Wall clock time and date at job start Wed Apr 1 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47006 * 2 1 4 4 C 1.47020 * 111.00170 * 46.36534 * 3 2 1 5 5 C 1.53092 * 109.25811 * 182.39145 * 4 3 2 6 6 O 1.43020 * 109.25838 * 303.14896 * 5 4 3 7 7 C 1.43009 * 113.73780 * 58.67179 * 6 5 4 8 8 C 1.47020 * 110.99771 * 169.99609 * 3 2 1 9 9 H 1.09001 * 109.50379 * 297.58580 * 8 3 2 10 10 C 1.50694 * 109.50570 * 57.67523 * 8 3 2 11 11 O 1.21286 * 119.99993 * 0.02562 * 10 8 3 12 12 N 1.34776 * 120.00295 * 179.97438 * 10 8 3 13 13 C 1.46498 * 120.00445 * 179.97438 * 12 10 8 14 14 C 1.50691 * 109.47077 * 180.02562 * 13 12 10 15 15 C 1.38243 * 120.00061 * 269.72322 * 14 13 12 16 16 C 1.38231 * 119.99977 * 179.75051 * 15 14 13 17 17 C 1.38234 * 119.99883 * 0.54433 * 16 15 14 18 18 C 1.50703 * 120.00032 * 179.72585 * 17 16 15 19 19 N 1.46500 * 109.47453 * 269.98460 * 18 17 16 20 20 C 1.36932 * 120.00142 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99940 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00297 * 180.02562 * 20 19 18 23 23 N 1.31611 * 120.00099 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99543 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47289 * 90.00267 * 24 22 20 26 26 H 1.48500 * 109.47234 * 209.99932 * 24 22 20 27 27 H 1.48500 * 109.47108 * 330.00140 * 24 22 20 28 28 C 1.38236 * 120.00282 * 359.71196 * 17 16 15 29 29 C 1.38234 * 120.00195 * 90.00319 * 14 13 12 30 30 H 1.09001 * 109.46801 * 300.00064 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99660 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99782 * 2 1 3 34 34 H 1.08993 * 109.46955 * 240.00219 * 2 1 3 35 35 H 1.09002 * 109.50618 * 302.32482 * 4 3 2 36 36 H 1.09003 * 109.50594 * 62.45036 * 4 3 2 37 37 H 1.09004 * 109.50425 * 183.21551 * 5 4 3 38 38 H 1.08996 * 109.54553 * 63.10514 * 5 4 3 39 39 H 1.09005 * 109.50639 * 181.39508 * 7 6 5 40 40 H 1.09004 * 109.54505 * 61.28750 * 7 6 5 41 41 H 0.97002 * 119.99850 * 359.97438 * 12 10 8 42 42 H 1.09000 * 109.46582 * 300.00385 * 13 12 10 43 43 H 1.08998 * 109.47121 * 59.99485 * 13 12 10 44 44 H 1.07999 * 119.99827 * 0.02562 * 15 14 13 45 45 H 1.07997 * 120.00153 * 180.27914 * 16 15 14 46 46 H 1.09005 * 109.46798 * 29.98403 * 18 17 16 47 47 H 1.09002 * 109.47180 * 149.97980 * 18 17 16 48 48 H 0.96997 * 119.99955 * 359.97438 * 19 18 17 49 49 H 0.97008 * 119.99688 * 180.02562 * 23 22 20 50 50 H 1.07998 * 120.00278 * 179.97438 * 28 17 16 51 51 H 1.08004 * 119.99965 * 359.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3024 2.1974 0.9934 5 6 1.8009 3.6430 0.9184 6 8 3.2164 3.6649 1.1214 7 6 3.9464 2.8844 0.1711 8 6 3.4697 1.4311 0.2384 9 1 3.6897 1.0205 1.2239 10 6 4.1789 0.6195 -0.8148 11 8 3.5404 0.0579 -1.6796 12 7 5.5227 0.5185 -0.7963 13 6 6.2122 -0.2709 -1.8198 14 6 7.6983 -0.2230 -1.5747 15 6 8.4639 0.7678 -2.1608 16 6 9.8263 0.8148 -1.9318 17 6 10.4249 -0.1355 -1.1259 18 6 11.9111 -0.0879 -0.8812 19 7 12.6002 -0.8776 -1.9048 20 6 13.9654 -0.9814 -1.8857 21 1 14.5343 -0.4806 -1.1162 22 6 14.6184 -1.7292 -2.8559 23 7 15.9306 -1.8285 -2.8378 24 14 13.6344 -2.5947 -4.1871 25 1 13.4709 -1.6871 -5.3510 26 1 14.3523 -3.8226 -4.6141 27 1 12.2979 -2.9626 -3.6547 28 6 9.6602 -1.1293 -0.5441 29 6 8.2969 -1.1730 -0.7686 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 0.2332 2.1698 0.7827 36 1 1.4877 1.7997 1.9912 37 1 1.3131 4.2368 1.6915 38 1 1.5673 4.0589 -0.0617 39 1 5.0104 2.9296 0.4036 40 1 3.7760 3.2773 -0.8313 41 1 6.0335 0.9686 -0.1053 42 1 5.8697 -1.3047 -1.7731 43 1 5.9925 0.1403 -2.8051 44 1 7.9968 1.5076 -2.7939 45 1 10.4237 1.5914 -2.3860 46 1 12.2541 0.9458 -0.9279 47 1 12.1306 -0.4993 0.1040 48 1 12.0892 -1.3277 -2.5956 49 1 16.3869 -2.3508 -3.5160 50 1 10.1279 -1.8720 0.0852 51 1 7.6994 -1.9495 -0.3140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715193321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:52 Heat of formation + Delta-G solvation = -24.352726 kcal Electronic energy + Delta-G solvation = -29859.211308 eV Core-core repulsion = 25759.308515 eV Total energy + Delta-G solvation = -4099.902793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02804 -39.63342 -38.87431 -36.67311 -35.63961 -34.53494 -32.76200 -31.88903 -31.11873 -30.89049 -30.51686 -27.76031 -26.90443 -25.36890 -24.24140 -22.72001 -22.66055 -22.09954 -21.36602 -20.70468 -20.39034 -18.09881 -17.84414 -17.05222 -16.78515 -16.38288 -15.86110 -15.70861 -15.59076 -15.28875 -15.08615 -14.91798 -14.73356 -14.63180 -14.49765 -13.83524 -13.71620 -13.38391 -13.28843 -13.06288 -12.99065 -12.65634 -12.48540 -12.31060 -12.22696 -12.12093 -12.06010 -11.85998 -11.55342 -11.42809 -11.04217 -10.99377 -10.84560 -10.68055 -10.42941 -10.18056 -9.87236 -9.63868 -9.43602 -8.96175 -8.86460 -8.82323 -8.61706 -7.29267 -5.80926 -3.17321 1.20739 1.46524 2.20259 2.70299 3.18125 3.35890 3.39909 3.42531 3.43921 3.83238 4.19824 4.30479 4.40292 4.49137 4.51858 4.56227 4.65817 4.68169 4.79801 4.83724 4.92017 5.02024 5.02542 5.07439 5.14807 5.18016 5.18533 5.24923 5.37018 5.43558 5.46284 5.48882 5.56490 5.68710 5.69337 5.73270 5.77326 6.00427 6.00991 6.09425 6.32845 6.36231 6.45083 6.46964 6.50104 6.52744 6.55247 6.92982 7.04122 7.12597 7.84524 7.93874 8.37642 9.16075 9.88299 10.07948 11.37081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.001773 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.374936 B =15786.762486 C =16438.182419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.036 3.964 3 N -0.515 5.515 4 C 0.012 3.988 5 C 0.059 3.941 6 O -0.378 6.378 7 C 0.075 3.925 8 C 0.030 3.970 9 H 0.076 0.924 10 C 0.520 3.480 11 O -0.519 6.519 12 N -0.723 5.723 13 C 0.167 3.833 14 C -0.125 4.125 15 C -0.103 4.103 16 C -0.107 4.107 17 C -0.070 4.070 18 C 0.189 3.811 19 N -0.750 5.750 20 C -0.248 4.248 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.932 5.932 24 Si 0.883 3.117 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.107 4.107 29 C -0.104 4.104 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.402 0.598 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.363 0.637 49 H 0.260 0.740 50 H 0.126 0.874 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.868 8.922 9.006 35.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.091 4.091 3 N -0.241 5.241 4 C -0.116 4.116 5 C -0.018 4.018 6 O -0.296 6.296 7 C -0.003 4.003 8 C -0.082 4.082 9 H 0.094 0.906 10 C 0.305 3.695 11 O -0.394 6.394 12 N -0.375 5.375 13 C 0.044 3.956 14 C -0.125 4.125 15 C -0.121 4.121 16 C -0.126 4.126 17 C -0.071 4.071 18 C 0.062 3.938 19 N -0.396 5.396 20 C -0.377 4.377 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.713 3.287 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.126 4.126 29 C -0.122 4.122 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.237 0.763 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.139 0.861 45 H 0.144 0.856 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.196 0.804 49 H 0.070 0.930 50 H 0.144 0.856 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -33.090 8.831 8.121 35.198 hybrid contribution -0.210 -1.106 -0.056 1.128 sum -33.300 7.724 8.065 35.123 Atomic orbital electron populations 1.21917 0.94969 1.02071 1.02108 1.22529 0.95707 0.88109 1.02752 1.62106 1.00947 1.12633 1.48433 1.22963 1.00237 0.94373 0.94030 1.22765 0.81181 0.95342 1.02463 1.88033 1.18381 1.69506 1.53664 1.22593 0.96392 0.87129 0.94140 1.22329 0.90465 0.97874 0.97559 0.90607 1.20185 0.82141 0.81197 0.85944 1.90638 1.65211 1.46400 1.37194 1.46157 1.06279 1.52989 1.32110 1.20166 0.87610 0.96283 0.91508 1.19694 0.94239 0.97679 1.00919 1.21022 0.93930 0.97831 0.99366 1.21174 0.94346 0.99212 0.97866 1.20455 0.97126 0.94086 0.95387 1.19677 0.84968 0.95952 0.93177 1.42679 1.04462 1.60444 1.32003 1.19055 0.80795 1.26669 1.11220 0.89079 1.24656 0.95299 1.00159 0.98787 1.69699 1.06373 1.45142 1.36740 0.86562 0.79564 0.79667 0.82864 1.20981 1.21630 1.20286 1.21168 0.93323 0.98120 0.99975 1.21012 0.94919 0.98228 0.98052 0.92812 0.91657 0.91999 0.95503 0.87015 0.88454 0.93827 0.88079 0.91903 0.87788 0.91402 0.76303 0.90687 0.90525 0.86131 0.85553 0.94467 0.94552 0.80448 0.92978 0.85627 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.18 37.16 0.34 -0.65 16 2 C 0.04 0.31 5.34 -3.82 -0.02 0.29 16 3 N -0.51 -4.35 4.51 -227.72 -1.03 -5.38 16 4 C 0.01 0.08 4.94 -3.71 -0.02 0.06 16 5 C 0.06 0.36 7.01 37.21 0.26 0.63 16 6 O -0.38 -3.08 10.83 -35.23 -0.38 -3.46 16 7 C 0.08 0.54 6.16 37.21 0.23 0.77 16 8 C 0.03 0.24 2.36 -68.75 -0.16 0.08 16 9 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 10 C 0.52 4.98 6.88 -10.99 -0.08 4.91 16 11 O -0.52 -6.71 13.70 5.55 0.08 -6.63 16 12 N -0.72 -5.83 5.45 -61.48 -0.34 -6.16 16 13 C 0.17 1.57 5.80 -5.20 -0.03 1.54 16 14 C -0.12 -1.33 5.25 -104.63 -0.55 -1.88 16 15 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 16 C -0.11 -1.47 9.70 -39.59 -0.38 -1.85 16 17 C -0.07 -1.08 5.25 -104.62 -0.55 -1.63 16 18 C 0.19 3.56 6.38 -5.19 -0.03 3.53 16 19 N -0.75 -17.73 5.40 -61.08 -0.33 -18.06 16 20 C -0.25 -6.98 10.47 -15.06 -0.16 -7.13 16 21 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -29.14 13.97 55.49 0.78 -28.37 16 24 Si 0.88 22.20 27.74 -169.99 -4.71 17.48 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 27 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 28 C -0.11 -1.48 9.70 -39.58 -0.38 -1.86 16 29 C -0.10 -1.19 9.70 -39.58 -0.38 -1.57 16 30 H 0.05 0.29 6.28 -51.93 -0.33 -0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.03 0.22 8.08 -51.93 -0.42 -0.20 16 34 H 0.11 1.22 5.49 -51.93 -0.29 0.94 16 35 H 0.10 0.50 6.05 -51.93 -0.31 0.18 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.56 7.68 -51.93 -0.40 0.16 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.40 2.54 7.96 -40.82 -0.32 2.21 16 42 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 43 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 47 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 48 H 0.36 8.54 5.52 -40.82 -0.23 8.31 16 49 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 50 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 51 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 406.65 15.07 6.13 6.13 Total: -1.00 -33.67 406.65 -10.42 -44.09 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -8.21 Total: 6.59 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.40 Total: -6.23 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.92 Total: -57.97 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.31 Total: -10.09 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.67 -10.42 -44.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715193321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.737 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds