Wall clock time and date at job start Wed Apr 1 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 O 1.42902 * 109.46951 * 239.99691 * 2 1 3 5 5 C 1.35681 * 116.99826 * 89.99939 * 4 2 1 6 6 C 1.38918 * 119.68641 * 179.97438 * 5 4 2 7 7 C 1.38369 * 119.11489 * 179.97438 * 6 5 4 8 8 C 1.38828 * 118.48346 * 0.02562 * 7 6 5 9 9 C 1.38043 * 119.29382 * 0.02562 * 8 7 6 10 10 N 1.31967 * 120.82986 * 359.73973 * 9 8 7 11 11 C 1.50702 * 109.47154 * 119.99966 * 2 1 3 12 12 O 1.21274 * 120.00209 * 119.99872 * 11 2 1 13 13 N 1.34780 * 119.99590 * 299.99857 * 11 2 1 14 14 C 1.46494 * 119.99699 * 185.18375 * 13 11 2 15 15 C 1.53007 * 109.47296 * 298.53342 * 14 13 11 16 16 N 1.46500 * 109.46945 * 305.44892 * 15 14 13 17 17 C 1.36933 * 120.00154 * 185.18942 * 16 15 14 18 18 H 1.08001 * 120.00124 * 354.25139 * 17 16 15 19 19 C 1.38811 * 120.00404 * 174.24334 * 17 16 15 20 20 N 1.31616 * 120.00277 * 183.68019 * 19 17 16 21 21 Si 1.86805 * 119.99772 * 3.67312 * 19 17 16 22 22 H 1.48502 * 109.46633 * 92.94445 * 21 19 17 23 23 H 1.48494 * 109.47313 * 212.94428 * 21 19 17 24 24 H 1.48503 * 109.47162 * 332.94881 * 21 19 17 25 25 C 1.53000 * 109.47487 * 58.53271 * 14 13 11 26 26 C 1.52997 * 109.46816 * 59.99682 * 25 14 13 27 27 C 1.52995 * 109.47223 * 60.00801 * 26 25 14 28 28 C 1.53006 * 109.46823 * 299.99496 * 27 26 25 29 29 C 1.52999 * 109.47475 * 178.53425 * 14 13 11 30 30 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47150 * 300.00247 * 1 2 3 32 32 H 1.09002 * 109.47016 * 60.00244 * 1 2 3 33 33 H 1.08001 * 120.44236 * 359.96237 * 6 5 4 34 34 H 1.08003 * 120.75856 * 180.02562 * 7 6 5 35 35 H 1.08005 * 120.35449 * 180.02562 * 8 7 6 36 36 H 1.08003 * 119.58974 * 180.02562 * 9 8 7 37 37 H 0.96997 * 120.00324 * 5.18839 * 13 11 2 38 38 H 1.08991 * 109.46968 * 65.45043 * 15 14 13 39 39 H 1.09003 * 109.47323 * 185.45246 * 15 14 13 40 40 H 0.96997 * 119.99849 * 5.20288 * 16 15 14 41 41 H 0.97006 * 120.00130 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47493 * 180.02562 * 25 14 13 43 43 H 1.09002 * 109.46880 * 300.00095 * 25 14 13 44 44 H 1.09000 * 109.47666 * 300.00071 * 26 25 14 45 45 H 1.09007 * 109.46921 * 180.02562 * 26 25 14 46 46 H 1.08995 * 109.47641 * 179.97438 * 27 26 25 47 47 H 1.08998 * 109.47720 * 59.99531 * 27 26 25 48 48 H 1.08994 * 109.47433 * 300.00252 * 28 27 26 49 49 H 1.09002 * 109.47133 * 179.97438 * 28 27 26 50 50 H 1.09001 * 109.46957 * 59.99660 * 29 14 13 51 51 H 1.08994 * 109.47513 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2116 0.0828 -2.2742 6 6 2.6747 -0.5149 -3.4396 7 6 2.8794 0.2678 -4.5622 8 6 2.6129 1.6277 -4.4788 9 6 2.1557 2.1545 -3.2876 10 7 1.9657 1.3817 -2.2349 11 6 2.0324 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7068 -0.2498 2.4546 14 6 2.2860 -0.8704 3.6485 15 6 1.8666 -2.3404 3.7138 16 7 0.4062 -2.4350 3.6461 17 6 -0.2088 -3.6495 3.7941 18 1 0.3837 -4.5495 3.8677 19 6 -1.5938 -3.7240 3.8497 20 7 -2.1826 -4.8814 4.0644 21 14 -2.6220 -2.1814 3.6199 22 1 -2.9972 -2.0452 2.1895 23 1 -3.8515 -2.2782 4.4470 24 1 -1.8347 -0.9945 4.0403 25 6 3.8117 -0.7778 3.5824 26 6 4.2311 0.6921 3.5171 27 6 3.7297 1.4214 4.7651 28 6 2.2039 1.3289 4.8314 29 6 1.7845 -0.1412 4.8966 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.8724 -1.5762 -3.4690 34 1 3.2383 -0.1693 -5.4823 35 1 2.7617 2.2667 -5.3367 36 1 1.9464 3.2118 -3.2175 37 1 1.0889 0.4924 2.5450 38 1 2.3050 -2.8808 2.8750 39 1 2.2159 -2.7767 4.6496 40 1 -0.1250 -1.6374 3.4962 41 1 -3.1504 -4.9334 4.1029 42 1 4.2427 -1.2399 4.4705 43 1 4.1690 -1.2974 2.6932 44 1 3.8002 1.1539 2.6287 45 1 5.3181 0.7581 3.4695 46 1 4.0288 2.4685 4.7189 47 1 4.1606 0.9597 5.6535 48 1 1.7729 1.7905 3.9430 49 1 1.8467 1.8480 5.7207 50 1 0.6975 -0.2071 4.9438 51 1 2.2158 -0.6026 5.7849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700515341.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:07 Heat of formation + Delta-G solvation = -50.653301 kcal Electronic energy + Delta-G solvation = -32328.909034 eV Core-core repulsion = 28227.865762 eV Total energy + Delta-G solvation = -4101.043272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.05305 -41.39649 -39.55914 -38.33421 -36.56036 -34.91895 -33.83672 -33.42729 -32.80418 -31.74475 -31.21910 -30.58763 -27.21348 -26.06449 -24.61321 -24.40932 -24.04295 -23.41164 -22.17737 -21.48444 -20.25971 -19.76596 -19.50735 -18.78455 -17.43947 -16.96854 -16.86593 -16.72595 -16.49299 -16.37882 -15.89713 -15.59369 -15.48391 -15.20232 -14.95333 -14.76299 -14.67958 -14.41337 -14.24593 -14.00603 -13.97125 -13.74283 -13.45860 -13.18056 -13.13862 -12.97365 -12.91820 -12.77776 -12.76127 -12.65998 -12.22840 -12.11455 -12.01328 -11.86676 -11.47057 -11.19265 -11.11450 -11.03765 -10.90678 -10.60856 -10.46816 -10.00510 -9.49509 -9.25588 -8.04047 -5.36947 0.20266 0.32126 1.29290 1.37845 1.44798 1.46986 1.62269 2.45752 2.47130 2.82813 3.25200 3.27389 3.49939 3.55596 3.78464 3.82046 3.84789 3.94215 3.95392 4.04549 4.11341 4.21543 4.22712 4.33993 4.37163 4.45490 4.56277 4.58393 4.58506 4.61879 4.74369 4.80574 4.81732 4.84746 5.00825 5.07253 5.09046 5.14274 5.17764 5.23660 5.28758 5.28885 5.35470 5.42671 5.51135 5.53817 5.64596 5.74218 6.18455 6.19673 6.54028 6.85599 7.06517 7.23431 7.80764 8.06006 9.18163 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.003917 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.139824 B = 7146.036090 C = 8950.678846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.083 3.917 3 H 0.131 0.869 4 O -0.306 6.306 5 C 0.293 3.707 6 C -0.210 4.210 7 C -0.036 4.036 8 C -0.204 4.204 9 C 0.128 3.872 10 N -0.557 5.557 11 C 0.516 3.484 12 O -0.553 6.553 13 N -0.698 5.698 14 C 0.184 3.816 15 C 0.144 3.856 16 N -0.742 5.742 17 C -0.234 4.234 18 H 0.042 0.958 19 C -0.066 4.066 20 N -0.986 5.986 21 Si 0.956 3.044 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.238 1.238 25 C -0.124 4.124 26 C -0.107 4.107 27 C -0.112 4.112 28 C -0.114 4.114 29 C -0.117 4.117 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.191 0.809 37 H 0.410 0.590 38 H 0.016 0.984 39 H 0.027 0.973 40 H 0.367 0.633 41 H 0.258 0.742 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.115 25.129 -12.327 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.148 0.852 4 O -0.213 6.213 5 C 0.115 3.885 6 C -0.231 4.231 7 C -0.062 4.062 8 C -0.223 4.223 9 C -0.027 4.027 10 N -0.282 5.282 11 C 0.302 3.698 12 O -0.431 6.431 13 N -0.353 5.353 14 C 0.098 3.902 15 C 0.017 3.983 16 N -0.388 5.388 17 C -0.365 4.365 18 H 0.060 0.940 19 C -0.257 4.257 20 N -0.637 5.637 21 Si 0.782 3.218 22 H -0.207 1.207 23 H -0.219 1.219 24 H -0.162 1.162 25 C -0.163 4.163 26 C -0.144 4.144 27 C -0.150 4.150 28 C -0.151 4.151 29 C -0.155 4.155 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.189 0.811 35 H 0.191 0.809 36 H 0.207 0.793 37 H 0.247 0.753 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.079 0.921 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.373 24.275 -11.510 29.578 hybrid contribution -1.026 -0.587 -0.673 1.360 sum 11.347 23.688 -12.183 28.954 Atomic orbital electron populations 1.22175 0.91990 1.02712 1.05045 1.22076 0.95940 0.97841 0.81854 0.85191 1.86380 1.80379 1.35906 1.18608 1.20192 0.92999 0.88230 0.87070 1.21338 1.07012 1.02697 0.92070 1.21841 0.92942 0.93798 0.97574 1.22417 1.03205 0.96157 1.00552 1.23089 0.92075 1.00335 0.87205 1.67231 1.22421 1.04264 1.34247 1.20506 0.80146 0.84038 0.85105 1.90673 1.39317 1.26148 1.86924 1.45766 1.48237 1.37040 1.04226 1.20517 0.93860 0.90887 0.84912 1.21153 0.83594 0.95662 0.97905 1.42402 1.02417 1.05358 1.88620 1.18973 0.90533 0.86300 1.40686 0.93955 1.25569 0.97537 1.00296 1.02292 1.69916 1.09232 1.26235 1.58309 0.85398 0.78260 0.80436 0.77742 1.20707 1.21896 1.16177 1.21817 0.93144 0.98786 1.02522 1.21421 1.00652 0.93470 0.98899 1.21520 0.95173 1.00851 0.97439 1.21563 0.96475 0.94028 1.03049 1.21786 1.01102 0.96935 0.95656 0.93823 0.88320 0.89829 0.84579 0.81060 0.80899 0.79257 0.75313 0.96579 0.95489 0.79867 0.93356 0.90553 0.92814 0.92584 0.91365 0.90211 0.91562 0.91172 0.89998 0.92093 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 9.43 71.98 0.68 -3.68 16 2 C 0.08 2.41 2.92 29.85 0.09 2.50 16 3 H 0.13 3.16 6.99 -2.39 -0.02 3.15 16 4 O -0.31 -10.29 9.29 -70.96 -0.66 -10.94 16 5 C 0.29 7.99 7.45 84.79 0.63 8.62 16 6 C -0.21 -4.75 10.04 22.46 0.23 -4.52 16 7 C -0.04 -0.52 10.17 22.44 0.23 -0.29 16 8 C -0.20 -2.32 10.10 22.36 0.23 -2.10 16 9 C 0.13 1.89 11.18 84.63 0.95 2.84 16 10 N -0.56 -12.60 8.65 -308.94 -2.67 -15.27 16 11 C 0.52 17.74 6.64 87.66 0.58 18.32 16 12 O -0.55 -24.29 12.80 16.03 0.21 -24.08 16 13 N -0.70 -20.09 3.29 -422.93 -1.39 -21.48 16 14 C 0.18 5.69 0.32 3.61 0.00 5.69 16 15 C 0.14 6.25 4.88 86.38 0.42 6.67 16 16 N -0.74 -36.61 4.92 -343.45 -1.69 -38.30 16 17 C -0.23 -14.28 10.47 84.03 0.88 -13.40 16 18 H 0.04 2.91 8.06 -2.91 -0.02 2.88 16 19 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 20 N -0.99 -65.79 13.97 21.65 0.30 -65.49 16 21 Si 0.96 45.81 27.85 68.60 1.91 47.72 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.24 -9.70 6.36 99.48 0.63 -9.07 16 25 C -0.12 -3.47 4.50 30.59 0.14 -3.33 16 26 C -0.11 -2.21 5.76 30.59 0.18 -2.03 16 27 C -0.11 -1.82 5.92 30.59 0.18 -1.64 16 28 C -0.11 -1.97 5.75 30.60 0.18 -1.80 16 29 C -0.12 -2.97 4.65 30.60 0.14 -2.82 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.10 2.12 7.46 -2.39 -0.02 2.11 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.41 9.16 6.65 -92.71 -0.62 8.54 16 38 H 0.02 0.82 6.28 -2.39 -0.02 0.81 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.37 16.57 4.42 -92.71 -0.41 16.16 16 41 H 0.26 16.25 8.31 -92.70 -0.77 15.48 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.05 1.85 6.24 -2.39 -0.01 1.83 16 44 H 0.06 1.19 7.60 -2.39 -0.02 1.17 16 45 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.07 1.08 6.89 -2.39 -0.02 1.06 16 49 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.06 1.74 7.33 -2.39 -0.02 1.72 16 51 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -85.01 398.78 2.03 -82.98 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.16 Total: 39.42 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 6.19 Total: 5.44 kcal Atomic # 7 Polarization: -135.08 SS G_CDS: -5.45 Total: -140.53 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.45 Total: -35.02 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.91 Total: 47.72 kcal Total: -85.01 2.03 -82.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700515341.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.323 kcal (2) G-P(sol) polarization free energy of solvation -85.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds