 * 179.97438 * 27 26 25 47 47 H 1.08998 * 109.47720 * 59.99531 * 27 26 25 48 48 H 1.08994 * 109.47433 * 300.00252 * 28 27 26 49 49 H 1.09002 * 109.47133 * 179.97438 * 28 27 26 50 50 H 1.09001 * 109.46957 * 59.99660 * 29 14 13 51 51 H 1.08994 * 109.47513 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2116 0.0828 -2.2742 6 6 2.6747 -0.5149 -3.4396 7 6 2.8794 0.2678 -4.5622 8 6 2.6129 1.6277 -4.4788 9 6 2.1557 2.1545 -3.2876 10 7 1.9657 1.3817 -2.2349 11 6 2.0324 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7068 -0.2498 2.4546 14 6 2.2860 -0.8704 3.6485 15 6 1.8666 -2.3404 3.7138 16 7 0.4062 -2.4350 3.6461 17 6 -0.2088 -3.6495 3.7941 18 1 0.3837 -4.5495 3.8677 19 6 -1.5938 -3.7240 3.8497 20 7 -2.1826 -4.8814 4.0644 21 14 -2.6220 -2.1814 3.6199 22 1 -2.9972 -2.0452 2.1895 23 1 -3.8515 -2.2782 4.4470 24 1 -1.8347 -0.9945 4.0403 25 6 3.8117 -0.7778 3.5824 26 6 4.2311 0.6921 3.5171 27 6 3.7297 1.4214 4.7651 28 6 2.2039 1.3289 4.8314 29 6 1.7845 -0.1412 4.8966 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.8724 -1.5762 -3.4690 34 1 3.2383 -0.1693 -5.4823 35 1 2.7617 2.2667 -5.3367 36 1 1.9464 3.2118 -3.2175 37 1 1.0889 0.4924 2.5450 38 1 2.3050 -2.8808 2.8750 39 1 2.2159 -2.7767 4.6496 40 1 -0.1250 -1.6374 3.4962 41 1 -3.1504 -4.9334 4.1029 42 1 4.2427 -1.2399 4.4705 43 1 4.1690 -1.2974 2.6932 44 1 3.8002 1.1539 2.6287 45 1 5.3181 0.7581 3.4695 46 1 4.0288 2.4685 4.7189 47 1 4.1606 0.9597 5.6535 48 1 1.7729 1.7905 3.9430 49 1 1.8467 1.8480 5.7207 50 1 0.6975 -0.2071 4.9438 51 1 2.2158 -0.6026 5.7849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700515341.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:08 Heat of formation + Delta-G solvation = -26.036090 kcal Electronic energy + Delta-G solvation = -32327.841552 eV Core-core repulsion = 28227.865762 eV Total energy + Delta-G solvation = -4099.975790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.98392 -40.35535 -38.52895 -37.18406 -34.78720 -33.51426 -32.71987 -32.29577 -31.15099 -30.73397 -30.19016 -29.32458 -25.50822 -24.98891 -23.83760 -23.14667 -22.85204 -22.11386 -20.88398 -20.33343 -18.97964 -18.58762 -17.73282 -17.62117 -16.53825 -16.13891 -15.79323 -15.56598 -15.08655 -14.78851 -14.71851 -14.40763 -14.35522 -13.96401 -13.74642 -13.47540 -13.41301 -13.24534 -13.14668 -12.76163 -12.48928 -12.35953 -12.23449 -12.18134 -12.11120 -11.84883 -11.73751 -11.48479 -11.17933 -11.10620 -10.96332 -10.86457 -10.59596 -10.20909 -10.18151 -10.12119 -9.96897 -9.82522 -9.56919 -9.28048 -8.76157 -8.66484 -8.63836 -7.09738 -5.70128 -3.03282 0.93474 1.04193 2.55238 2.89077 3.33306 3.37779 3.44731 3.53423 3.61021 4.05636 4.59692 4.62330 4.64940 4.78376 4.79469 4.84116 4.85353 4.90111 4.94361 5.00734 5.08882 5.21330 5.24405 5.46597 5.49167 5.55511 5.56778 5.60200 5.63107 5.66455 5.70985 5.75460 5.79073 5.88494 5.95656 6.05255 6.09297 6.12788 6.21564 6.22210 6.24802 6.31514 6.42784 6.50922 6.53086 6.86084 7.04888 7.10599 7.61812 7.75456 8.09918 8.47811 8.50500 9.29716 10.01679 10.23518 11.48911 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.003917 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.139824 B = 7146.036090 C = 8950.678846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 H 0.110 0.890 4 O -0.271 6.271 5 C 0.328 3.672 6 C -0.189 4.189 7 C -0.041 4.041 8 C -0.218 4.218 9 C 0.139 3.861 10 N -0.543 5.543 11 C 0.522 3.478 12 O -0.506 6.506 13 N -0.710 5.710 14 C 0.176 3.824 15 C 0.145 3.855 16 N -0.749 5.749 17 C -0.233 4.233 18 H 0.088 0.912 19 C 0.001 3.999 20 N -0.936 5.936 21 Si 0.882 3.118 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.279 1.279 25 C -0.128 4.128 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.120 4.120 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.158 0.842 37 H 0.394 0.606 38 H 0.050 0.950 39 H 0.034 0.966 40 H 0.358 0.642 41 H 0.257 0.743 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.075 0.925 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.011 19.720 -11.314 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 H 0.128 0.872 4 O -0.177 6.177 5 C 0.149 3.851 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.239 4.239 9 C -0.017 4.017 10 N -0.268 5.268 11 C 0.306 3.694 12 O -0.380 6.380 13 N -0.364 5.364 14 C 0.091 3.909 15 C 0.017 3.983 16 N -0.395 5.395 17 C -0.363 4.363 18 H 0.106 0.894 19 C -0.194 4.194 20 N -0.585 5.585 21 Si 0.713 3.287 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.205 1.205 25 C -0.167 4.167 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.158 4.158 29 C -0.158 4.158 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.175 0.825 37 H 0.229 0.771 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.191 0.809 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.094 0.906 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.242 18.801 -10.497 24.769 hybrid contribution -1.102 1.199 -0.858 1.841 sum 11.140 20.000 -11.355 25.554 Atomic orbital electron populations 1.22195 0.92499 1.04477 1.03326 1.22127 0.95785 0.97592 0.83037 0.87227 1.86430 1.79446 1.34233 1.17554 1.19956 0.90614 0.87321 0.87253 1.21135 1.06025 1.02394 0.91386 1.21415 0.94145 0.93427 0.97624 1.21954 1.05767 0.96233 0.99927 1.22403 0.92709 0.99133 0.87443 1.67278 1.21944 1.04845 1.32699 1.19928 0.80959 0.84574 0.83919 1.90687 1.37173 1.23979 1.86186 1.45855 1.48429 1.37105 1.04991 1.20664 0.92659 0.94214 0.83395 1.21109 0.85741 0.91641 0.99794 1.42572 1.01069 1.06884 1.88956 1.19072 0.90329 0.85772 1.41098 0.89370 1.24646 0.96252 0.96108 1.02376 1.69706 1.08900 1.23093 1.56788 0.86575 0.80417 0.83965 0.77720 1.21294 1.21860 1.20521 1.21884 0.94529 0.96580 1.03705 1.21458 0.99921 0.95833 0.97893 1.21536 0.95763 0.99767 0.98432 1.21568 0.95946 0.96725 1.01513 1.21808 1.02194 0.94631 0.97199 0.90473 0.90575 0.91065 0.83847 0.84186 0.84683 0.82486 0.77123 0.93192 0.94860 0.80923 0.93240 0.91054 0.89821 0.92403 0.92407 0.92512 0.91959 0.92356 0.91910 0.90638 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.43 37.16 0.35 -1.96 16 2 C 0.07 1.08 2.92 -27.88 -0.08 1.00 16 3 H 0.11 1.39 6.99 -51.93 -0.36 1.03 16 4 O -0.27 -4.35 9.29 -38.66 -0.36 -4.71 16 5 C 0.33 4.42 7.45 -17.12 -0.13 4.30 16 6 C -0.19 -2.11 10.04 -39.28 -0.39 -2.51 16 7 C -0.04 -0.34 10.17 -39.31 -0.40 -0.74 16 8 C -0.22 -1.65 10.10 -39.43 -0.40 -2.05 16 9 C 0.14 1.24 11.18 -17.56 -0.20 1.04 16 10 N -0.54 -6.54 8.65 -13.33 -0.12 -6.65 16 11 C 0.52 8.75 6.64 -10.98 -0.07 8.68 16 12 O -0.51 -10.40 12.80 -14.35 -0.18 -10.58 16 13 N -0.71 -10.47 3.29 -47.61 -0.16 -10.62 16 14 C 0.18 2.73 0.32 -131.82 -0.04 2.69 16 15 C 0.14 2.99 4.88 -4.04 -0.02 2.97 16 16 N -0.75 -18.05 4.92 -59.91 -0.29 -18.35 16 17 C -0.23 -6.78 10.47 -15.06 -0.16 -6.94 16 18 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 19 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 20 N -0.94 -30.08 13.97 55.49 0.78 -29.30 16 21 Si 0.88 22.22 27.85 -169.99 -4.73 17.49 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.28 -6.38 6.36 56.52 0.36 -6.02 16 25 C -0.13 -1.79 4.50 -26.73 -0.12 -1.91 16 26 C -0.11 -1.29 5.76 -26.73 -0.15 -1.45 16 27 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 28 C -0.12 -1.28 5.75 -26.72 -0.15 -1.43 16 29 C -0.12 -1.65 4.65 -26.73 -0.12 -1.78 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.08 0.91 7.46 -51.93 -0.39 0.52 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 36 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.39 4.90 6.65 -40.82 -0.27 4.63 16 38 H 0.05 1.17 6.28 -51.93 -0.33 0.84 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.36 8.23 4.42 -40.82 -0.18 8.04 16 41 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.37 6.24 -51.93 -0.32 1.04 16 44 H 0.06 0.68 7.60 -51.93 -0.39 0.29 16 45 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.58 6.89 -51.93 -0.36 0.22 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 1.18 7.33 -51.93 -0.38 0.80 16 51 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -35.71 398.78 -9.49 -45.19 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -8.08 Total: 13.01 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.35 Total: -1.48 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 0.21 Total: -64.93 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.54 Total: -15.29 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.73 Total: 17.49 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.71 -9.49 -45.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700515341.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.158 kcal (2) G-P(sol) polarization free energy of solvation -35.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds