Wall clock time and date at job start Wed Apr 1 2020 05:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46946 * 2 1 4 4 O 1.42895 * 109.47155 * 239.99515 * 2 1 3 5 5 C 1.35679 * 117.00006 * 90.00237 * 4 2 1 6 6 C 1.38919 * 119.68632 * 179.72325 * 5 4 2 7 7 C 1.38371 * 119.11122 * 179.74803 * 6 5 4 8 8 C 1.38829 * 118.48435 * 0.51905 * 7 6 5 9 9 C 1.38038 * 119.29198 * 359.72363 * 8 7 6 10 10 N 1.31968 * 120.83564 * 0.02679 * 9 8 7 11 11 C 1.50697 * 109.47001 * 119.99222 * 2 1 3 12 12 O 1.21286 * 119.99682 * 119.99905 * 11 2 1 13 13 N 1.34777 * 120.00522 * 300.28150 * 11 2 1 14 14 C 1.46496 * 120.00211 * 174.73457 * 13 11 2 15 15 H 1.08997 * 109.47285 * 4.80874 * 14 13 11 16 16 C 1.53008 * 109.47162 * 244.80777 * 14 13 11 17 17 N 1.46500 * 109.46943 * 54.99912 * 16 14 13 18 18 C 1.36929 * 119.99897 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00315 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00433 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99454 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00607 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47102 * 60.00019 * 22 20 18 24 24 H 1.48500 * 109.47369 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46961 * 300.00164 * 22 20 18 26 26 C 1.53005 * 109.47352 * 124.81036 * 14 13 11 27 27 C 1.54267 * 110.03241 * 57.03472 * 26 14 13 28 28 C 1.54886 * 104.19737 * 217.10917 * 27 26 14 29 29 C 1.54887 * 102.74630 * 37.94277 * 28 27 26 30 30 C 1.53873 * 110.02784 * 299.87042 * 26 14 13 31 31 H 1.08998 * 109.47047 * 300.00468 * 1 2 3 32 32 H 1.09005 * 109.47114 * 60.00335 * 1 2 3 33 33 H 1.09006 * 109.47012 * 180.02562 * 1 2 3 34 34 H 1.07999 * 120.44160 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.75962 * 180.23758 * 7 6 5 36 36 H 1.08005 * 120.35498 * 179.70600 * 8 7 6 37 37 H 1.08006 * 119.58763 * 179.97438 * 9 8 7 38 38 H 0.97002 * 119.99646 * 354.73012 * 13 11 2 39 39 H 1.09000 * 109.47047 * 175.00279 * 16 14 13 40 40 H 1.09006 * 109.46799 * 295.00105 * 16 14 13 41 41 H 0.97001 * 119.99975 * 359.97438 * 17 16 14 42 42 H 0.97000 * 119.99972 * 179.97438 * 21 20 18 43 43 H 1.08997 * 110.01998 * 178.47812 * 26 14 13 44 44 H 1.08999 * 110.48568 * 335.79112 * 27 26 14 45 45 H 1.08998 * 110.48122 * 98.42992 * 27 26 14 46 46 H 1.09003 * 110.75336 * 279.62861 * 28 27 26 47 47 H 1.08999 * 110.75681 * 156.25816 * 28 27 26 48 48 H 1.09008 * 110.48602 * 203.38070 * 29 28 27 49 49 H 1.09000 * 110.60012 * 80.79881 * 29 28 27 50 50 H 1.08998 * 110.03530 * 238.56629 * 30 26 14 51 51 H 1.09000 * 110.03352 * 359.95316 * 30 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6798 -0.5141 -3.4380 7 6 2.8800 0.2677 -4.5619 8 6 2.6140 1.6277 -4.4784 9 6 2.1557 2.1544 -3.2876 10 7 1.9696 1.3823 -2.2336 11 6 2.0323 -0.7102 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7021 -0.2530 2.4546 14 6 2.0928 -1.0071 3.6483 15 1 2.7111 -1.8557 3.3557 16 6 0.8392 -1.5127 4.3652 17 7 0.0191 -2.2851 3.4287 18 6 -1.1597 -2.8410 3.8485 19 1 -1.4852 -2.7098 4.8699 20 6 -1.9371 -3.5725 2.9610 21 7 -1.5408 -3.7320 1.7161 22 14 -3.5456 -4.3303 3.5335 23 1 -4.4565 -3.2581 4.0087 24 1 -4.1808 -5.0556 2.4040 25 1 -3.2779 -5.2803 4.6431 26 6 2.8865 -0.0980 4.5888 27 6 2.0496 1.1459 4.9523 28 6 3.0845 2.2969 5.0084 29 6 4.0411 1.9535 3.8395 30 6 4.1527 0.4155 3.8813 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.8803 -1.5749 -3.4664 35 1 3.2394 -0.1693 -5.4819 36 1 2.7643 2.2669 -5.3359 37 1 1.9477 3.2119 -3.2172 38 1 1.2057 0.5755 2.5452 39 1 1.1303 -2.1473 5.2022 40 1 0.2651 -0.6633 4.7357 41 1 0.3112 -2.4027 2.5112 42 1 -2.0837 -4.2435 1.0960 43 1 3.1588 -0.6429 5.4927 44 1 1.3028 1.3414 4.1828 45 1 1.5726 1.0141 5.9235 46 1 3.6181 2.2906 5.9588 47 1 2.6011 3.2595 4.8419 48 1 5.0175 2.4113 3.9986 49 1 3.6182 2.2798 2.8894 50 1 5.0395 0.1206 4.4422 51 1 4.2022 0.0164 2.8682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724104671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:35 Heat of formation + Delta-G solvation = -55.084506 kcal Electronic energy + Delta-G solvation = -31832.181337 eV Core-core repulsion = 27730.945913 eV Total energy + Delta-G solvation = -4101.235423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.88417 -41.13268 -39.53133 -38.48751 -36.75567 -35.20252 -33.75813 -33.39199 -32.57264 -31.20348 -30.58783 -29.59721 -27.77117 -26.09440 -25.14160 -24.52186 -23.92337 -22.86618 -21.90435 -21.03379 -20.41581 -19.53976 -19.18941 -18.60559 -17.55103 -17.06831 -16.98945 -16.73647 -16.63046 -16.50513 -16.06235 -15.50231 -15.36996 -15.35947 -15.06532 -14.96762 -14.44692 -14.23960 -14.15093 -14.03966 -13.89449 -13.68090 -13.40130 -13.10744 -12.98689 -12.92305 -12.77042 -12.72321 -12.24240 -12.18617 -11.99699 -11.90934 -11.84100 -11.66395 -11.54327 -11.44753 -11.37192 -10.97834 -10.90338 -10.76952 -10.56753 -10.00688 -9.48025 -8.97259 -7.90533 -5.20763 0.21633 0.33668 1.41951 1.45318 1.48924 1.54966 1.68388 2.50315 2.56715 2.84344 3.28633 3.41629 3.52701 3.63374 3.72923 3.82662 3.87953 3.95350 4.05322 4.12488 4.16957 4.24435 4.26729 4.36629 4.38932 4.57112 4.61504 4.63175 4.66514 4.70049 4.78430 4.82141 4.87493 4.89362 4.90922 5.06609 5.07397 5.13939 5.14932 5.17816 5.29333 5.31192 5.38127 5.45229 5.50849 5.54565 5.55126 5.61627 6.21044 6.27835 6.50685 6.87551 7.20923 7.35039 8.11988 8.34948 9.31517 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007259 B = 0.004066 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3856.261234 B = 6885.139291 C = 9936.158903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 H 0.129 0.871 4 O -0.307 6.307 5 C 0.291 3.709 6 C -0.212 4.212 7 C -0.035 4.035 8 C -0.203 4.203 9 C 0.128 3.872 10 N -0.559 5.559 11 C 0.517 3.483 12 O -0.573 6.573 13 N -0.687 5.687 14 C 0.148 3.852 15 H 0.065 0.935 16 C 0.141 3.859 17 N -0.743 5.743 18 C -0.245 4.245 19 H 0.078 0.922 20 C -0.074 4.074 21 N -0.965 5.965 22 Si 0.972 3.028 23 H -0.274 1.274 24 H -0.300 1.300 25 H -0.280 1.280 26 C -0.090 4.090 27 C -0.118 4.118 28 C -0.114 4.114 29 C -0.118 4.118 30 C -0.117 4.117 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.136 0.864 35 H 0.174 0.826 36 H 0.176 0.824 37 H 0.191 0.809 38 H 0.410 0.590 39 H 0.027 0.973 40 H 0.043 0.957 41 H 0.372 0.628 42 H 0.247 0.753 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 19.956 -5.919 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 H 0.146 0.854 4 O -0.214 6.214 5 C 0.114 3.886 6 C -0.232 4.232 7 C -0.060 4.060 8 C -0.223 4.223 9 C -0.028 4.028 10 N -0.283 5.283 11 C 0.303 3.697 12 O -0.451 6.451 13 N -0.340 5.340 14 C 0.043 3.957 15 H 0.083 0.917 16 C 0.014 3.986 17 N -0.385 5.385 18 C -0.377 4.377 19 H 0.096 0.904 20 C -0.266 4.266 21 N -0.616 5.616 22 Si 0.801 3.199 23 H -0.200 1.200 24 H -0.226 1.226 25 H -0.207 1.207 26 C -0.110 4.110 27 C -0.155 4.155 28 C -0.152 4.152 29 C -0.156 4.156 30 C -0.155 4.155 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.154 0.846 35 H 0.191 0.809 36 H 0.193 0.807 37 H 0.208 0.792 38 H 0.247 0.753 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.204 0.796 42 H 0.056 0.944 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.087 0.913 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.401 19.267 -5.017 22.943 hybrid contribution -0.902 -1.304 -0.795 1.774 sum 10.498 17.963 -5.812 21.602 Atomic orbital electron populations 1.21994 0.91825 1.02500 1.04136 1.21981 0.95754 0.97586 0.81791 0.85376 1.86387 1.80275 1.36019 1.18691 1.20240 0.92971 0.88259 0.87142 1.21347 1.07043 1.02729 0.92106 1.21845 0.92961 0.93788 0.97447 1.22420 1.03183 0.96132 1.00544 1.23112 0.92078 1.00363 0.87216 1.67234 1.22457 1.04254 1.34349 1.20557 0.79430 0.84165 0.85527 1.90685 1.39517 1.27875 1.87061 1.45520 1.57358 1.26977 1.04139 1.21192 0.95371 0.94342 0.84775 0.91714 1.21246 0.90904 0.94255 0.92224 1.42527 1.22769 1.62406 1.10830 1.19595 0.97337 1.24926 0.95798 0.90389 1.25560 1.02620 1.02448 0.95969 1.69879 1.40277 1.46569 1.04868 0.85234 0.79877 0.78291 0.76452 1.19965 1.22607 1.20679 1.22053 0.94973 0.96486 0.97470 1.22435 0.97646 0.93668 1.01794 1.22458 0.96231 0.97977 0.98495 1.22317 1.00212 0.94116 0.98939 1.22120 0.97098 0.96846 0.99402 0.89102 0.90325 0.94280 0.84636 0.80881 0.80699 0.79192 0.75280 0.95472 0.93899 0.79613 0.94388 0.89036 0.91921 0.90582 0.90576 0.90382 0.90858 0.92270 0.91252 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.43 71.98 0.68 -4.46 16 2 C 0.09 3.09 2.91 29.85 0.09 3.18 16 3 H 0.13 3.77 6.98 -2.39 -0.02 3.75 16 4 O -0.31 -11.94 9.29 -70.94 -0.66 -12.60 16 5 C 0.29 9.16 7.45 84.79 0.63 9.79 16 6 C -0.21 -5.49 10.04 22.46 0.23 -5.26 16 7 C -0.04 -0.59 10.17 22.44 0.23 -0.36 16 8 C -0.20 -2.80 10.10 22.36 0.23 -2.58 16 9 C 0.13 2.25 11.17 84.62 0.95 3.20 16 10 N -0.56 -14.71 8.65 -308.94 -2.67 -17.38 16 11 C 0.52 20.53 6.34 87.66 0.56 21.08 16 12 O -0.57 -28.29 15.84 15.99 0.25 -28.04 16 13 N -0.69 -22.70 3.60 -442.52 -1.59 -24.30 16 14 C 0.15 5.09 2.04 45.00 0.09 5.18 16 15 H 0.06 2.72 6.91 -2.39 -0.02 2.70 16 16 C 0.14 5.63 5.84 86.38 0.50 6.13 16 17 N -0.74 -39.11 5.43 -343.43 -1.87 -40.98 16 18 C -0.24 -13.96 9.99 84.04 0.84 -13.12 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 20 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.97 -61.82 13.06 21.65 0.28 -61.54 16 22 Si 0.97 47.41 29.55 68.60 2.03 49.44 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 26 C -0.09 -2.23 2.82 -10.07 -0.03 -2.25 16 27 C -0.12 -2.36 5.12 31.67 0.16 -2.19 16 28 C -0.11 -1.81 6.91 31.88 0.22 -1.59 16 29 C -0.12 -2.17 6.83 31.67 0.22 -1.95 16 30 C -0.12 -2.76 6.19 31.32 0.19 -2.56 16 31 H 0.09 2.81 7.67 -2.39 -0.02 2.79 16 32 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.41 11.22 6.53 -92.71 -0.61 10.61 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 1.58 7.13 -2.38 -0.02 1.56 16 41 H 0.37 21.73 6.80 -92.71 -0.63 21.10 16 42 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.30 5.96 -2.39 -0.01 1.29 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.04 1.13 7.12 -2.39 -0.02 1.11 16 Total: -1.00 -80.95 410.51 1.72 -79.23 By element: Atomic # 1 Polarization: 48.11 SS G_CDS: -0.30 Total: 47.82 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 6.25 Total: 8.35 kcal Atomic # 7 Polarization: -138.34 SS G_CDS: -5.85 Total: -144.19 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -0.41 Total: -40.64 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -80.95 1.72 -79.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724104671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.141 kcal (2) G-P(sol) polarization free energy of solvation -80.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds