Wall clock time and date at job start Wed Apr 1 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46946 * 2 1 4 4 O 1.42895 * 109.47155 * 239.99515 * 2 1 3 5 5 C 1.35679 * 117.00006 * 90.00237 * 4 2 1 6 6 C 1.38919 * 119.68632 * 179.72325 * 5 4 2 7 7 C 1.38371 * 119.11122 * 179.74803 * 6 5 4 8 8 C 1.38829 * 118.48435 * 0.51905 * 7 6 5 9 9 C 1.38038 * 119.29198 * 359.72363 * 8 7 6 10 10 N 1.31968 * 120.83564 * 0.02679 * 9 8 7 11 11 C 1.50697 * 109.47001 * 119.99222 * 2 1 3 12 12 O 1.21286 * 119.99682 * 119.99905 * 11 2 1 13 13 N 1.34777 * 120.00522 * 300.28150 * 11 2 1 14 14 C 1.46496 * 120.00211 * 174.73457 * 13 11 2 15 15 H 1.08997 * 109.47285 * 4.80874 * 14 13 11 16 16 C 1.53008 * 109.47162 * 244.80777 * 14 13 11 17 17 N 1.46500 * 109.46943 * 54.99912 * 16 14 13 18 18 C 1.36929 * 119.99897 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00315 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00433 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99454 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00607 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47102 * 60.00019 * 22 20 18 24 24 H 1.48500 * 109.47369 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46961 * 300.00164 * 22 20 18 26 26 C 1.53005 * 109.47352 * 124.81036 * 14 13 11 27 27 C 1.54267 * 110.03241 * 57.03472 * 26 14 13 28 28 C 1.54886 * 104.19737 * 217.10917 * 27 26 14 29 29 C 1.54887 * 102.74630 * 37.94277 * 28 27 26 30 30 C 1.53873 * 110.02784 * 299.87042 * 26 14 13 31 31 H 1.08998 * 109.47047 * 300.00468 * 1 2 3 32 32 H 1.09005 * 109.47114 * 60.00335 * 1 2 3 33 33 H 1.09006 * 109.47012 * 180.02562 * 1 2 3 34 34 H 1.07999 * 120.44160 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.75962 * 180.23758 * 7 6 5 36 36 H 1.08005 * 120.35498 * 179.70600 * 8 7 6 37 37 H 1.08006 * 119.58763 * 179.97438 * 9 8 7 38 38 H 0.97002 * 119.99646 * 354.73012 * 13 11 2 39 39 H 1.09000 * 109.47047 * 175.00279 * 16 14 13 40 40 H 1.09006 * 109.46799 * 295.00105 * 16 14 13 41 41 H 0.97001 * 119.99975 * 359.97438 * 17 16 14 42 42 H 0.97000 * 119.99972 * 179.97438 * 21 20 18 43 43 H 1.08997 * 110.01998 * 178.47812 * 26 14 13 44 44 H 1.08999 * 110.48568 * 335.79112 * 27 26 14 45 45 H 1.08998 * 110.48122 * 98.42992 * 27 26 14 46 46 H 1.09003 * 110.75336 * 279.62861 * 28 27 26 47 47 H 1.08999 * 110.75681 * 156.25816 * 28 27 26 48 48 H 1.09008 * 110.48602 * 203.38070 * 29 28 27 49 49 H 1.09000 * 110.60012 * 80.79881 * 29 28 27 50 50 H 1.08998 * 110.03530 * 238.56629 * 30 26 14 51 51 H 1.09000 * 110.03352 * 359.95316 * 30 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6798 -0.5141 -3.4380 7 6 2.8800 0.2677 -4.5619 8 6 2.6140 1.6277 -4.4784 9 6 2.1557 2.1544 -3.2876 10 7 1.9696 1.3823 -2.2336 11 6 2.0323 -0.7102 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7021 -0.2530 2.4546 14 6 2.0928 -1.0071 3.6483 15 1 2.7111 -1.8557 3.3557 16 6 0.8392 -1.5127 4.3652 17 7 0.0191 -2.2851 3.4287 18 6 -1.1597 -2.8410 3.8485 19 1 -1.4852 -2.7098 4.8699 20 6 -1.9371 -3.5725 2.9610 21 7 -1.5408 -3.7320 1.7161 22 14 -3.5456 -4.3303 3.5335 23 1 -4.4565 -3.2581 4.0087 24 1 -4.1808 -5.0556 2.4040 25 1 -3.2779 -5.2803 4.6431 26 6 2.8865 -0.0980 4.5888 27 6 2.0496 1.1459 4.9523 28 6 3.0845 2.2969 5.0084 29 6 4.0411 1.9535 3.8395 30 6 4.1527 0.4155 3.8813 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.8803 -1.5749 -3.4664 35 1 3.2394 -0.1693 -5.4819 36 1 2.7643 2.2669 -5.3359 37 1 1.9477 3.2119 -3.2172 38 1 1.2057 0.5755 2.5452 39 1 1.1303 -2.1473 5.2022 40 1 0.2651 -0.6633 4.7357 41 1 0.3112 -2.4027 2.5112 42 1 -2.0837 -4.2435 1.0960 43 1 3.1588 -0.6429 5.4927 44 1 1.3028 1.3414 4.1828 45 1 1.5726 1.0141 5.9235 46 1 3.6181 2.2906 5.9588 47 1 2.6011 3.2595 4.8419 48 1 5.0175 2.4113 3.9986 49 1 3.6182 2.2798 2.8894 50 1 5.0395 0.1206 4.4422 51 1 4.2022 0.0164 2.8682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724104671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:36 Heat of formation + Delta-G solvation = -32.127728 kcal Electronic energy + Delta-G solvation = -31831.185856 eV Core-core repulsion = 27730.945913 eV Total energy + Delta-G solvation = -4100.239943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.77027 -39.91208 -38.42114 -37.28054 -35.12080 -33.48600 -32.60022 -32.22554 -30.89413 -30.03649 -29.34813 -28.67501 -26.22190 -24.75063 -23.75777 -23.33944 -22.73266 -21.49768 -20.67998 -19.96048 -19.19975 -18.45056 -17.44224 -17.09009 -16.41590 -16.00095 -15.78943 -15.65017 -15.55254 -14.90890 -14.61143 -14.49448 -14.15867 -13.88739 -13.42985 -13.41131 -13.24397 -13.21786 -12.99510 -12.90908 -12.64502 -12.06226 -12.03604 -12.01998 -11.68408 -11.53270 -11.13853 -11.05202 -10.99587 -10.91238 -10.78406 -10.64117 -10.56943 -10.44404 -10.29456 -10.05401 -10.04419 -9.69069 -9.65450 -9.30790 -8.81923 -8.55839 -8.52644 -6.85270 -5.68697 -2.98102 1.06705 1.17535 2.71099 3.06309 3.46569 3.51183 3.52411 3.68018 3.78419 4.20520 4.57665 4.66096 4.70113 4.71587 4.80448 4.91332 4.94726 5.03346 5.12152 5.23660 5.28397 5.29519 5.46828 5.51049 5.61746 5.61836 5.64819 5.69043 5.73424 5.82217 5.86940 5.91562 5.93995 5.98668 6.03215 6.07968 6.09348 6.17756 6.27966 6.32683 6.34192 6.38326 6.49970 6.54368 6.62636 6.74933 7.00930 7.27845 7.73662 7.75745 7.87809 8.48647 8.62392 9.60119 10.18944 10.54348 11.52947 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007259 B = 0.004066 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3856.261234 B = 6885.139291 C = 9936.158903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 H 0.106 0.894 4 O -0.271 6.271 5 C 0.330 3.670 6 C -0.190 4.190 7 C -0.041 4.041 8 C -0.221 4.221 9 C 0.139 3.861 10 N -0.543 5.543 11 C 0.523 3.477 12 O -0.522 6.522 13 N -0.703 5.703 14 C 0.139 3.861 15 H 0.100 0.900 16 C 0.142 3.858 17 N -0.728 5.728 18 C -0.242 4.242 19 H 0.068 0.932 20 C -0.011 4.011 21 N -0.927 5.927 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.098 4.098 27 C -0.118 4.118 28 C -0.124 4.124 29 C -0.122 4.122 30 C -0.119 4.119 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.157 0.843 38 H 0.396 0.604 39 H 0.026 0.974 40 H 0.023 0.977 41 H 0.387 0.613 42 H 0.255 0.745 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.232 16.606 -6.042 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.124 0.876 4 O -0.176 6.176 5 C 0.151 3.849 6 C -0.211 4.211 7 C -0.067 4.067 8 C -0.241 4.241 9 C -0.017 4.017 10 N -0.267 5.267 11 C 0.307 3.693 12 O -0.397 6.397 13 N -0.356 5.356 14 C 0.034 3.966 15 H 0.118 0.882 16 C 0.014 3.986 17 N -0.373 5.373 18 C -0.373 4.373 19 H 0.086 0.914 20 C -0.207 4.207 21 N -0.575 5.575 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 C -0.117 4.117 27 C -0.156 4.156 28 C -0.162 4.162 29 C -0.159 4.159 30 C -0.156 4.156 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.232 0.768 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.321 15.851 -5.196 20.160 hybrid contribution -0.960 -0.337 -0.678 1.223 sum 10.361 15.514 -5.874 19.559 Atomic orbital electron populations 1.22148 0.91546 1.05451 1.02848 1.22089 0.96346 0.97074 0.82664 0.87648 1.86438 1.79295 1.34242 1.17591 1.19970 0.90303 0.87265 0.87350 1.21135 1.06077 1.02398 0.91451 1.21394 0.94296 0.93431 0.97548 1.21928 1.06048 0.96208 0.99944 1.22394 0.92718 0.99129 0.87463 1.67294 1.21950 1.04860 1.32608 1.20040 0.80182 0.84754 0.84293 1.90724 1.37071 1.25565 1.86298 1.45646 1.58098 1.26987 1.04883 1.21359 0.96874 0.94187 0.84151 0.88182 1.21043 0.90221 0.94415 0.92969 1.42295 1.22622 1.61724 1.10624 1.19144 0.96789 1.25841 0.95516 0.91425 1.24723 0.98976 1.01186 0.95837 1.69674 1.38952 1.45274 1.03599 0.86319 0.83850 0.79032 0.77245 1.21415 1.21768 1.21383 1.22089 0.94923 0.96373 0.98357 1.22418 0.97482 0.94036 1.01617 1.22497 0.97065 0.98186 0.98416 1.22327 0.99090 0.95969 0.98545 1.22156 0.97143 0.95207 1.01127 0.90469 0.91695 0.89426 0.83883 0.84294 0.84792 0.82560 0.76842 0.95584 0.95908 0.77896 0.93551 0.89916 0.91529 0.91360 0.91742 0.91909 0.92278 0.91972 0.92204 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.43 37.16 0.35 -2.33 16 2 C 0.08 1.29 2.91 -27.88 -0.08 1.21 16 3 H 0.11 1.51 6.98 -51.93 -0.36 1.15 16 4 O -0.27 -4.86 9.29 -38.65 -0.36 -5.22 16 5 C 0.33 4.98 7.45 -17.12 -0.13 4.85 16 6 C -0.19 -2.39 10.04 -39.28 -0.39 -2.78 16 7 C -0.04 -0.39 10.17 -39.31 -0.40 -0.79 16 8 C -0.22 -1.91 10.10 -39.44 -0.40 -2.31 16 9 C 0.14 1.40 11.17 -17.57 -0.20 1.20 16 10 N -0.54 -7.27 8.65 -13.33 -0.12 -7.39 16 11 C 0.52 9.67 6.34 -10.99 -0.07 9.60 16 12 O -0.52 -11.82 15.84 -14.36 -0.23 -12.04 16 13 N -0.70 -11.17 3.60 -53.80 -0.19 -11.36 16 14 C 0.14 2.31 2.04 -67.93 -0.14 2.17 16 15 H 0.10 1.95 6.91 -51.93 -0.36 1.60 16 16 C 0.14 2.81 5.84 -4.04 -0.02 2.79 16 17 N -0.73 -18.60 5.43 -59.90 -0.33 -18.93 16 18 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 22 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C -0.10 -1.24 2.82 -89.50 -0.25 -1.49 16 27 C -0.12 -1.31 5.12 -25.07 -0.13 -1.44 16 28 C -0.12 -1.18 6.91 -24.74 -0.17 -1.36 16 29 C -0.12 -1.24 6.83 -25.07 -0.17 -1.42 16 30 C -0.12 -1.43 6.19 -25.61 -0.16 -1.59 16 31 H 0.08 1.16 7.67 -51.93 -0.40 0.77 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 34 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 37 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.40 5.42 6.53 -40.82 -0.27 5.15 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.44 7.13 -51.93 -0.37 0.07 16 41 H 0.39 10.70 6.80 -40.82 -0.28 10.43 16 42 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.76 5.96 -51.93 -0.31 0.45 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.07 0.96 7.12 -51.93 -0.37 0.59 16 LS Contribution 410.51 15.07 6.19 6.19 Total: -1.00 -34.64 410.51 -10.12 -44.76 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -8.18 Total: 15.12 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.61 Total: -1.06 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: 0.09 Total: -65.41 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.59 Total: -17.26 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.64 -10.12 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724104671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.628 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds