Wall clock time and date at job start Wed Apr 1 2020 04:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46758 * 2 1 4 4 O 1.42897 * 109.47122 * 120.00596 * 2 1 3 5 5 C 1.35679 * 116.99467 * 270.00065 * 4 2 1 6 6 C 1.38924 * 119.68384 * 179.73142 * 5 4 2 7 7 C 1.38373 * 119.10934 * 179.75470 * 6 5 4 8 8 C 1.38823 * 118.49067 * 0.50488 * 7 6 5 9 9 C 1.38053 * 119.28696 * 359.73095 * 8 7 6 10 10 N 1.31962 * 120.83262 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47227 * 240.00430 * 2 1 3 12 12 O 1.21279 * 119.99788 * 245.00173 * 11 2 1 13 13 N 1.34776 * 120.00273 * 64.99530 * 11 2 1 14 14 C 1.46501 * 120.00126 * 174.59474 * 13 11 2 15 15 C 1.53007 * 109.46588 * 64.32441 * 14 13 11 16 16 N 1.46497 * 109.46992 * 54.80482 * 15 14 13 17 17 C 1.36939 * 119.99855 * 184.97442 * 16 15 14 18 18 H 1.07998 * 120.00045 * 0.02562 * 17 16 15 19 19 C 1.38815 * 120.00043 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00067 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99942 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46712 * 89.99996 * 21 19 17 23 23 H 1.48496 * 109.46857 * 209.99595 * 21 19 17 24 24 H 1.48498 * 109.47102 * 329.99689 * 21 19 17 25 25 C 1.52995 * 109.47518 * 304.32804 * 14 13 11 26 26 C 1.53006 * 109.46710 * 299.99794 * 25 14 13 27 27 C 1.52997 * 109.47226 * 299.99949 * 26 25 14 28 28 C 1.52999 * 109.47085 * 60.00032 * 27 26 25 29 29 C 1.52994 * 109.47276 * 184.32126 * 14 13 11 30 30 H 1.09000 * 109.47196 * 299.99702 * 1 2 3 31 31 H 1.08998 * 109.47125 * 60.00086 * 1 2 3 32 32 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.43859 * 359.97438 * 6 5 4 34 34 H 1.08010 * 120.75334 * 180.23515 * 7 6 5 35 35 H 1.07995 * 120.36028 * 179.71013 * 8 7 6 36 36 H 1.08001 * 119.58279 * 180.02562 * 9 8 7 37 37 H 0.97005 * 119.99961 * 354.60397 * 13 11 2 38 38 H 1.08998 * 109.46755 * 174.80278 * 15 14 13 39 39 H 1.08999 * 109.47224 * 294.80390 * 15 14 13 40 40 H 0.96999 * 120.00616 * 4.97800 * 16 15 14 41 41 H 0.96999 * 120.00645 * 179.97438 * 20 19 17 42 42 H 1.08992 * 109.47510 * 179.97438 * 25 14 13 43 43 H 1.09001 * 109.47412 * 59.99181 * 25 14 13 44 44 H 1.09002 * 109.46988 * 179.97438 * 26 25 14 45 45 H 1.09001 * 109.47091 * 60.00218 * 26 25 14 46 46 H 1.09001 * 109.47227 * 180.02562 * 27 26 25 47 47 H 1.09005 * 109.46618 * 300.00327 * 27 26 25 48 48 H 1.09001 * 109.46963 * 59.99896 * 28 27 26 49 49 H 1.09003 * 109.47029 * 180.02562 * 28 27 26 50 50 H 1.09001 * 109.47499 * 180.02562 * 29 14 13 51 51 H 1.08998 * 109.47596 * 300.00896 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 0.0828 2.2741 6 6 2.6688 -0.5160 3.4413 7 6 2.8790 0.2677 4.5622 8 6 2.6130 1.6277 4.4788 9 6 2.1556 2.1545 3.2875 10 7 1.9695 1.3823 2.2337 11 6 2.0324 -0.7103 -1.2305 12 8 2.6530 -1.7466 -1.1216 13 7 1.7919 -0.1941 -2.4521 14 6 2.3796 -0.8185 -3.6399 15 6 1.8115 -2.2292 -3.8083 16 7 0.3483 -2.1657 -3.8406 17 6 -0.3864 -3.3206 -3.8823 18 1 0.1129 -4.2782 -3.8908 19 6 -1.7729 -3.2605 -3.9135 20 7 -2.3814 -2.0935 -3.9026 21 14 -2.7750 -4.8359 -3.9695 22 1 -3.0733 -5.2823 -2.5849 23 1 -4.0471 -4.5878 -4.6944 24 1 -2.0014 -5.8899 -4.6736 25 6 3.8988 -0.8968 -3.4762 26 6 4.4668 0.5139 -3.3077 27 6 4.1294 1.3505 -4.5435 28 6 2.6102 1.4287 -4.7072 29 6 2.0422 0.0180 -4.8756 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.8610 -1.5782 3.4723 34 1 3.2376 -0.1695 5.4824 35 1 2.7619 2.2666 5.3366 36 1 1.9476 3.2119 3.2171 37 1 1.2297 0.5910 -2.5447 38 1 2.1773 -2.6592 -4.7407 39 1 2.1298 -2.8513 -2.9718 40 1 -0.1002 -1.3057 -3.8327 41 1 -3.3502 -2.0514 -3.9247 42 1 4.3360 -1.3617 -4.3597 43 1 4.1392 -1.4927 -2.5958 44 1 5.5491 0.4582 -3.1906 45 1 4.0296 0.9785 -2.4239 46 1 4.5345 2.3554 -4.4236 47 1 4.5667 0.8858 -5.4272 48 1 2.1730 1.8933 -3.8234 49 1 2.3699 2.0243 -5.5878 50 1 2.4791 -0.4468 -5.7595 51 1 0.9599 0.0738 -4.9923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700515342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:14 Heat of formation + Delta-G solvation = -53.378200 kcal Electronic energy + Delta-G solvation = -32216.833694 eV Core-core repulsion = 28115.672261 eV Total energy + Delta-G solvation = -4101.161432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.00203 -41.35818 -39.52234 -38.29011 -36.40130 -34.83848 -33.71778 -33.39625 -32.55130 -31.71769 -31.07464 -30.43821 -27.02423 -26.02475 -24.71195 -24.57761 -24.01507 -23.44996 -22.09907 -21.42138 -20.13619 -19.49483 -19.24995 -18.73010 -17.41265 -16.93670 -16.85722 -16.71047 -16.56943 -16.18163 -15.85715 -15.55626 -15.42954 -15.16945 -14.94977 -14.68692 -14.61765 -14.37686 -14.21945 -13.98266 -13.79679 -13.45621 -13.40826 -13.14874 -13.08223 -12.91945 -12.86217 -12.76645 -12.75615 -12.59930 -12.20727 -12.11656 -11.98662 -11.87671 -11.46838 -11.16290 -11.08113 -10.98569 -10.89569 -10.58245 -10.40274 -9.91359 -9.47939 -8.93922 -7.94841 -5.20241 0.21474 0.33812 1.42948 1.44846 1.52467 1.53445 1.64495 2.51136 2.56245 2.84343 3.29109 3.37396 3.54727 3.72803 3.83722 3.86220 3.90121 3.96786 4.05873 4.10482 4.12737 4.23899 4.24605 4.36540 4.46462 4.49829 4.59252 4.60717 4.61611 4.65426 4.78295 4.81925 4.86123 4.88223 5.05194 5.08731 5.10608 5.14943 5.19379 5.25006 5.29496 5.31284 5.37622 5.44713 5.48148 5.52844 5.55467 5.71423 6.20962 6.27970 6.59807 6.87928 7.28057 7.35673 8.09498 8.39412 9.27726 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.003791 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.212425 B = 7383.786897 C = 9613.890719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.086 3.914 3 H 0.127 0.873 4 O -0.305 6.305 5 C 0.291 3.709 6 C -0.209 4.209 7 C -0.036 4.036 8 C -0.203 4.203 9 C 0.127 3.873 10 N -0.559 5.559 11 C 0.519 3.481 12 O -0.558 6.558 13 N -0.691 5.691 14 C 0.186 3.814 15 C 0.142 3.858 16 N -0.726 5.726 17 C -0.243 4.243 18 H 0.059 0.941 19 C -0.065 4.065 20 N -0.959 5.959 21 Si 0.964 3.036 22 H -0.293 1.293 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.125 4.125 26 C -0.107 4.107 27 C -0.111 4.111 28 C -0.113 4.113 29 C -0.112 4.112 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.138 0.862 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.189 0.811 37 H 0.407 0.593 38 H 0.018 0.982 39 H 0.013 0.987 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.778 16.023 12.031 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 H 0.144 0.856 4 O -0.212 6.212 5 C 0.114 3.886 6 C -0.230 4.230 7 C -0.061 4.061 8 C -0.223 4.223 9 C -0.028 4.028 10 N -0.284 5.284 11 C 0.305 3.695 12 O -0.436 6.436 13 N -0.344 5.344 14 C 0.100 3.900 15 C 0.014 3.986 16 N -0.369 5.369 17 C -0.375 4.375 18 H 0.077 0.923 19 C -0.258 4.258 20 N -0.609 5.609 21 Si 0.794 3.206 22 H -0.221 1.221 23 H -0.215 1.215 24 H -0.201 1.201 25 C -0.164 4.164 26 C -0.144 4.144 27 C -0.149 4.149 28 C -0.150 4.150 29 C -0.150 4.150 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.156 0.844 34 H 0.191 0.809 35 H 0.192 0.808 36 H 0.206 0.794 37 H 0.243 0.757 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.212 0.788 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.953 15.169 11.240 23.476 hybrid contribution -1.192 -1.207 0.490 1.766 sum 12.761 13.962 11.730 22.257 Atomic orbital electron populations 1.22019 0.92076 1.02286 1.04364 1.22015 0.95714 0.97691 0.81964 0.85557 1.86368 1.80310 1.35910 1.18593 1.20235 0.93031 0.88213 0.87136 1.21341 1.07037 1.02698 0.91931 1.21847 0.92925 0.93731 0.97597 1.22417 1.03184 0.96236 1.00471 1.23087 0.92138 1.00326 0.87240 1.67232 1.22355 1.04407 1.34357 1.20412 0.79301 0.84718 0.85109 1.90632 1.42206 1.23795 1.86990 1.45671 1.51657 1.32393 1.04632 1.20475 0.93082 0.91546 0.84901 1.21147 0.84428 0.95934 0.97073 1.42226 1.00460 1.05237 1.88976 1.19491 0.89390 0.87458 1.41202 0.92303 1.25348 0.97196 0.99467 1.03789 1.69754 1.08023 1.23766 1.59387 0.85279 0.78333 0.79842 0.77152 1.22061 1.21452 1.20056 1.21837 0.93027 0.98961 1.02551 1.21415 1.00300 0.93998 0.98721 1.21516 0.95499 1.00299 0.97546 1.21540 0.96010 0.94833 1.02650 1.21716 1.01189 0.96414 0.95719 0.90112 0.89245 0.94309 0.84409 0.80903 0.80847 0.79388 0.75658 0.96446 0.96870 0.78802 0.94003 0.90499 0.92584 0.91282 0.93033 0.90277 0.91376 0.91610 0.90144 0.90226 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 9.47 71.98 0.68 -4.18 16 2 C 0.09 2.81 2.90 29.85 0.09 2.90 16 3 H 0.13 3.53 6.98 -2.39 -0.02 3.52 16 4 O -0.30 -10.89 9.30 -70.98 -0.66 -11.55 16 5 C 0.29 8.44 7.45 84.79 0.63 9.08 16 6 C -0.21 -4.91 10.04 22.47 0.23 -4.68 16 7 C -0.04 -0.54 10.17 22.44 0.23 -0.31 16 8 C -0.20 -2.54 10.11 22.37 0.23 -2.32 16 9 C 0.13 2.09 11.18 84.63 0.95 3.04 16 10 N -0.56 -13.81 8.65 -308.94 -2.67 -16.48 16 11 C 0.52 19.58 6.51 87.66 0.57 20.15 16 12 O -0.56 -25.74 12.81 15.97 0.20 -25.53 16 13 N -0.69 -22.65 3.45 -422.93 -1.46 -24.11 16 14 C 0.19 6.26 0.32 3.60 0.00 6.27 16 15 C 0.14 6.40 4.94 86.38 0.43 6.83 16 16 N -0.73 -38.11 5.19 -343.45 -1.78 -39.89 16 17 C -0.24 -14.39 9.99 84.03 0.84 -13.55 16 18 H 0.06 3.51 7.83 -2.91 -0.02 3.48 16 19 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 20 N -0.96 -58.16 13.06 21.65 0.28 -57.88 16 21 Si 0.96 48.12 29.55 68.60 2.03 50.14 16 22 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 C -0.13 -3.78 4.45 30.59 0.14 -3.65 16 26 C -0.11 -2.48 5.77 30.60 0.18 -2.30 16 27 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 28 C -0.11 -2.33 5.75 30.60 0.18 -2.16 16 29 C -0.11 -3.21 4.64 30.59 0.14 -3.07 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.09 2.67 7.76 -2.39 -0.02 2.66 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.41 11.46 7.08 -92.70 -0.66 10.81 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.01 0.69 6.46 -2.39 -0.02 0.67 16 40 H 0.38 20.05 6.46 -92.71 -0.60 19.45 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 2.05 6.05 -2.39 -0.01 2.04 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.27 7.54 -2.39 -0.02 1.25 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 48 H 0.07 1.29 6.95 -2.39 -0.02 1.28 16 49 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.06 1.92 7.09 -2.39 -0.02 1.90 16 Total: -1.00 -77.99 402.43 1.77 -76.21 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -0.31 Total: 42.31 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.14 Total: 6.78 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -5.63 Total: -138.36 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.46 Total: -37.09 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.14 kcal Total: -77.99 1.77 -76.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700515342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.836 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds