Wall clock time and date at job start Wed Apr 1 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47008 * 2 1 4 4 O 1.42904 * 109.46674 * 119.99764 * 2 1 3 5 5 C 1.35911 * 116.99832 * 273.42924 * 4 2 1 6 6 C 1.39133 * 120.47530 * 5.52670 * 5 4 2 7 7 C 1.38535 * 118.37663 * 179.70164 * 6 5 4 8 8 C 1.38252 * 119.21956 * 0.28257 * 7 6 5 9 9 N 1.31854 * 120.88834 * 359.97438 * 8 7 6 10 10 C 1.31844 * 121.77713 * 0.02562 * 9 8 7 11 11 C 1.50707 * 109.47168 * 239.99603 * 2 1 3 12 12 O 1.21275 * 119.99836 * 245.00177 * 11 2 1 13 13 N 1.34771 * 119.99752 * 65.00036 * 11 2 1 14 14 C 1.46499 * 119.99850 * 179.97438 * 13 11 2 15 15 H 1.09002 * 109.45575 * 324.99910 * 14 13 11 16 16 C 1.53034 * 109.46056 * 84.97234 * 14 13 11 17 17 C 1.53194 * 109.31057 * 181.38623 * 16 14 13 18 18 N 1.46921 * 108.77878 * 305.36264 * 17 16 14 19 19 C 1.36934 * 120.63494 * 233.58853 * 18 17 16 20 20 H 1.08006 * 120.00023 * 152.05082 * 19 18 17 21 21 C 1.38808 * 120.00228 * 332.05039 * 19 18 17 22 22 N 1.31625 * 119.99698 * 343.45316 * 21 19 18 23 23 Si 1.86802 * 120.00268 * 163.44750 * 21 19 18 24 24 H 1.48505 * 109.46814 * 60.00117 * 23 21 19 25 25 H 1.48493 * 109.47182 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47164 * 300.00438 * 23 21 19 27 27 C 1.46935 * 118.73374 * 53.61227 * 18 17 16 28 28 C 1.53044 * 109.46200 * 205.03086 * 14 13 11 29 29 C 1.53003 * 109.49560 * 298.56560 * 28 14 13 30 30 C 1.53007 * 109.49675 * 58.65839 * 28 14 13 31 31 H 1.09001 * 109.46700 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47245 * 300.00415 * 1 2 3 33 33 H 1.09006 * 109.46617 * 60.00653 * 1 2 3 34 34 H 1.08004 * 120.81000 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.39204 * 180.25352 * 7 6 5 36 36 H 1.08001 * 119.55985 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.65408 * 180.02562 * 10 9 8 38 38 H 0.97004 * 120.00109 * 0.02562 * 13 11 2 39 39 H 1.08993 * 109.50178 * 301.33699 * 16 14 13 40 40 H 1.08997 * 109.49565 * 61.43845 * 16 14 13 41 41 H 1.09000 * 109.59035 * 65.15554 * 17 16 14 42 42 H 1.09006 * 109.58284 * 185.43723 * 17 16 14 43 43 H 0.96996 * 119.99494 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.58793 * 66.18015 * 27 18 17 45 45 H 1.09002 * 109.58157 * 186.46362 * 27 18 17 46 46 H 1.09000 * 109.47105 * 59.99964 * 29 28 14 47 47 H 1.08995 * 109.47138 * 179.97438 * 29 28 14 48 48 H 1.08996 * 109.46803 * 299.99800 * 29 28 14 49 49 H 1.09000 * 109.46605 * 60.00337 * 30 28 14 50 50 H 1.09000 * 109.46495 * 180.02562 * 30 28 14 51 51 H 1.08995 * 109.46888 * 300.00329 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1436 0.0704 2.2959 6 6 1.7213 1.3958 2.3234 7 6 1.8763 2.1120 3.4990 8 6 2.4464 1.4933 4.5960 9 7 2.8410 0.2366 4.5353 10 6 2.7114 -0.4794 3.4358 11 6 2.0324 -0.7105 -1.2305 12 8 2.6530 -1.7467 -1.1214 13 7 1.7920 -0.1943 -2.4520 14 6 2.2808 -0.8847 -3.6481 15 1 3.2412 -1.3522 -3.4305 16 6 1.2734 -1.9590 -4.0642 17 6 1.8041 -2.7018 -5.2944 18 7 2.1081 -1.7205 -6.3447 19 6 1.5748 -1.8531 -7.5990 20 1 1.4067 -0.9782 -8.2096 21 6 1.2501 -3.1119 -8.0856 22 7 1.7388 -4.1877 -7.5058 23 14 0.1197 -3.2790 -9.5634 24 1 0.7252 -2.5884 -10.7304 25 1 -0.0692 -4.7170 -9.8819 26 1 -1.1958 -2.6644 -9.2523 27 6 2.9956 -0.5943 -6.0238 28 6 2.4513 0.1248 -4.7856 29 6 1.0971 0.7561 -5.1153 30 6 3.4335 1.2167 -4.3565 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.2792 1.8537 1.4507 35 1 1.5560 3.1417 3.5577 36 1 2.5703 2.0466 5.5152 37 1 3.0460 -1.5062 3.4243 38 1 1.2959 0.6347 -2.5391 39 1 1.1347 -2.6645 -3.2450 40 1 0.3200 -1.4895 -4.3060 41 1 2.7105 -3.2463 -5.0297 42 1 1.0489 -3.4015 -5.6526 43 1 1.5116 -5.0673 -7.8456 44 1 3.9991 -0.9669 -5.8186 45 1 3.0276 0.0971 -6.8659 46 1 0.7091 1.2652 -4.2331 47 1 1.2191 1.4753 -5.9252 48 1 0.3986 -0.0223 -5.4223 49 1 4.3982 0.7662 -4.1232 50 1 3.5542 1.9356 -5.1668 51 1 3.0473 1.7261 -3.4737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724980593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:55 Heat of formation + Delta-G solvation = -14.317050 kcal Electronic energy + Delta-G solvation = -31495.872437 eV Core-core repulsion = 27396.404823 eV Total energy + Delta-G solvation = -4099.467614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.17031 -40.13811 -38.83227 -37.69201 -34.70883 -33.42610 -32.60666 -32.33849 -31.34596 -30.39687 -29.70295 -26.98724 -25.97425 -25.61192 -24.75645 -23.96838 -23.17192 -22.06914 -20.74961 -20.21716 -18.80053 -18.57164 -17.41333 -17.06855 -16.75990 -16.33276 -15.97488 -15.71319 -15.00972 -14.80341 -14.64348 -14.32640 -14.12471 -14.01017 -13.91311 -13.64627 -13.56559 -13.29381 -13.05839 -12.86692 -12.65368 -12.51454 -12.32202 -11.92909 -11.83283 -11.60953 -11.50842 -11.37248 -11.06117 -10.92735 -10.71245 -10.63366 -10.45178 -10.21487 -10.18529 -10.01860 -9.93356 -9.81800 -9.73256 -9.45985 -8.78183 -8.75165 -8.44017 -6.70022 -5.80485 -3.23839 0.77535 0.87676 2.35990 2.57619 3.35896 3.41907 3.42670 3.43144 3.45520 4.12999 4.22526 4.38060 4.39542 4.46536 4.50035 4.57922 4.73096 4.85651 5.00741 5.12964 5.19162 5.20281 5.27050 5.38195 5.39960 5.53969 5.62530 5.68437 5.70819 5.75865 5.82255 5.87630 6.03326 6.05027 6.08533 6.20977 6.25904 6.35317 6.44386 6.50122 6.62725 6.74390 6.76190 6.82750 6.90537 6.94505 7.34422 7.55036 7.62338 7.66609 7.77099 8.24099 8.42438 9.18555 9.81717 10.38269 11.27822 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002237 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.747280 B =12512.075098 C =12874.957977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 H 0.095 0.905 4 O -0.275 6.275 5 C 0.086 3.914 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.053 3.947 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.513 3.487 12 O -0.513 6.513 13 N -0.715 5.715 14 C 0.165 3.835 15 H 0.082 0.918 16 C -0.150 4.150 17 C 0.173 3.827 18 N -0.588 5.588 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.159 3.841 28 C -0.089 4.089 29 C -0.131 4.131 30 C -0.137 4.137 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.394 0.606 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.091 0.909 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.033 0.967 47 H 0.050 0.950 48 H 0.076 0.924 49 H 0.052 0.948 50 H 0.055 0.945 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 15.732 18.588 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.004 3.996 3 H 0.113 0.887 4 O -0.186 6.186 5 C 0.037 3.963 6 C -0.198 4.198 7 C -0.150 4.150 8 C -0.104 4.104 9 N -0.156 5.156 10 C -0.082 4.082 11 C 0.297 3.703 12 O -0.388 6.388 13 N -0.368 5.368 14 C 0.062 3.938 15 H 0.100 0.900 16 C -0.190 4.190 17 C 0.047 3.953 18 N -0.310 5.310 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.032 3.968 28 C -0.091 4.091 29 C -0.188 4.188 30 C -0.195 4.195 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.229 0.771 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.109 0.891 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.578 14.171 19.279 23.979 hybrid contribution -1.322 0.954 -1.589 2.277 sum -2.901 15.126 17.690 23.455 Atomic orbital electron populations 1.22317 0.92373 1.04872 1.03674 1.22334 0.95940 0.96940 0.84396 0.88712 1.86277 1.80594 1.35775 1.15937 1.20290 0.96311 0.91092 0.88592 1.21786 1.03816 0.93941 1.00239 1.21999 0.98817 1.01136 0.93053 1.22688 0.97584 0.91263 0.98838 1.67763 1.14964 1.07366 1.25472 1.22300 0.98520 1.01091 0.86303 1.19903 0.80600 0.85828 0.84013 1.90770 1.39152 1.22641 1.86203 1.46231 1.57514 1.27563 1.05495 1.21066 0.98395 0.92574 0.81751 0.89961 1.22639 0.98615 0.97580 1.00176 1.20764 0.99079 0.90827 0.84640 1.44040 1.52496 1.25983 1.08475 1.19093 1.35356 0.91714 0.92101 0.91714 1.25059 1.00452 0.95956 0.98118 1.70018 1.44514 0.97340 1.42613 0.86384 0.81104 0.76673 0.82660 1.20921 1.21671 1.21084 1.20910 0.92355 0.90447 0.93118 1.21368 0.96262 0.94798 0.96684 1.21793 0.97034 1.00662 0.99345 1.21812 0.99083 0.98231 1.00354 0.90243 0.90931 0.89977 0.84130 0.84449 0.82513 0.81690 0.77074 0.92860 0.92127 0.96197 0.89116 0.93505 0.96249 0.92313 0.94851 0.93048 0.90494 0.92881 0.92622 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.19 37.16 0.34 -1.04 16 2 C 0.06 0.66 2.63 -27.88 -0.07 0.58 16 3 H 0.10 0.71 6.25 -51.93 -0.32 0.39 16 4 O -0.28 -3.43 9.34 -39.32 -0.37 -3.79 16 5 C 0.09 0.90 6.63 -39.08 -0.26 0.64 16 6 C -0.17 -1.37 8.42 -39.14 -0.33 -1.70 16 7 C -0.13 -0.89 10.11 -39.47 -0.40 -1.29 16 8 C 0.05 0.43 11.18 -17.54 -0.20 0.23 16 9 N -0.45 -4.78 10.36 -13.12 -0.14 -4.92 16 10 C 0.08 0.83 11.14 -17.37 -0.19 0.64 16 11 C 0.51 7.22 7.14 -10.98 -0.08 7.14 16 12 O -0.51 -9.79 16.17 -14.30 -0.23 -10.02 16 13 N -0.72 -9.09 4.25 -53.77 -0.23 -9.32 16 14 C 0.16 2.69 1.57 -67.89 -0.11 2.58 16 15 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 16 C -0.15 -2.83 5.31 -26.61 -0.14 -2.97 16 17 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 18 N -0.59 -13.91 2.43 -172.32 -0.42 -14.32 16 19 C -0.25 -6.62 9.59 -15.06 -0.14 -6.76 16 20 H 0.07 1.66 7.88 -52.48 -0.41 1.24 16 21 C 0.00 0.08 4.93 -17.43 -0.09 0.00 16 22 N -0.90 -25.78 11.15 55.49 0.62 -25.16 16 23 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.16 3.12 5.20 -3.71 -0.02 3.10 16 28 C -0.09 -1.35 0.56 -154.38 -0.09 -1.44 16 29 C -0.13 -1.87 7.83 37.16 0.29 -1.58 16 30 C -0.14 -1.71 8.31 37.16 0.31 -1.41 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.47 7.12 -51.93 -0.37 0.10 16 33 H 0.08 0.51 7.93 -51.93 -0.41 0.10 16 34 H 0.14 0.81 5.66 -52.48 -0.30 0.51 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.39 3.83 6.44 -40.82 -0.26 3.57 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.11 6.33 -51.93 -0.33 0.78 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 46 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.32 5.97 -51.93 -0.31 1.01 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.05 0.49 7.36 -51.93 -0.38 0.10 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -32.51 398.17 -8.91 -41.42 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.92 Total: 3.16 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.19 Total: 0.77 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.16 Total: -53.72 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.60 Total: -13.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.51 -8.91 -41.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724980593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.100 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds