Wall clock time and date at job start Wed Apr 1 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47006 * 2 1 4 4 C 1.47020 * 111.00170 * 46.36534 * 3 2 1 5 5 C 1.53092 * 109.25811 * 182.39145 * 4 3 2 6 6 O 1.43020 * 109.25838 * 303.14896 * 5 4 3 7 7 C 1.43009 * 113.73780 * 58.67179 * 6 5 4 8 8 C 1.47020 * 110.99771 * 169.99609 * 3 2 1 9 9 H 1.09001 * 109.50379 * 297.58580 * 8 3 2 10 10 C 1.50694 * 109.50570 * 57.67523 * 8 3 2 11 11 O 1.21286 * 119.99993 * 0.02562 * 10 8 3 12 12 N 1.34776 * 120.00295 * 179.97438 * 10 8 3 13 13 C 1.46498 * 120.00445 * 179.97438 * 12 10 8 14 14 C 1.50691 * 109.47077 * 180.02562 * 13 12 10 15 15 C 1.38243 * 120.00061 * 269.72322 * 14 13 12 16 16 C 1.38231 * 119.99977 * 179.75051 * 15 14 13 17 17 C 1.38234 * 119.99883 * 0.54433 * 16 15 14 18 18 C 1.50703 * 120.00032 * 179.72585 * 17 16 15 19 19 N 1.46500 * 109.47453 * 269.98460 * 18 17 16 20 20 C 1.36932 * 120.00142 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99940 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00297 * 180.02562 * 20 19 18 23 23 N 1.31611 * 120.00099 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99543 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47289 * 90.00267 * 24 22 20 26 26 H 1.48500 * 109.47234 * 209.99932 * 24 22 20 27 27 H 1.48500 * 109.47108 * 330.00140 * 24 22 20 28 28 C 1.38236 * 120.00282 * 359.71196 * 17 16 15 29 29 C 1.38234 * 120.00195 * 90.00319 * 14 13 12 30 30 H 1.09001 * 109.46801 * 300.00064 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99660 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99782 * 2 1 3 34 34 H 1.08993 * 109.46955 * 240.00219 * 2 1 3 35 35 H 1.09002 * 109.50618 * 302.32482 * 4 3 2 36 36 H 1.09003 * 109.50594 * 62.45036 * 4 3 2 37 37 H 1.09004 * 109.50425 * 183.21551 * 5 4 3 38 38 H 1.08996 * 109.54553 * 63.10514 * 5 4 3 39 39 H 1.09005 * 109.50639 * 181.39508 * 7 6 5 40 40 H 1.09004 * 109.54505 * 61.28750 * 7 6 5 41 41 H 0.97002 * 119.99850 * 359.97438 * 12 10 8 42 42 H 1.09000 * 109.46582 * 300.00385 * 13 12 10 43 43 H 1.08998 * 109.47121 * 59.99485 * 13 12 10 44 44 H 1.07999 * 119.99827 * 0.02562 * 15 14 13 45 45 H 1.07997 * 120.00153 * 180.27914 * 16 15 14 46 46 H 1.09005 * 109.46798 * 29.98403 * 18 17 16 47 47 H 1.09002 * 109.47180 * 149.97980 * 18 17 16 48 48 H 0.96997 * 119.99955 * 359.97438 * 19 18 17 49 49 H 0.97008 * 119.99688 * 180.02562 * 23 22 20 50 50 H 1.07998 * 120.00278 * 179.97438 * 28 17 16 51 51 H 1.08004 * 119.99965 * 359.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3024 2.1974 0.9934 5 6 1.8009 3.6430 0.9184 6 8 3.2164 3.6649 1.1214 7 6 3.9464 2.8844 0.1711 8 6 3.4697 1.4311 0.2384 9 1 3.6897 1.0205 1.2239 10 6 4.1789 0.6195 -0.8148 11 8 3.5404 0.0579 -1.6796 12 7 5.5227 0.5185 -0.7963 13 6 6.2122 -0.2709 -1.8198 14 6 7.6983 -0.2230 -1.5747 15 6 8.4639 0.7678 -2.1608 16 6 9.8263 0.8148 -1.9318 17 6 10.4249 -0.1355 -1.1259 18 6 11.9111 -0.0879 -0.8812 19 7 12.6002 -0.8776 -1.9048 20 6 13.9654 -0.9814 -1.8857 21 1 14.5343 -0.4806 -1.1162 22 6 14.6184 -1.7292 -2.8559 23 7 15.9306 -1.8285 -2.8378 24 14 13.6344 -2.5947 -4.1871 25 1 13.4709 -1.6871 -5.3510 26 1 14.3523 -3.8226 -4.6141 27 1 12.2979 -2.9626 -3.6547 28 6 9.6602 -1.1293 -0.5441 29 6 8.2969 -1.1730 -0.7686 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 0.2332 2.1698 0.7827 36 1 1.4877 1.7997 1.9912 37 1 1.3131 4.2368 1.6915 38 1 1.5673 4.0589 -0.0617 39 1 5.0104 2.9296 0.4036 40 1 3.7760 3.2773 -0.8313 41 1 6.0335 0.9686 -0.1053 42 1 5.8697 -1.3047 -1.7731 43 1 5.9925 0.1403 -2.8051 44 1 7.9968 1.5076 -2.7939 45 1 10.4237 1.5914 -2.3860 46 1 12.2541 0.9458 -0.9279 47 1 12.1306 -0.4993 0.1040 48 1 12.0892 -1.3277 -2.5956 49 1 16.3869 -2.3508 -3.5160 50 1 10.1279 -1.8720 0.0852 51 1 7.6994 -1.9495 -0.3140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715193321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:51 Heat of formation + Delta-G solvation = -48.759375 kcal Electronic energy + Delta-G solvation = -29860.269660 eV Core-core repulsion = 25759.308515 eV Total energy + Delta-G solvation = -4100.961145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.69348 -40.55404 -39.62513 -37.35450 -36.91863 -35.77992 -33.98610 -33.12718 -31.90585 -31.86919 -31.63716 -28.83987 -27.64934 -26.30459 -25.30988 -23.84047 -23.64198 -23.27145 -22.03388 -21.77117 -21.08261 -19.87794 -18.77343 -17.70876 -17.37007 -17.16627 -16.70928 -16.69198 -16.60240 -16.31508 -16.04272 -15.88888 -15.71345 -15.52820 -15.31843 -15.11255 -14.79220 -14.48494 -14.35970 -14.07307 -14.03159 -13.88684 -13.50711 -13.24599 -13.15834 -13.14599 -12.85608 -12.82488 -12.66851 -12.37890 -12.19968 -12.07192 -11.92860 -11.90759 -11.77252 -11.55961 -11.04615 -11.04091 -10.56041 -10.17966 -9.84021 -9.67893 -9.40212 -9.34480 -8.05622 -5.39616 0.20168 0.48716 1.36371 1.38535 1.46185 1.47640 1.99237 2.45525 2.62800 2.77646 2.95711 3.25773 3.60214 3.63065 3.72471 3.85273 3.88238 3.90991 3.94194 4.01109 4.10877 4.12901 4.18897 4.27042 4.30932 4.39890 4.53229 4.54720 4.58689 4.63421 4.67901 4.68937 4.76256 4.87946 4.88250 4.90742 4.95502 5.05606 5.12314 5.18455 5.23475 5.38444 5.43267 5.58524 5.72255 5.78346 5.78439 5.94603 6.03657 6.04125 6.18056 6.46147 7.03862 7.14705 7.78936 7.98908 9.15561 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.001773 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.374936 B =15786.762486 C =16438.182419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.038 3.962 3 N -0.530 5.530 4 C 0.014 3.986 5 C 0.056 3.944 6 O -0.392 6.392 7 C 0.077 3.923 8 C 0.034 3.966 9 H 0.084 0.916 10 C 0.522 3.478 11 O -0.554 6.554 12 N -0.711 5.711 13 C 0.173 3.827 14 C -0.108 4.108 15 C -0.096 4.096 16 C -0.115 4.115 17 C -0.091 4.091 18 C 0.188 3.812 19 N -0.752 5.752 20 C -0.238 4.238 21 H 0.060 0.940 22 C -0.060 4.060 23 N -0.981 5.981 24 Si 0.953 3.047 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.256 1.256 28 C -0.116 4.116 29 C -0.098 4.098 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.045 0.955 37 H 0.122 0.878 38 H 0.060 0.940 39 H 0.122 0.878 40 H 0.060 0.940 41 H 0.413 0.587 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.144 0.856 45 H 0.126 0.874 46 H 0.036 0.964 47 H 0.034 0.966 48 H 0.365 0.635 49 H 0.259 0.741 50 H 0.124 0.876 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.101 9.267 9.136 38.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 N -0.257 5.257 4 C -0.113 4.113 5 C -0.020 4.020 6 O -0.310 6.310 7 C 0.000 4.000 8 C -0.078 4.078 9 H 0.102 0.898 10 C 0.308 3.692 11 O -0.432 6.432 12 N -0.364 5.364 13 C 0.050 3.950 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.133 4.133 17 C -0.092 4.092 18 C 0.063 3.937 19 N -0.398 5.398 20 C -0.368 4.368 21 H 0.078 0.922 22 C -0.252 4.252 23 N -0.631 5.631 24 Si 0.781 3.219 25 H -0.203 1.203 26 H -0.220 1.220 27 H -0.181 1.181 28 C -0.134 4.134 29 C -0.116 4.116 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.140 0.860 40 H 0.078 0.922 41 H 0.250 0.750 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.162 0.838 45 H 0.144 0.856 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.198 0.802 49 H 0.068 0.932 50 H 0.142 0.858 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -36.357 9.212 8.297 38.413 hybrid contribution 0.735 -1.129 0.000 1.347 sum -35.623 8.083 8.297 37.458 Atomic orbital electron populations 1.21874 0.93524 1.02604 1.02492 1.22418 0.96928 0.88169 1.01392 1.62097 1.01365 1.12677 1.49549 1.23018 1.00728 0.94072 0.93528 1.22927 0.80445 0.95482 1.03184 1.88017 1.19400 1.69627 1.53950 1.22645 0.97324 0.86352 0.93723 1.22320 0.90290 0.98109 0.97110 0.89828 1.20461 0.82279 0.80727 0.85722 1.90639 1.65990 1.47904 1.38686 1.46012 1.05937 1.52492 1.31961 1.20059 0.86614 0.96520 0.91836 1.19800 0.94759 0.96737 0.99571 1.21226 0.92911 0.98246 0.99070 1.21226 0.95456 0.98904 0.97722 1.20147 0.94925 0.96199 0.97923 1.19735 0.87458 0.94846 0.91698 1.42695 1.02881 1.61019 1.33208 1.19057 0.82843 1.25146 1.09788 0.92217 1.25469 0.96326 1.01713 1.01666 1.69874 1.08391 1.46767 1.38063 0.85433 0.78743 0.78095 0.79672 1.20323 1.22013 1.18075 1.21211 0.94320 0.97765 1.00136 1.21204 0.94024 0.98720 0.97679 0.91343 0.92242 0.91458 0.95565 0.89619 0.87224 0.93672 0.86006 0.92131 0.86005 0.92185 0.75007 0.90750 0.90550 0.83814 0.85616 0.94607 0.94792 0.80166 0.93228 0.85837 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.18 71.98 0.66 -1.05 16 2 C 0.04 0.61 5.34 86.31 0.46 1.07 16 3 N -0.53 -8.22 4.51 -874.37 -3.94 -12.16 16 4 C 0.01 0.15 4.94 86.31 0.43 0.57 16 5 C 0.06 0.57 7.01 72.01 0.50 1.08 16 6 O -0.39 -5.57 10.83 -148.98 -1.61 -7.19 16 7 C 0.08 0.95 6.16 72.02 0.44 1.40 16 8 C 0.03 0.48 2.36 44.18 0.10 0.59 16 9 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 10 C 0.52 9.13 6.88 87.66 0.60 9.73 16 11 O -0.55 -13.84 13.70 -3.05 -0.04 -13.88 16 12 N -0.71 -9.64 5.45 -466.81 -2.55 -12.19 16 13 C 0.17 2.76 5.80 85.63 0.50 3.26 16 14 C -0.11 -1.96 5.25 -19.87 -0.10 -2.07 16 15 C -0.10 -1.90 9.70 22.27 0.22 -1.68 16 16 C -0.11 -2.92 9.70 22.27 0.22 -2.70 16 17 C -0.09 -2.71 5.25 -19.86 -0.10 -2.82 16 18 C 0.19 7.10 6.38 85.63 0.55 7.65 16 19 N -0.75 -35.42 5.40 -347.16 -1.87 -37.30 16 20 C -0.24 -13.63 10.47 84.03 0.88 -12.75 16 21 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 22 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 23 N -0.98 -62.91 13.97 21.65 0.30 -62.61 16 24 Si 0.95 45.90 27.74 68.60 1.90 47.80 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.26 -11.30 6.52 99.48 0.65 -10.66 16 28 C -0.12 -2.99 9.70 22.27 0.22 -2.77 16 29 C -0.10 -1.96 9.70 22.27 0.22 -1.75 16 30 H 0.07 0.58 6.28 -2.39 -0.01 0.57 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.03 0.41 8.08 -2.39 -0.02 0.39 16 34 H 0.09 1.87 5.49 -2.39 -0.01 1.86 16 35 H 0.11 0.87 6.05 -2.39 -0.01 0.86 16 36 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.12 0.99 7.68 -2.38 -0.02 0.97 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.41 3.94 7.96 -92.71 -0.74 3.20 16 42 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 43 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 44 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 45 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 46 H 0.04 1.36 8.09 -2.38 -0.02 1.34 16 47 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 48 H 0.37 16.70 5.52 -92.71 -0.51 16.19 16 49 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 50 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 51 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -73.79 406.65 -1.93 -75.72 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.37 Total: 27.11 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 6.25 Total: -5.32 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -8.06 Total: -124.26 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.65 Total: -21.07 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Total: -73.79 -1.93 -75.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715193321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.965 kcal (2) G-P(sol) polarization free energy of solvation -73.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds