Wall clock time and date at job start Wed Apr 1 2020 04:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46758 * 2 1 4 4 O 1.42897 * 109.47122 * 120.00596 * 2 1 3 5 5 C 1.35679 * 116.99467 * 270.00065 * 4 2 1 6 6 C 1.38924 * 119.68384 * 179.73142 * 5 4 2 7 7 C 1.38373 * 119.10934 * 179.75470 * 6 5 4 8 8 C 1.38823 * 118.49067 * 0.50488 * 7 6 5 9 9 C 1.38053 * 119.28696 * 359.73095 * 8 7 6 10 10 N 1.31962 * 120.83262 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47227 * 240.00430 * 2 1 3 12 12 O 1.21279 * 119.99788 * 245.00173 * 11 2 1 13 13 N 1.34776 * 120.00273 * 64.99530 * 11 2 1 14 14 C 1.46501 * 120.00126 * 174.59474 * 13 11 2 15 15 C 1.53007 * 109.46588 * 64.32441 * 14 13 11 16 16 N 1.46497 * 109.46992 * 54.80482 * 15 14 13 17 17 C 1.36939 * 119.99855 * 184.97442 * 16 15 14 18 18 H 1.07998 * 120.00045 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00043 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99942 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46712 * 89.99996 * 21 19 17 23 23 H 1.48496 * 109.46857 * 209.99595 * 21 19 17 24 24 H 1.48498 * 109.47102 * 329.99689 * 21 19 17 25 25 C 1.52995 * 109.47518 * 304.32804 * 14 13 11 26 26 C 1.53006 * 109.46710 * 299.99794 * 25 14 13 27 27 C 1.52997 * 109.47226 * 299.99949 * 26 25 14 28 28 C 1.52999 * 109.47085 * 60.00032 * 27 26 25 29 29 C 1.52994 * 109.47276 * 184.32126 * 14 13 11 30 30 H 1.09000 * 109.47196 * 299.99702 * 1 2 3 31 31 H 1.08998 * 109.47125 * 60.00086 * 1 2 3 32 32 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.43859 * 359.97438 * 6 5 4 34 34 H 1.08010 * 120.75334 * 180.23515 * 7 6 5 35 35 H 1.07995 * 120.36028 * 179.71013 * 8 7 6 36 36 H 1.08001 * 119.58279 * 180.02562 * 9 8 7 37 37 H 0.97005 * 119.99961 * 354.60397 * 13 11 2 38 38 H 1.08998 * 109.46755 * 174.80278 * 15 14 13 39 39 H 1.08999 * 109.47224 * 294.80390 * 15 14 13 40 40 H 0.96999 * 120.00616 * 4.97800 * 16 15 14 41 41 H 0.96999 * 120.00645 * 179.97438 * 20 19 17 42 42 H 1.08992 * 109.47510 * 179.97438 * 25 14 13 43 43 H 1.09001 * 109.47412 * 59.99181 * 25 14 13 44 44 H 1.09002 * 109.46988 * 179.97438 * 26 25 14 45 45 H 1.09001 * 109.47091 * 60.00218 * 26 25 14 46 46 H 1.09001 * 109.47227 * 180.02562 * 27 26 25 47 47 H 1.09005 * 109.46618 * 300.00327 * 27 26 25 48 48 H 1.09001 * 109.46963 * 59.99896 * 28 27 26 49 49 H 1.09003 * 109.47029 * 180.02562 * 28 27 26 50 50 H 1.09001 * 109.47499 * 180.02562 * 29 14 13 51 51 H 1.08998 * 109.47596 * 300.00896 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 0.0828 2.2741 6 6 2.6688 -0.5160 3.4413 7 6 2.8790 0.2677 4.5622 8 6 2.6130 1.6277 4.4788 9 6 2.1556 2.1545 3.2875 10 7 1.9695 1.3823 2.2337 11 6 2.0324 -0.7103 -1.2305 12 8 2.6530 -1.7466 -1.1216 13 7 1.7919 -0.1941 -2.4521 14 6 2.3796 -0.8185 -3.6399 15 6 1.8115 -2.2292 -3.8083 16 7 0.3483 -2.1657 -3.8406 17 6 -0.3864 -3.3206 -3.8823 18 1 0.1129 -4.2782 -3.8908 19 6 -1.7729 -3.2605 -3.9135 20 7 -2.3814 -2.0935 -3.9026 21 14 -2.7750 -4.8359 -3.9695 22 1 -3.0733 -5.2823 -2.5849 23 1 -4.0471 -4.5878 -4.6944 24 1 -2.0014 -5.8899 -4.6736 25 6 3.8988 -0.8968 -3.4762 26 6 4.4668 0.5139 -3.3077 27 6 4.1294 1.3505 -4.5435 28 6 2.6102 1.4287 -4.7072 29 6 2.0422 0.0180 -4.8756 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.8610 -1.5782 3.4723 34 1 3.2376 -0.1695 5.4824 35 1 2.7619 2.2666 5.3366 36 1 1.9476 3.2119 3.2171 37 1 1.2297 0.5910 -2.5447 38 1 2.1773 -2.6592 -4.7407 39 1 2.1298 -2.8513 -2.9718 40 1 -0.1002 -1.3057 -3.8327 41 1 -3.3502 -2.0514 -3.9247 42 1 4.3360 -1.3617 -4.3597 43 1 4.1392 -1.4927 -2.5958 44 1 5.5491 0.4582 -3.1906 45 1 4.0296 0.9785 -2.4239 46 1 4.5345 2.3554 -4.4236 47 1 4.5667 0.8858 -5.4272 48 1 2.1730 1.8933 -3.8234 49 1 2.3699 2.0243 -5.5878 50 1 2.4791 -0.4468 -5.7595 51 1 0.9599 0.0738 -4.9923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700515342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:15 Heat of formation + Delta-G solvation = -31.077187 kcal Electronic energy + Delta-G solvation = -32215.866649 eV Core-core repulsion = 28115.672261 eV Total energy + Delta-G solvation = -4100.194388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.87459 -40.22124 -38.41209 -37.04867 -34.60985 -33.34063 -32.65169 -32.18758 -30.94656 -30.61367 -29.99775 -29.00025 -25.23272 -24.81913 -23.75807 -23.05906 -22.96273 -22.21427 -20.78117 -20.22788 -18.82246 -18.45642 -17.56915 -17.12398 -16.43756 -16.05179 -15.68142 -15.42138 -15.06801 -14.67155 -14.60827 -14.40537 -14.18965 -13.77687 -13.61322 -13.36825 -13.18472 -13.12442 -13.09100 -12.82219 -12.24483 -12.15140 -12.10919 -12.07457 -11.97578 -11.72128 -11.57229 -11.26693 -11.03355 -10.90559 -10.81357 -10.74804 -10.49963 -10.14807 -10.11787 -10.02735 -9.85051 -9.73649 -9.59579 -9.12047 -8.74272 -8.58309 -8.46680 -6.79839 -5.69874 -2.95299 1.00038 1.11078 2.68791 3.03999 3.48564 3.53953 3.55209 3.62287 3.75223 4.14702 4.65689 4.65981 4.79599 4.85939 4.92418 4.95219 4.96008 5.02690 5.05871 5.16306 5.22758 5.35872 5.38183 5.54667 5.61691 5.66103 5.68738 5.73878 5.75160 5.81961 5.82883 5.90266 5.92614 6.01503 6.14432 6.17778 6.26135 6.27246 6.33791 6.37260 6.41142 6.45600 6.55446 6.63707 6.69825 6.96647 7.15554 7.21502 7.70211 7.79206 7.93951 8.49994 8.65877 9.61589 10.19705 10.55777 11.53340 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.003791 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.212425 B = 7383.786897 C = 9613.890719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.075 3.925 3 H 0.107 0.893 4 O -0.273 6.273 5 C 0.329 3.671 6 C -0.191 4.191 7 C -0.041 4.041 8 C -0.220 4.220 9 C 0.140 3.860 10 N -0.542 5.542 11 C 0.525 3.475 12 O -0.516 6.516 13 N -0.702 5.702 14 C 0.180 3.820 15 C 0.141 3.859 16 N -0.724 5.724 17 C -0.227 4.227 18 H 0.067 0.933 19 C -0.016 4.016 20 N -0.936 5.936 21 Si 0.904 3.096 22 H -0.292 1.292 23 H -0.293 1.293 24 H -0.283 1.283 25 C -0.130 4.130 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.119 4.119 29 C -0.119 4.119 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.158 0.842 37 H 0.396 0.604 38 H 0.018 0.982 39 H 0.046 0.954 40 H 0.381 0.619 41 H 0.252 0.748 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.897 13.377 11.033 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 H 0.125 0.875 4 O -0.178 6.178 5 C 0.150 3.850 6 C -0.211 4.211 7 C -0.067 4.067 8 C -0.240 4.240 9 C -0.016 4.016 10 N -0.266 5.266 11 C 0.310 3.690 12 O -0.391 6.391 13 N -0.354 5.354 14 C 0.094 3.906 15 C 0.012 3.988 16 N -0.368 5.368 17 C -0.359 4.359 18 H 0.085 0.915 19 C -0.211 4.211 20 N -0.586 5.586 21 Si 0.735 3.265 22 H -0.219 1.219 23 H -0.219 1.219 24 H -0.209 1.209 25 C -0.169 4.169 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.157 4.157 29 C -0.157 4.157 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.175 0.825 37 H 0.231 0.769 38 H 0.036 0.964 39 H 0.064 0.936 40 H 0.215 0.785 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.059 12.491 10.244 20.773 hybrid contribution -0.968 -0.397 0.666 1.240 sum 12.091 12.094 10.909 20.285 Atomic orbital electron populations 1.22122 0.91868 1.04554 1.03312 1.22155 0.96194 0.97331 0.82812 0.87534 1.86417 1.79389 1.34358 1.17653 1.19968 0.90450 0.87311 0.87293 1.21123 1.06288 1.02281 0.91443 1.21398 0.94228 0.93440 0.97602 1.21943 1.05926 0.96225 0.99943 1.22412 0.92624 0.99166 0.87418 1.67293 1.21808 1.04866 1.32661 1.19872 0.80020 0.85139 0.83993 1.90654 1.40223 1.21876 1.86299 1.45728 1.52057 1.32480 1.05177 1.20561 0.92225 0.94091 0.83676 1.21104 0.86286 0.92722 0.98660 1.42195 0.99086 1.06260 1.89245 1.19234 0.88627 0.86671 1.41333 0.91451 1.24646 0.96364 0.96515 1.03572 1.69634 1.08041 1.22244 1.58702 0.86226 0.79795 0.83010 0.77438 1.21916 1.21932 1.20890 1.21913 0.94302 0.97148 1.03548 1.21450 0.99758 0.95916 0.97922 1.21540 0.96214 0.99379 0.98368 1.21556 0.95491 0.97162 1.01449 1.21786 1.02450 0.94503 0.96982 0.91542 0.90040 0.90553 0.83952 0.84279 0.84740 0.82493 0.76919 0.96397 0.93627 0.78496 0.93791 0.91353 0.89634 0.92584 0.92427 0.92610 0.92115 0.92227 0.92000 0.90529 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.47 37.16 0.35 -2.14 16 2 C 0.08 1.17 2.90 -27.88 -0.08 1.09 16 3 H 0.11 1.47 6.98 -51.93 -0.36 1.11 16 4 O -0.27 -4.58 9.30 -38.60 -0.36 -4.94 16 5 C 0.33 4.65 7.45 -17.12 -0.13 4.52 16 6 C -0.19 -2.22 10.04 -39.28 -0.39 -2.62 16 7 C -0.04 -0.36 10.17 -39.32 -0.40 -0.76 16 8 C -0.22 -1.77 10.11 -39.43 -0.40 -2.17 16 9 C 0.14 1.33 11.18 -17.56 -0.20 1.13 16 10 N -0.54 -6.91 8.65 -13.33 -0.12 -7.02 16 11 C 0.53 9.38 6.51 -10.98 -0.07 9.31 16 12 O -0.52 -11.05 12.81 -14.30 -0.18 -11.24 16 13 N -0.70 -11.14 3.45 -47.61 -0.16 -11.30 16 14 C 0.18 2.96 0.32 -131.82 -0.04 2.91 16 15 C 0.14 3.01 4.94 -4.04 -0.02 2.99 16 16 N -0.72 -18.25 5.19 -59.91 -0.31 -18.56 16 17 C -0.23 -6.50 9.99 -15.06 -0.15 -6.65 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.94 -27.96 13.06 55.49 0.72 -27.23 16 21 Si 0.90 23.03 29.55 -169.99 -5.02 18.01 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 25 C -0.13 -1.95 4.45 -26.73 -0.12 -2.07 16 26 C -0.11 -1.40 5.77 -26.73 -0.15 -1.55 16 27 C -0.12 -1.28 5.92 -26.73 -0.16 -1.43 16 28 C -0.12 -1.37 5.75 -26.73 -0.15 -1.52 16 29 C -0.12 -1.73 4.64 -26.73 -0.12 -1.86 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.19 7.76 -51.93 -0.40 0.78 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.40 5.54 7.08 -40.82 -0.29 5.25 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 1.10 6.46 -51.93 -0.34 0.77 16 40 H 0.38 9.74 6.46 -40.82 -0.26 9.48 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.49 6.05 -51.93 -0.31 1.17 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.75 7.54 -51.93 -0.39 0.35 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.66 6.95 -51.93 -0.36 0.30 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.08 1.33 7.09 -51.93 -0.37 0.97 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -34.04 402.43 -9.83 -43.88 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -8.13 Total: 13.71 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.33 Total: -1.36 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 0.13 Total: -64.12 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.54 Total: -16.18 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.04 -9.83 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700515342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.799 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds