Wall clock time and date at job start Wed Apr 1 2020 05:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47386 * 2 1 4 4 O 1.42906 * 109.47428 * 239.99771 * 2 1 3 5 5 C 1.35917 * 116.99718 * 87.42595 * 4 2 1 6 6 C 1.39141 * 120.47085 * 354.52067 * 5 4 2 7 7 C 1.38542 * 118.37045 * 179.97438 * 6 5 4 8 8 C 1.38249 * 119.22086 * 0.02562 * 7 6 5 9 9 N 1.31848 * 120.88803 * 359.97438 * 8 7 6 10 10 C 1.31842 * 121.78265 * 359.70401 * 9 8 7 11 11 C 1.50705 * 109.47065 * 119.99941 * 2 1 3 12 12 O 1.21281 * 119.99911 * 115.00143 * 11 2 1 13 13 N 1.34774 * 119.99861 * 295.00065 * 11 2 1 14 14 C 1.46501 * 119.99725 * 179.97438 * 13 11 2 15 15 H 1.08996 * 109.46001 * 35.03140 * 14 13 11 16 16 C 1.53035 * 109.45162 * 275.06091 * 14 13 11 17 17 C 1.53620 * 109.24255 * 178.49858 * 16 14 13 18 18 N 1.46926 * 108.54482 * 54.85756 * 17 16 14 19 19 C 1.36937 * 120.63023 * 126.36729 * 18 17 16 20 20 H 1.07997 * 119.99788 * 330.16299 * 19 18 17 21 21 C 1.38811 * 119.99966 * 150.16062 * 19 18 17 22 22 N 1.31621 * 120.00087 * 331.56390 * 21 19 18 23 23 Si 1.86797 * 119.99890 * 151.55773 * 21 19 18 24 24 H 1.48497 * 109.47443 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46747 * 120.00282 * 23 21 19 26 26 H 1.48500 * 109.47165 * 240.00237 * 23 21 19 27 27 C 1.46922 * 118.73752 * 306.09390 * 18 17 16 28 28 C 1.53045 * 109.45614 * 155.00021 * 14 13 11 29 29 C 1.52996 * 109.49733 * 61.42272 * 28 14 13 30 30 C 1.52997 * 109.49707 * 301.32164 * 28 14 13 31 31 H 1.09005 * 109.47017 * 60.00240 * 1 2 3 32 32 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47110 * 299.99709 * 1 2 3 34 34 H 1.07997 * 120.81590 * 0.02562 * 6 5 4 35 35 H 1.07997 * 120.38790 * 180.02562 * 7 6 5 36 36 H 1.08002 * 119.55927 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.66515 * 180.29560 * 10 9 8 38 38 H 0.96995 * 120.00260 * 359.97438 * 13 11 2 39 39 H 1.08999 * 109.50113 * 298.57680 * 16 14 13 40 40 H 1.09004 * 109.49654 * 58.67157 * 16 14 13 41 41 H 1.09000 * 109.74054 * 295.11784 * 17 16 14 42 42 H 1.09003 * 109.66548 * 174.55600 * 17 16 14 43 43 H 0.96999 * 120.00049 * 354.20971 * 22 21 19 44 44 H 1.09003 * 109.58706 * 173.64674 * 27 18 17 45 45 H 1.08995 * 109.58860 * 294.07418 * 27 18 17 46 46 H 1.08995 * 109.47113 * 179.83534 * 29 28 14 47 47 H 1.09000 * 109.47427 * 299.83574 * 29 28 14 48 48 H 1.09005 * 109.47003 * 59.83349 * 29 28 14 49 49 H 1.08990 * 109.47815 * 300.16144 * 30 28 14 50 50 H 1.09007 * 109.46770 * 60.16660 * 30 28 14 51 51 H 1.09007 * 109.46742 * 180.16199 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.1608 0.0741 -2.2912 6 6 1.7556 1.4050 -2.3146 7 6 1.9339 2.1269 -3.4835 8 6 2.5036 1.5064 -4.5798 9 7 2.8768 0.2431 -4.5244 10 6 2.7303 -0.4769 -3.4296 11 6 2.0323 -0.7104 1.2305 12 8 2.6530 -1.7467 1.1215 13 7 1.7919 -0.1942 2.4520 14 6 2.2797 -0.8851 3.6482 15 1 3.2400 -1.3528 3.4311 16 6 1.2716 -1.9591 4.0632 17 6 1.8054 -2.7055 5.2952 18 7 2.1044 -1.7215 6.3445 19 6 1.5699 -1.8544 7.5982 20 1 0.6107 -2.3333 7.7283 21 6 2.2610 -1.3735 8.7018 22 7 3.5756 -1.3129 8.6800 23 14 1.3252 -0.8122 10.2180 24 1 -0.1325 -0.9811 9.9907 25 1 1.7414 -1.6282 11.3868 26 1 1.6229 0.6186 10.4819 27 6 2.9925 -0.5957 6.0248 28 6 2.4498 0.1242 4.7861 29 6 1.0958 0.7560 5.1149 30 6 3.4330 1.2155 4.3580 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 1.3136 1.8642 -1.4428 35 1 1.6315 3.1623 -3.5377 36 1 2.6448 2.0640 -5.4939 37 1 3.0525 -1.5076 -3.4207 38 1 1.2958 0.6348 2.5392 39 1 0.3180 -1.4894 4.3042 40 1 1.1334 -2.6643 3.2436 41 1 2.7141 -3.2471 5.0324 42 1 1.0515 -3.4058 5.6549 43 1 4.0657 -1.6812 7.9283 44 1 3.0221 0.0967 6.8661 45 1 3.9961 -0.9686 5.8202 46 1 1.2169 1.4725 5.9273 47 1 0.7101 1.2680 4.2334 48 1 0.3957 -0.0224 5.4184 49 1 4.3968 0.7643 4.1226 50 1 3.0464 1.7273 3.4766 51 1 3.5560 1.9324 5.1698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724980576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:51 Heat of formation + Delta-G solvation = -18.847568 kcal Electronic energy + Delta-G solvation = -31573.680080 eV Core-core repulsion = 27474.016008 eV Total energy + Delta-G solvation = -4099.664072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.21570 -40.21359 -38.90165 -37.77748 -34.87784 -33.37954 -32.63329 -32.47332 -31.88259 -30.37789 -29.22646 -26.95533 -26.20366 -25.59231 -24.71682 -23.98159 -23.18654 -22.10818 -20.78947 -20.29022 -18.85075 -18.64817 -17.63465 -17.17476 -17.09977 -16.42300 -16.02783 -15.81386 -15.00728 -14.82944 -14.64171 -14.41554 -14.13760 -13.98467 -13.82003 -13.68904 -13.61835 -13.35366 -13.33033 -12.84817 -12.71143 -12.56685 -12.49525 -11.97882 -11.96514 -11.63975 -11.62285 -11.55337 -10.99830 -10.98914 -10.70911 -10.50362 -10.41911 -10.22203 -10.15039 -10.10654 -9.96761 -9.89815 -9.75928 -9.34488 -8.86887 -8.79489 -8.35060 -6.91782 -6.12577 -3.27172 0.74466 0.84283 2.30195 2.49045 3.34821 3.42101 3.48067 3.49461 3.63693 4.09096 4.18608 4.34364 4.35092 4.43742 4.52352 4.55410 4.69870 4.82271 4.98273 5.07076 5.08394 5.14863 5.26608 5.34662 5.35713 5.46105 5.58099 5.65003 5.65735 5.69466 5.74704 5.87599 5.90782 6.00204 6.02691 6.11623 6.23140 6.27060 6.32480 6.44698 6.49891 6.68253 6.71121 6.75086 6.80730 6.83617 7.00549 7.07559 7.47343 7.59137 8.01300 8.15062 8.53923 9.07352 9.80260 10.26391 11.15460 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.002205 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.486964 B =12693.433943 C =12891.753100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 H 0.096 0.904 4 O -0.276 6.276 5 C 0.085 3.915 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.054 3.946 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.514 3.486 12 O -0.516 6.516 13 N -0.714 5.714 14 C 0.166 3.834 15 H 0.082 0.918 16 C -0.143 4.143 17 C 0.148 3.852 18 N -0.594 5.594 19 C -0.352 4.352 20 H 0.055 0.945 21 C -0.020 4.020 22 N -0.909 5.909 23 Si 1.062 2.938 24 H -0.292 1.292 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.168 3.832 28 C -0.091 4.091 29 C -0.128 4.128 30 C -0.137 4.137 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.396 0.604 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.058 0.942 43 H 0.269 0.731 44 H 0.081 0.919 45 H 0.018 0.982 46 H 0.054 0.946 47 H 0.031 0.969 48 H 0.073 0.927 49 H 0.051 0.949 50 H 0.044 0.956 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 10.098 -21.257 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.004 3.996 3 H 0.114 0.886 4 O -0.186 6.186 5 C 0.036 3.964 6 C -0.198 4.198 7 C -0.150 4.150 8 C -0.103 4.103 9 N -0.156 5.156 10 C -0.082 4.082 11 C 0.297 3.703 12 O -0.390 6.390 13 N -0.367 5.367 14 C 0.062 3.938 15 H 0.100 0.900 16 C -0.183 4.183 17 C 0.021 3.979 18 N -0.317 5.317 19 C -0.481 4.481 20 H 0.073 0.927 21 C -0.223 4.223 22 N -0.548 5.548 23 Si 0.892 3.108 24 H -0.218 1.218 25 H -0.222 1.222 26 H -0.217 1.217 27 C 0.041 3.959 28 C -0.093 4.093 29 C -0.185 4.185 30 C -0.195 4.195 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.231 0.769 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.200 9.404 -20.490 23.137 hybrid contribution -0.907 0.383 -0.679 1.196 sum -6.107 9.787 -21.169 24.108 Atomic orbital electron populations 1.22306 0.92312 1.04795 1.03747 1.22330 0.95957 0.97018 0.84340 0.88605 1.86271 1.80616 1.35500 1.16252 1.20290 0.96379 0.91055 0.88639 1.21788 1.03856 0.93811 1.00296 1.22008 0.98701 1.01170 0.93090 1.22694 0.97622 0.91152 0.98825 1.67759 1.14992 1.07323 1.25486 1.22292 0.98434 1.01095 0.86372 1.19940 0.80486 0.85796 0.84044 1.90760 1.39219 1.22780 1.86253 1.46209 1.57532 1.27589 1.05396 1.21025 0.97943 0.92659 0.82130 0.89993 1.22513 0.99010 0.97703 0.99043 1.20974 0.97499 0.91415 0.88001 1.44130 1.56670 1.22471 1.08463 1.19917 1.01555 1.42955 0.83627 0.92724 1.25806 0.96186 1.00277 1.00034 1.70724 1.06201 1.45482 1.32395 0.83585 0.74612 0.76845 0.75714 1.21787 1.22155 1.21680 1.20945 0.91499 0.89877 0.93540 1.21438 0.96527 0.94866 0.96514 1.21758 0.96764 1.00708 0.99316 1.21801 0.98945 0.98335 1.00385 0.90867 0.90310 0.89965 0.84127 0.84405 0.82473 0.81715 0.76883 0.91627 0.92642 0.96376 0.92324 0.92011 0.90064 0.96401 0.92686 0.95018 0.90825 0.92960 0.93658 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.21 37.16 0.34 -0.96 16 2 C 0.06 0.63 2.63 -27.88 -0.07 0.56 16 3 H 0.10 0.71 6.19 -51.93 -0.32 0.39 16 4 O -0.28 -3.33 9.34 -39.34 -0.37 -3.70 16 5 C 0.08 0.88 6.64 -39.07 -0.26 0.62 16 6 C -0.17 -1.34 8.46 -39.13 -0.33 -1.68 16 7 C -0.13 -0.88 10.11 -39.47 -0.40 -1.28 16 8 C 0.05 0.43 11.18 -17.54 -0.20 0.23 16 9 N -0.45 -4.70 10.36 -13.13 -0.14 -4.84 16 10 C 0.08 0.82 11.14 -17.37 -0.19 0.62 16 11 C 0.51 7.01 7.14 -10.98 -0.08 6.93 16 12 O -0.52 -9.48 16.17 -14.30 -0.23 -9.72 16 13 N -0.71 -8.93 4.25 -53.76 -0.23 -9.16 16 14 C 0.17 2.66 1.57 -67.89 -0.11 2.55 16 15 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 16 C -0.14 -2.46 5.32 -26.39 -0.14 -2.60 16 17 C 0.15 3.07 6.54 -3.49 -0.02 3.05 16 18 N -0.59 -13.98 2.25 -172.06 -0.39 -14.36 16 19 C -0.35 -9.32 9.42 -15.06 -0.14 -9.47 16 20 H 0.05 1.48 7.97 -52.49 -0.42 1.06 16 21 C -0.02 -0.54 4.56 -17.43 -0.08 -0.62 16 22 N -0.91 -26.36 12.56 55.49 0.70 -25.66 16 23 Si 1.06 24.48 30.00 -169.99 -5.10 19.38 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 27 C 0.17 3.64 3.50 -3.71 -0.01 3.63 16 28 C -0.09 -1.49 0.56 -154.39 -0.09 -1.58 16 29 C -0.13 -1.97 7.83 37.16 0.29 -1.68 16 30 C -0.14 -1.94 8.31 37.16 0.31 -1.63 16 31 H 0.07 0.45 7.22 -51.93 -0.38 0.07 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.48 7.92 -51.93 -0.41 0.07 16 34 H 0.14 0.79 5.70 -52.49 -0.30 0.49 16 35 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.40 3.85 6.45 -40.82 -0.26 3.59 16 39 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 43 H 0.27 7.94 7.15 -40.82 -0.29 7.65 16 44 H 0.08 1.98 6.55 -51.93 -0.34 1.64 16 45 H 0.02 0.41 7.96 -51.93 -0.41 0.00 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 48 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.04 0.53 7.37 -51.93 -0.38 0.14 16 51 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -32.67 398.27 -8.83 -41.51 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.90 Total: 3.86 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.18 Total: -3.31 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.05 Total: -54.02 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.60 Total: -13.42 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.10 Total: 19.38 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.67 -8.83 -41.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724980576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.660 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds