Wall clock time and date at job start Wed Apr 1 2020 05:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47386 * 2 1 4 4 O 1.42906 * 109.47428 * 239.99771 * 2 1 3 5 5 C 1.35917 * 116.99718 * 87.42595 * 4 2 1 6 6 C 1.39141 * 120.47085 * 354.52067 * 5 4 2 7 7 C 1.38542 * 118.37045 * 179.97438 * 6 5 4 8 8 C 1.38249 * 119.22086 * 0.02562 * 7 6 5 9 9 N 1.31848 * 120.88803 * 359.97438 * 8 7 6 10 10 C 1.31842 * 121.78265 * 359.70401 * 9 8 7 11 11 C 1.50705 * 109.47065 * 119.99941 * 2 1 3 12 12 O 1.21281 * 119.99911 * 115.00143 * 11 2 1 13 13 N 1.34774 * 119.99861 * 295.00065 * 11 2 1 14 14 C 1.46501 * 119.99725 * 179.97438 * 13 11 2 15 15 H 1.08996 * 109.46001 * 35.03140 * 14 13 11 16 16 C 1.53035 * 109.45162 * 275.06091 * 14 13 11 17 17 C 1.53620 * 109.24255 * 178.49858 * 16 14 13 18 18 N 1.46926 * 108.54482 * 54.85756 * 17 16 14 19 19 C 1.36937 * 120.63023 * 126.36729 * 18 17 16 20 20 H 1.07997 * 119.99788 * 330.16299 * 19 18 17 21 21 C 1.38811 * 119.99966 * 150.16062 * 19 18 17 22 22 N 1.31621 * 120.00087 * 331.56390 * 21 19 18 23 23 Si 1.86797 * 119.99890 * 151.55773 * 21 19 18 24 24 H 1.48497 * 109.47443 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46747 * 120.00282 * 23 21 19 26 26 H 1.48500 * 109.47165 * 240.00237 * 23 21 19 27 27 C 1.46922 * 118.73752 * 306.09390 * 18 17 16 28 28 C 1.53045 * 109.45614 * 155.00021 * 14 13 11 29 29 C 1.52996 * 109.49733 * 61.42272 * 28 14 13 30 30 C 1.52997 * 109.49707 * 301.32164 * 28 14 13 31 31 H 1.09005 * 109.47017 * 60.00240 * 1 2 3 32 32 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47110 * 299.99709 * 1 2 3 34 34 H 1.07997 * 120.81590 * 0.02562 * 6 5 4 35 35 H 1.07997 * 120.38790 * 180.02562 * 7 6 5 36 36 H 1.08002 * 119.55927 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.66515 * 180.29560 * 10 9 8 38 38 H 0.96995 * 120.00260 * 359.97438 * 13 11 2 39 39 H 1.08999 * 109.50113 * 298.57680 * 16 14 13 40 40 H 1.09004 * 109.49654 * 58.67157 * 16 14 13 41 41 H 1.09000 * 109.74054 * 295.11784 * 17 16 14 42 42 H 1.09003 * 109.66548 * 174.55600 * 17 16 14 43 43 H 0.96999 * 120.00049 * 354.20971 * 22 21 19 44 44 H 1.09003 * 109.58706 * 173.64674 * 27 18 17 45 45 H 1.08995 * 109.58860 * 294.07418 * 27 18 17 46 46 H 1.08995 * 109.47113 * 179.83534 * 29 28 14 47 47 H 1.09000 * 109.47427 * 299.83574 * 29 28 14 48 48 H 1.09005 * 109.47003 * 59.83349 * 29 28 14 49 49 H 1.08990 * 109.47815 * 300.16144 * 30 28 14 50 50 H 1.09007 * 109.46770 * 60.16660 * 30 28 14 51 51 H 1.09007 * 109.46742 * 180.16199 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.1608 0.0741 -2.2912 6 6 1.7556 1.4050 -2.3146 7 6 1.9339 2.1269 -3.4835 8 6 2.5036 1.5064 -4.5798 9 7 2.8768 0.2431 -4.5244 10 6 2.7303 -0.4769 -3.4296 11 6 2.0323 -0.7104 1.2305 12 8 2.6530 -1.7467 1.1215 13 7 1.7919 -0.1942 2.4520 14 6 2.2797 -0.8851 3.6482 15 1 3.2400 -1.3528 3.4311 16 6 1.2716 -1.9591 4.0632 17 6 1.8054 -2.7055 5.2952 18 7 2.1044 -1.7215 6.3445 19 6 1.5699 -1.8544 7.5982 20 1 0.6107 -2.3333 7.7283 21 6 2.2610 -1.3735 8.7018 22 7 3.5756 -1.3129 8.6800 23 14 1.3252 -0.8122 10.2180 24 1 -0.1325 -0.9811 9.9907 25 1 1.7414 -1.6282 11.3868 26 1 1.6229 0.6186 10.4819 27 6 2.9925 -0.5957 6.0248 28 6 2.4498 0.1242 4.7861 29 6 1.0958 0.7560 5.1149 30 6 3.4330 1.2155 4.3580 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 1.3136 1.8642 -1.4428 35 1 1.6315 3.1623 -3.5377 36 1 2.6448 2.0640 -5.4939 37 1 3.0525 -1.5076 -3.4207 38 1 1.2958 0.6348 2.5392 39 1 0.3180 -1.4894 4.3042 40 1 1.1334 -2.6643 3.2436 41 1 2.7141 -3.2471 5.0324 42 1 1.0515 -3.4058 5.6549 43 1 4.0657 -1.6812 7.9283 44 1 3.0221 0.0967 6.8661 45 1 3.9961 -0.9686 5.8202 46 1 1.2169 1.4725 5.9273 47 1 0.7101 1.2680 4.2334 48 1 0.3957 -0.0224 5.4184 49 1 4.3968 0.7643 4.1226 50 1 3.0464 1.7273 3.4766 51 1 3.5560 1.9324 5.1698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724980576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:50 Heat of formation + Delta-G solvation = -39.022169 kcal Electronic energy + Delta-G solvation = -31574.554916 eV Core-core repulsion = 27474.016008 eV Total energy + Delta-G solvation = -4100.538908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.02033 -41.30242 -40.00447 -38.84576 -36.51829 -34.63560 -33.97314 -33.24925 -33.03539 -31.19506 -30.71959 -28.21612 -27.75231 -26.94769 -25.74901 -24.78059 -24.21635 -23.38036 -22.45322 -21.40283 -19.90393 -19.53855 -19.42392 -18.41430 -17.75182 -17.34435 -16.99602 -16.81891 -16.31815 -16.09388 -15.86810 -15.47112 -15.39806 -15.25871 -15.15932 -14.98989 -14.75108 -14.47465 -14.23868 -14.02007 -13.94139 -13.62602 -13.34488 -13.13794 -13.00745 -12.91449 -12.68564 -12.65938 -12.55079 -12.47076 -12.28821 -12.16644 -11.87294 -11.80529 -11.72964 -11.42145 -11.19655 -10.94114 -10.71948 -10.58235 -10.42687 -10.12061 -9.48181 -8.93011 -8.25467 -5.39215 0.13875 0.23032 1.43393 1.45600 1.59924 1.66274 1.83181 2.43751 2.65719 2.79350 3.18983 3.37984 3.50518 3.56965 3.59945 3.63428 3.75451 3.78556 3.88057 3.91236 3.97707 4.14487 4.22955 4.30558 4.32252 4.46113 4.52330 4.59091 4.62316 4.71411 4.75189 4.77053 4.82344 4.88063 4.95037 5.01284 5.01882 5.07332 5.10516 5.12310 5.12425 5.20173 5.28208 5.36025 5.41070 5.46038 5.64086 5.89383 6.12768 6.37828 6.46576 6.96358 7.04780 7.12752 7.77622 8.23518 8.98256 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.002205 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.486964 B =12693.433943 C =12891.753100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 H 0.131 0.869 4 O -0.306 6.306 5 C 0.067 3.933 6 C -0.166 4.166 7 C -0.119 4.119 8 C 0.046 3.954 9 N -0.475 5.475 10 C 0.050 3.950 11 C 0.512 3.488 12 O -0.571 6.571 13 N -0.696 5.696 14 C 0.178 3.822 15 H 0.051 0.949 16 C -0.126 4.126 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.350 4.350 20 H 0.049 0.951 21 C -0.071 4.071 22 N -0.937 5.937 23 Si 1.113 2.887 24 H -0.272 1.272 25 H -0.297 1.297 26 H -0.284 1.284 27 C 0.175 3.825 28 C -0.080 4.080 29 C -0.123 4.123 30 C -0.133 4.133 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.155 0.845 38 H 0.416 0.584 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.001 0.999 42 H 0.053 0.947 43 H 0.251 0.749 44 H 0.051 0.949 45 H -0.010 1.010 46 H 0.047 0.953 47 H 0.080 0.920 48 H 0.050 0.950 49 H 0.039 0.961 50 H 0.083 0.917 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 13.935 -22.869 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 H 0.148 0.852 4 O -0.218 6.218 5 C 0.020 3.980 6 C -0.192 4.192 7 C -0.139 4.139 8 C -0.111 4.111 9 N -0.184 5.184 10 C -0.108 4.108 11 C 0.298 3.702 12 O -0.449 6.449 13 N -0.350 5.350 14 C 0.073 3.927 15 H 0.069 0.931 16 C -0.166 4.166 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.480 4.480 20 H 0.066 0.934 21 C -0.268 4.268 22 N -0.578 5.578 23 Si 0.938 3.062 24 H -0.196 1.196 25 H -0.224 1.224 26 H -0.211 1.211 27 C 0.049 3.951 28 C -0.082 4.082 29 C -0.180 4.180 30 C -0.190 4.190 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.188 0.812 35 H 0.194 0.806 36 H 0.201 0.799 37 H 0.172 0.828 38 H 0.255 0.745 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.019 0.981 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.008 0.992 46 H 0.066 0.934 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.102 0.898 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.827 13.264 -22.138 26.968 hybrid contribution -0.060 -0.862 -0.275 0.907 sum -7.887 12.402 -22.413 26.802 Atomic orbital electron populations 1.22343 0.90067 1.04296 1.05988 1.22421 0.97366 0.97453 0.81811 0.85162 1.86228 1.81380 1.37026 1.17212 1.20352 0.97528 0.92260 0.87894 1.22144 1.02846 0.92501 1.01735 1.22432 0.96891 1.02665 0.91869 1.23283 0.96842 0.90452 1.00516 1.67738 1.16160 1.08828 1.25685 1.22258 0.99945 1.01257 0.87324 1.20714 0.79177 0.85123 0.85186 1.90748 1.41667 1.25445 1.87056 1.45850 1.57248 1.27873 1.04032 1.20568 0.96313 0.92385 0.83435 0.93072 1.22296 0.99575 0.97802 0.96965 1.21049 0.96731 0.91446 0.89030 1.44322 1.56706 1.23813 1.08238 1.20121 1.00964 1.41947 0.84942 0.93356 1.27124 0.96170 1.00612 1.02879 1.70861 1.07191 1.47650 1.32059 0.82907 0.74485 0.76461 0.72379 1.19647 1.22387 1.21061 1.20806 0.90272 0.89032 0.95034 1.21222 0.97977 0.95088 0.93921 1.21705 0.95036 1.00014 1.01269 1.21777 0.97835 0.97473 1.01948 0.88810 0.92268 0.87450 0.81228 0.80557 0.79938 0.82779 0.74514 0.90274 0.92530 0.98128 0.92806 0.93984 0.93008 0.99227 0.93393 0.90164 0.93061 0.94141 0.89844 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.21 71.98 0.66 -1.20 16 2 C 0.07 1.15 2.63 29.85 0.08 1.23 16 3 H 0.13 1.26 6.19 -2.39 -0.01 1.24 16 4 O -0.31 -7.12 9.34 -73.62 -0.69 -7.81 16 5 C 0.07 1.30 6.64 22.60 0.15 1.45 16 6 C -0.17 -1.95 8.46 22.56 0.19 -1.76 16 7 C -0.12 -1.10 10.11 22.35 0.23 -0.87 16 8 C 0.05 0.62 11.18 84.69 0.95 1.56 16 9 N -0.47 -9.71 10.36 -195.45 -2.02 -11.74 16 10 C 0.05 1.07 11.14 84.80 0.94 2.02 16 11 C 0.51 13.09 7.14 87.66 0.63 13.71 16 12 O -0.57 -21.30 16.17 15.96 0.26 -21.04 16 13 N -0.70 -15.44 4.25 -442.40 -1.88 -17.32 16 14 C 0.18 5.59 1.57 45.02 0.07 5.66 16 15 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 16 C -0.13 -4.33 5.32 30.81 0.16 -4.17 16 17 C 0.14 6.20 6.54 86.51 0.57 6.76 16 18 N -0.61 -29.57 2.25 -698.27 -1.57 -31.14 16 19 C -0.35 -19.00 9.42 84.03 0.79 -18.21 16 20 H 0.05 2.65 7.97 -2.91 -0.02 2.63 16 21 C -0.07 -3.93 4.56 84.86 0.39 -3.54 16 22 N -0.94 -56.40 12.56 21.65 0.27 -56.13 16 23 Si 1.11 49.71 30.00 68.60 2.06 51.77 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 27 C 0.17 7.87 3.50 86.37 0.30 8.18 16 28 C -0.08 -2.55 0.56 -52.10 -0.03 -2.58 16 29 C -0.12 -3.45 7.83 71.98 0.56 -2.88 16 30 C -0.13 -3.49 8.31 71.98 0.60 -2.90 16 31 H 0.09 0.69 7.22 -2.38 -0.02 0.67 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 0.64 7.92 -2.39 -0.02 0.62 16 34 H 0.17 0.89 5.70 -2.91 -0.02 0.88 16 35 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 36 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.42 5.92 6.45 -92.71 -0.60 5.33 16 39 H 0.08 2.53 6.33 -2.39 -0.02 2.51 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.00 0.03 8.14 -2.39 -0.02 0.02 16 42 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 43 H 0.25 15.66 7.15 -92.71 -0.66 14.99 16 44 H 0.05 2.62 6.55 -2.39 -0.02 2.61 16 45 H -0.01 -0.51 7.96 -2.39 -0.02 -0.53 16 46 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.46 6.58 -2.39 -0.02 1.44 16 48 H 0.05 1.69 5.97 -2.38 -0.01 1.68 16 49 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.08 1.57 7.37 -2.38 -0.02 1.55 16 51 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -78.10 398.27 4.12 -73.99 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.45 Total: 16.97 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 7.24 Total: 2.45 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -5.20 Total: -116.33 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.43 Total: -28.85 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.06 Total: 51.77 kcal Total: -78.10 4.12 -73.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724980576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.963 kcal (2) G-P(sol) polarization free energy of solvation -78.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds