Wall clock time and date at job start Wed Apr 1 2020 05:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47008 * 2 1 4 4 O 1.42904 * 109.46674 * 119.99764 * 2 1 3 5 5 C 1.35911 * 116.99832 * 273.42924 * 4 2 1 6 6 C 1.39133 * 120.47530 * 5.52670 * 5 4 2 7 7 C 1.38535 * 118.37663 * 179.70164 * 6 5 4 8 8 C 1.38252 * 119.21956 * 0.28257 * 7 6 5 9 9 N 1.31854 * 120.88834 * 359.97438 * 8 7 6 10 10 C 1.31844 * 121.77713 * 0.02562 * 9 8 7 11 11 C 1.50707 * 109.47168 * 239.99603 * 2 1 3 12 12 O 1.21275 * 119.99836 * 245.00177 * 11 2 1 13 13 N 1.34771 * 119.99752 * 65.00036 * 11 2 1 14 14 C 1.46499 * 119.99850 * 179.97438 * 13 11 2 15 15 H 1.09002 * 109.45575 * 324.99910 * 14 13 11 16 16 C 1.53034 * 109.46056 * 84.97234 * 14 13 11 17 17 C 1.53194 * 109.31057 * 181.38623 * 16 14 13 18 18 N 1.46921 * 108.77878 * 305.36264 * 17 16 14 19 19 C 1.36934 * 120.63494 * 233.58853 * 18 17 16 20 20 H 1.08006 * 120.00023 * 152.05082 * 19 18 17 21 21 C 1.38808 * 120.00228 * 332.05039 * 19 18 17 22 22 N 1.31625 * 119.99698 * 343.45316 * 21 19 18 23 23 Si 1.86802 * 120.00268 * 163.44750 * 21 19 18 24 24 H 1.48505 * 109.46814 * 60.00117 * 23 21 19 25 25 H 1.48493 * 109.47182 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47164 * 300.00438 * 23 21 19 27 27 C 1.46935 * 118.73374 * 53.61227 * 18 17 16 28 28 C 1.53044 * 109.46200 * 205.03086 * 14 13 11 29 29 C 1.53003 * 109.49560 * 298.56560 * 28 14 13 30 30 C 1.53007 * 109.49675 * 58.65839 * 28 14 13 31 31 H 1.09001 * 109.46700 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47245 * 300.00415 * 1 2 3 33 33 H 1.09006 * 109.46617 * 60.00653 * 1 2 3 34 34 H 1.08004 * 120.81000 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.39204 * 180.25352 * 7 6 5 36 36 H 1.08001 * 119.55985 * 179.97438 * 8 7 6 37 37 H 1.08001 * 119.65408 * 180.02562 * 10 9 8 38 38 H 0.97004 * 120.00109 * 0.02562 * 13 11 2 39 39 H 1.08993 * 109.50178 * 301.33699 * 16 14 13 40 40 H 1.08997 * 109.49565 * 61.43845 * 16 14 13 41 41 H 1.09000 * 109.59035 * 65.15554 * 17 16 14 42 42 H 1.09006 * 109.58284 * 185.43723 * 17 16 14 43 43 H 0.96996 * 119.99494 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.58793 * 66.18015 * 27 18 17 45 45 H 1.09002 * 109.58157 * 186.46362 * 27 18 17 46 46 H 1.09000 * 109.47105 * 59.99964 * 29 28 14 47 47 H 1.08995 * 109.47138 * 179.97438 * 29 28 14 48 48 H 1.08996 * 109.46803 * 299.99800 * 29 28 14 49 49 H 1.09000 * 109.46605 * 60.00337 * 30 28 14 50 50 H 1.09000 * 109.46495 * 180.02562 * 30 28 14 51 51 H 1.08995 * 109.46888 * 300.00329 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1436 0.0704 2.2959 6 6 1.7213 1.3958 2.3234 7 6 1.8763 2.1120 3.4990 8 6 2.4464 1.4933 4.5960 9 7 2.8410 0.2366 4.5353 10 6 2.7114 -0.4794 3.4358 11 6 2.0324 -0.7105 -1.2305 12 8 2.6530 -1.7467 -1.1214 13 7 1.7920 -0.1943 -2.4520 14 6 2.2808 -0.8847 -3.6481 15 1 3.2412 -1.3522 -3.4305 16 6 1.2734 -1.9590 -4.0642 17 6 1.8041 -2.7018 -5.2944 18 7 2.1081 -1.7205 -6.3447 19 6 1.5748 -1.8531 -7.5990 20 1 1.4067 -0.9782 -8.2096 21 6 1.2501 -3.1119 -8.0856 22 7 1.7388 -4.1877 -7.5058 23 14 0.1197 -3.2790 -9.5634 24 1 0.7252 -2.5884 -10.7304 25 1 -0.0692 -4.7170 -9.8819 26 1 -1.1958 -2.6644 -9.2523 27 6 2.9956 -0.5943 -6.0238 28 6 2.4513 0.1248 -4.7856 29 6 1.0971 0.7561 -5.1153 30 6 3.4335 1.2167 -4.3565 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.2792 1.8537 1.4507 35 1 1.5560 3.1417 3.5577 36 1 2.5703 2.0466 5.5152 37 1 3.0460 -1.5062 3.4243 38 1 1.2959 0.6347 -2.5391 39 1 1.1347 -2.6645 -3.2450 40 1 0.3200 -1.4895 -4.3060 41 1 2.7105 -3.2463 -5.0297 42 1 1.0489 -3.4015 -5.6526 43 1 1.5116 -5.0673 -7.8456 44 1 3.9991 -0.9669 -5.8186 45 1 3.0276 0.0971 -6.8659 46 1 0.7091 1.2652 -4.2331 47 1 1.2191 1.4753 -5.9252 48 1 0.3986 -0.0223 -5.4223 49 1 4.3982 0.7662 -4.1232 50 1 3.5542 1.9356 -5.1668 51 1 3.0473 1.7261 -3.4737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724980593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:54 Heat of formation + Delta-G solvation = -34.742130 kcal Electronic energy + Delta-G solvation = -31496.758135 eV Core-core repulsion = 27396.404823 eV Total energy + Delta-G solvation = -4100.353312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98848 -41.24040 -39.92116 -38.79552 -36.36571 -34.73588 -33.42001 -33.19345 -33.03412 -31.51374 -30.87053 -28.11866 -27.46296 -27.07729 -25.75455 -24.76970 -24.19164 -23.33440 -22.46150 -21.36399 -19.79149 -19.51277 -18.85395 -18.27895 -17.73256 -17.30160 -17.03559 -16.79992 -16.57384 -15.94899 -15.73575 -15.57176 -15.35052 -15.18721 -15.00294 -14.83452 -14.70545 -14.45765 -14.24181 -13.95759 -13.84227 -13.33349 -13.13363 -13.11804 -13.10473 -12.81394 -12.69790 -12.63524 -12.55134 -12.33605 -12.30893 -12.24010 -12.07134 -11.98692 -11.59735 -11.36021 -11.19018 -10.89937 -10.69198 -10.56670 -10.54820 -10.03611 -9.46553 -8.68224 -7.85652 -5.31745 0.15360 0.24830 1.46285 1.47967 1.49744 1.50997 1.56725 2.47844 2.52095 2.80841 3.29792 3.42645 3.57717 3.61239 3.66837 3.70931 3.77113 3.81430 3.92658 3.97787 4.06274 4.16022 4.32914 4.38560 4.45055 4.58843 4.62353 4.64605 4.69640 4.78434 4.83917 4.84571 4.94039 5.02414 5.03020 5.05201 5.08785 5.13256 5.14313 5.21905 5.29077 5.39407 5.43288 5.46041 5.52284 5.63431 5.66771 5.75569 6.15286 6.39151 6.51647 6.97861 7.14333 7.18652 7.85483 8.38649 9.21002 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002237 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.747280 B =12512.075098 C =12874.957977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.134 0.866 4 O -0.308 6.308 5 C 0.067 3.933 6 C -0.165 4.165 7 C -0.119 4.119 8 C 0.046 3.954 9 N -0.475 5.475 10 C 0.049 3.951 11 C 0.510 3.490 12 O -0.573 6.573 13 N -0.695 5.695 14 C 0.177 3.823 15 H 0.049 0.951 16 C -0.133 4.133 17 C 0.183 3.817 18 N -0.601 5.601 19 C -0.252 4.252 20 H 0.074 0.926 21 C -0.056 4.056 22 N -0.940 5.940 23 Si 0.967 3.033 24 H -0.274 1.274 25 H -0.301 1.301 26 H -0.275 1.275 27 C 0.153 3.847 28 C -0.076 4.076 29 C -0.127 4.127 30 C -0.131 4.131 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.154 0.846 38 H 0.416 0.584 39 H 0.040 0.960 40 H 0.073 0.927 41 H -0.018 1.018 42 H 0.056 0.944 43 H 0.248 0.752 44 H 0.002 0.998 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.045 0.955 49 H 0.041 0.959 50 H 0.071 0.929 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 21.007 19.508 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.151 0.849 4 O -0.220 6.220 5 C 0.020 3.980 6 C -0.192 4.192 7 C -0.138 4.138 8 C -0.111 4.111 9 N -0.184 5.184 10 C -0.109 4.109 11 C 0.296 3.704 12 O -0.451 6.451 13 N -0.349 5.349 14 C 0.073 3.927 15 H 0.068 0.932 16 C -0.173 4.173 17 C 0.056 3.944 18 N -0.323 5.323 19 C -0.382 4.382 20 H 0.092 0.908 21 C -0.251 4.251 22 N -0.586 5.586 23 Si 0.796 3.204 24 H -0.200 1.200 25 H -0.227 1.227 26 H -0.201 1.201 27 C 0.027 3.973 28 C -0.079 4.079 29 C -0.184 4.184 30 C -0.189 4.189 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.189 0.811 35 H 0.195 0.805 36 H 0.201 0.799 37 H 0.171 0.829 38 H 0.255 0.745 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.000 1.000 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.408 19.521 20.208 28.302 hybrid contribution -0.685 -0.639 -1.801 2.030 sum -4.093 18.882 18.407 26.685 Atomic orbital electron populations 1.22356 0.90270 1.04150 1.06025 1.22417 0.97225 0.97500 0.81786 0.84912 1.86235 1.81391 1.37399 1.16967 1.20357 0.97543 0.92361 0.87772 1.22146 1.02732 0.92540 1.01750 1.22432 0.96955 1.02625 0.91778 1.23291 0.96739 0.90520 1.00582 1.67742 1.16160 1.08907 1.25609 1.22246 1.00101 1.01228 0.87299 1.20738 0.79259 0.85113 0.85329 1.90756 1.41799 1.25479 1.87088 1.45859 1.57192 1.27819 1.04067 1.20615 0.95974 0.92460 0.83700 0.93247 1.22365 0.99698 0.97883 0.97382 1.20451 0.96444 0.90929 0.86581 1.44224 1.53398 1.26784 1.07906 1.19479 1.34170 0.91837 0.92761 0.90822 1.25856 1.02305 0.95800 1.01145 1.70206 1.46425 0.97493 1.44525 0.85339 0.79482 0.75920 0.79693 1.19991 1.22732 1.20099 1.21118 0.91118 0.89462 0.95640 1.21185 0.98073 0.94837 0.93755 1.21743 0.95034 0.99993 1.01604 1.21775 0.97629 0.97278 1.02207 0.92598 0.88696 0.87403 0.81149 0.80471 0.79915 0.82912 0.74500 0.94082 0.90814 1.00013 0.92517 0.94325 0.97998 0.91642 0.90649 0.92108 0.93597 0.93983 0.91026 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 9.19 71.98 0.66 -1.44 16 2 C 0.07 1.25 2.63 29.85 0.08 1.32 16 3 H 0.13 1.32 6.25 -2.39 -0.01 1.30 16 4 O -0.31 -7.52 9.34 -73.56 -0.69 -8.20 16 5 C 0.07 1.34 6.63 22.60 0.15 1.49 16 6 C -0.17 -1.99 8.42 22.56 0.19 -1.80 16 7 C -0.12 -1.10 10.11 22.34 0.23 -0.88 16 8 C 0.05 0.62 11.18 84.69 0.95 1.57 16 9 N -0.47 -9.94 10.36 -195.43 -2.02 -11.96 16 10 C 0.05 1.09 11.14 84.80 0.94 2.03 16 11 C 0.51 13.80 7.14 87.66 0.63 14.43 16 12 O -0.57 -22.70 16.17 15.97 0.26 -22.44 16 13 N -0.70 -16.01 4.25 -442.41 -1.88 -17.89 16 14 C 0.18 5.73 1.57 45.02 0.07 5.80 16 15 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 16 C -0.13 -5.19 5.31 30.67 0.16 -5.03 16 17 C 0.18 9.14 5.30 86.36 0.46 9.59 16 18 N -0.60 -29.29 2.43 -699.09 -1.70 -30.99 16 19 C -0.25 -13.40 9.59 84.03 0.81 -12.59 16 20 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 21 C -0.06 -3.12 4.93 84.86 0.42 -2.70 16 22 N -0.94 -56.63 11.15 21.65 0.24 -56.39 16 23 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 C 0.15 6.00 5.20 86.36 0.45 6.45 16 28 C -0.08 -2.19 0.56 -52.10 -0.03 -2.22 16 29 C -0.13 -3.14 7.83 71.98 0.56 -2.58 16 30 C -0.13 -2.82 8.31 71.98 0.60 -2.23 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 0.79 7.12 -2.39 -0.02 0.77 16 33 H 0.11 0.76 7.93 -2.38 -0.02 0.74 16 34 H 0.17 0.91 5.66 -2.91 -0.02 0.90 16 35 H 0.18 0.24 8.06 -2.91 -0.02 0.21 16 36 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 38 H 0.42 5.98 6.44 -92.71 -0.60 5.39 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 2.69 6.33 -2.39 -0.02 2.67 16 41 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 42 H 0.06 3.21 6.04 -2.38 -0.01 3.19 16 43 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 44 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.07 2.46 7.93 -2.39 -0.02 2.44 16 46 H 0.07 1.24 6.58 -2.39 -0.02 1.22 16 47 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.04 1.46 5.97 -2.39 -0.01 1.44 16 49 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.08 1.21 7.36 -2.39 -0.02 1.19 16 Total: -1.00 -79.26 398.17 3.90 -75.36 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.34 Total: 14.81 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 7.32 Total: 11.22 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -5.36 Total: -117.23 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.43 Total: -30.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -79.26 3.90 -75.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724980593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.620 kcal (2) G-P(sol) polarization free energy of solvation -79.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds