Wall clock time and date at job start Wed Apr 1 2020 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.46952 * 2 1 4 4 O 1.42896 * 109.47374 * 120.00098 * 2 1 3 5 5 C 1.35912 * 116.99899 * 272.72252 * 4 2 1 6 6 C 1.39140 * 120.47652 * 4.49789 * 5 4 2 7 7 C 1.38535 * 118.37638 * 179.71735 * 6 5 4 8 8 C 1.38258 * 119.21543 * 0.57844 * 7 6 5 9 9 N 1.31846 * 120.89144 * 359.68249 * 8 7 6 10 10 C 1.31835 * 121.77737 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47302 * 240.00250 * 2 1 3 12 12 O 1.21279 * 120.00201 * 244.99754 * 11 2 1 13 13 N 1.34783 * 120.00104 * 65.00136 * 11 2 1 14 14 C 1.46498 * 119.99844 * 180.02562 * 13 11 2 15 15 H 1.08998 * 109.46184 * 35.02330 * 14 13 11 16 16 C 1.53041 * 109.44391 * 275.05433 * 14 13 11 17 17 C 1.53627 * 109.24051 * 178.50196 * 16 14 13 18 18 N 1.46930 * 108.54543 * 54.85393 * 17 16 14 19 19 C 1.36936 * 120.62694 * 126.37058 * 18 17 16 20 20 H 1.07998 * 120.00067 * 327.52552 * 19 18 17 21 21 C 1.38814 * 119.99779 * 147.53440 * 19 18 17 22 22 N 1.31617 * 119.99988 * 335.50591 * 21 19 18 23 23 Si 1.86803 * 119.99895 * 155.50696 * 21 19 18 24 24 H 1.48499 * 109.47176 * 59.99958 * 23 21 19 25 25 H 1.48497 * 109.46864 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47310 * 299.99711 * 23 21 19 27 27 C 1.46927 * 118.73868 * 306.09960 * 18 17 16 28 28 C 1.53040 * 109.45925 * 154.99964 * 14 13 11 29 29 C 1.52997 * 109.50164 * 61.41489 * 28 14 13 30 30 C 1.53002 * 109.52248 * 301.33278 * 28 14 13 31 31 H 1.08997 * 109.47140 * 60.00016 * 1 2 3 32 32 H 1.09005 * 109.46987 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47718 * 299.99761 * 1 2 3 34 34 H 1.07998 * 120.80960 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.39079 * 180.26525 * 7 6 5 36 36 H 1.08002 * 119.54811 * 179.70359 * 8 7 6 37 37 H 1.08008 * 119.65422 * 180.02562 * 10 9 8 38 38 H 0.96999 * 119.99661 * 359.97438 * 13 11 2 39 39 H 1.08996 * 109.50158 * 298.57437 * 16 14 13 40 40 H 1.08994 * 109.50087 * 58.64626 * 16 14 13 41 41 H 1.09003 * 109.74118 * 295.11840 * 17 16 14 42 42 H 1.08996 * 109.66731 * 174.55024 * 17 16 14 43 43 H 0.97001 * 120.00190 * 354.20667 * 22 21 19 44 44 H 1.08997 * 109.58310 * 173.64749 * 27 18 17 45 45 H 1.09003 * 109.58279 * 293.92962 * 27 18 17 46 46 H 1.09001 * 109.47244 * 179.84068 * 29 28 14 47 47 H 1.09005 * 109.46812 * 299.83746 * 29 28 14 48 48 H 1.08996 * 109.47182 * 59.83905 * 29 28 14 49 49 H 1.09000 * 109.46860 * 300.14881 * 30 28 14 50 50 H 1.09005 * 109.46811 * 60.14590 * 30 28 14 51 51 H 1.08997 * 109.47677 * 180.14713 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1578 0.0735 2.2919 6 6 1.7685 1.4092 2.3099 7 6 1.9371 2.1284 3.4818 8 6 2.4934 1.5040 4.5827 9 7 2.8569 0.2377 4.5309 10 6 2.7081 -0.4831 3.4371 11 6 2.0323 -0.7103 -1.2305 12 8 2.6530 -1.7466 -1.1216 13 7 1.7919 -0.1940 -2.4521 14 6 2.2799 -0.8849 -3.6482 15 1 2.2318 -1.9623 -3.4903 16 6 3.7288 -0.4733 -3.9189 17 6 4.2478 -1.2286 -5.1519 18 7 3.3307 -0.9799 -6.2726 19 6 3.8019 -0.5047 -7.4673 20 1 4.6525 0.1605 -7.4862 21 6 3.1861 -0.8779 -8.6541 22 7 2.5063 -2.0032 -8.7172 23 14 3.3223 0.2169 -10.1615 24 1 4.7517 0.3728 -10.5325 25 1 2.5828 -0.4017 -11.2909 26 1 2.7411 1.5497 -9.8595 27 6 1.8994 -1.2564 -6.0889 28 6 1.4076 -0.5059 -4.8473 29 6 1.5017 1.0015 -5.0912 30 6 -0.0465 -0.8875 -4.5627 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.3414 1.8727 1.4329 35 1 1.6421 3.1661 3.5332 36 1 2.6317 2.0610 5.4976 37 1 3.0175 -1.5179 3.4328 38 1 1.2952 0.6346 -2.5392 39 1 3.7740 0.6004 -4.1014 40 1 4.3451 -0.7217 -3.0550 41 1 4.2848 -2.2973 -4.9403 42 1 5.2445 -0.8703 -5.4089 43 1 2.5050 -2.6121 -7.9621 44 1 1.3464 -0.9164 -6.9644 45 1 1.7486 -2.3276 -5.9547 46 1 0.8826 1.2705 -5.9470 47 1 1.1516 1.5351 -4.2074 48 1 2.5379 1.2730 -5.2927 49 1 -0.1128 -1.9613 -4.3879 50 1 -0.3960 -0.3533 -3.6792 51 1 -0.6665 -0.6196 -5.4182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724980600.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:59 Heat of formation + Delta-G solvation = -19.319697 kcal Electronic energy + Delta-G solvation = -31574.763555 eV Core-core repulsion = 27475.079010 eV Total energy + Delta-G solvation = -4099.684545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.21548 -40.21278 -38.90024 -37.77751 -34.88298 -33.36715 -32.63653 -32.49556 -31.86459 -30.37747 -29.19519 -26.95869 -26.19361 -25.62035 -24.72346 -23.97771 -23.19515 -22.06366 -20.80891 -20.30268 -18.84971 -18.63031 -17.62819 -17.18675 -17.08857 -16.43130 -16.07652 -15.81073 -14.89978 -14.82063 -14.59851 -14.52282 -14.15569 -13.95660 -13.78960 -13.70742 -13.64204 -13.36225 -13.34117 -12.78507 -12.71554 -12.56108 -12.52452 -11.99877 -11.96067 -11.64246 -11.63655 -11.53805 -10.99870 -10.98902 -10.73019 -10.51819 -10.41694 -10.21802 -10.13934 -10.09475 -9.96397 -9.88688 -9.75023 -9.29406 -8.87289 -8.78558 -8.39137 -6.89280 -6.09531 -3.31596 0.74821 0.84726 2.30156 2.49051 3.34768 3.42415 3.46615 3.48053 3.66942 4.09295 4.18703 4.34381 4.35401 4.43655 4.52278 4.55211 4.70224 4.82271 4.98315 5.06956 5.08441 5.14501 5.27564 5.34995 5.36138 5.47141 5.57462 5.64861 5.65626 5.69500 5.74813 5.87978 5.91155 6.00408 6.02768 6.11795 6.23275 6.27058 6.32523 6.44798 6.50070 6.68717 6.71311 6.75411 6.80879 6.83781 7.00473 7.07758 7.47372 7.59454 8.01417 8.15090 8.55050 9.07868 9.79940 10.26584 11.17153 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.002215 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.650351 B =12635.303873 C =12763.641966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.063 3.937 3 H 0.097 0.903 4 O -0.275 6.275 5 C 0.085 3.915 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.054 3.946 9 N -0.447 5.447 10 C 0.077 3.923 11 C 0.514 3.486 12 O -0.516 6.516 13 N -0.715 5.715 14 C 0.166 3.834 15 H 0.082 0.918 16 C -0.143 4.143 17 C 0.148 3.852 18 N -0.595 5.595 19 C -0.350 4.350 20 H 0.053 0.947 21 C -0.020 4.020 22 N -0.912 5.912 23 Si 1.062 2.938 24 H -0.293 1.293 25 H -0.286 1.286 26 H -0.293 1.293 27 C 0.169 3.831 28 C -0.091 4.091 29 C -0.128 4.128 30 C -0.136 4.136 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.396 0.604 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.058 0.942 43 H 0.269 0.731 44 H 0.080 0.920 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.031 0.969 48 H 0.072 0.928 49 H 0.052 0.948 50 H 0.045 0.955 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.533 9.980 21.098 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.003 3.997 3 H 0.114 0.886 4 O -0.186 6.186 5 C 0.037 3.963 6 C -0.198 4.198 7 C -0.149 4.149 8 C -0.103 4.103 9 N -0.155 5.155 10 C -0.082 4.082 11 C 0.297 3.703 12 O -0.390 6.390 13 N -0.367 5.367 14 C 0.063 3.937 15 H 0.101 0.899 16 C -0.184 4.184 17 C 0.021 3.979 18 N -0.318 5.318 19 C -0.479 4.479 20 H 0.071 0.929 21 C -0.223 4.223 22 N -0.551 5.551 23 Si 0.892 3.108 24 H -0.220 1.220 25 H -0.211 1.211 26 H -0.220 1.220 27 C 0.042 3.958 28 C -0.094 4.094 29 C -0.185 4.185 30 C -0.194 4.194 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.231 0.769 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.155 8.800 20.254 22.925 hybrid contribution -0.160 0.942 0.781 1.234 sum -6.315 9.742 21.035 24.026 Atomic orbital electron populations 1.22305 0.92345 1.04755 1.03746 1.22329 0.95928 0.97073 0.84352 0.88565 1.86268 1.80587 1.35565 1.16202 1.20289 0.96440 0.91024 0.88594 1.21782 1.03980 0.93753 1.00257 1.22007 0.98714 1.01196 0.93030 1.22695 0.97680 0.91124 0.98809 1.67758 1.14696 1.07379 1.25714 1.22288 0.98556 1.01074 0.86285 1.19937 0.80517 0.85741 0.84063 1.90759 1.39161 1.22888 1.86190 1.46212 1.57407 1.27699 1.05417 1.21021 0.93740 0.96936 0.82028 0.89947 1.22523 0.95086 1.01426 0.99320 1.20982 0.93984 0.95844 0.87053 1.44099 1.00637 1.76685 1.10355 1.19884 1.18459 1.25295 0.84289 0.92909 1.25890 0.98902 0.97909 0.99609 1.70780 1.43754 1.07247 1.33313 0.83563 0.75947 0.75216 0.76058 1.21958 1.21132 1.22025 1.20952 0.85785 0.95069 0.94028 1.21439 0.93945 0.97533 0.96434 1.21755 1.03402 0.93965 0.99397 1.21801 0.95889 1.01051 1.00698 0.89996 0.90328 0.90857 0.84132 0.84402 0.82474 0.81718 0.76889 0.91682 0.92686 0.96334 0.92327 0.92030 0.90178 0.96331 0.92690 0.95030 0.90902 0.92938 0.93611 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.22 37.16 0.34 -0.94 16 2 C 0.06 0.63 2.63 -27.89 -0.07 0.56 16 3 H 0.10 0.73 6.15 -51.92 -0.32 0.41 16 4 O -0.28 -3.34 9.34 -39.33 -0.37 -3.71 16 5 C 0.08 0.88 6.64 -39.07 -0.26 0.62 16 6 C -0.17 -1.36 8.48 -39.14 -0.33 -1.69 16 7 C -0.13 -0.88 10.11 -39.46 -0.40 -1.28 16 8 C 0.05 0.43 11.18 -17.54 -0.20 0.23 16 9 N -0.45 -4.72 10.36 -13.12 -0.14 -4.86 16 10 C 0.08 0.82 11.14 -17.38 -0.19 0.63 16 11 C 0.51 7.02 7.14 -10.98 -0.08 6.94 16 12 O -0.52 -9.50 16.17 -14.30 -0.23 -9.73 16 13 N -0.71 -8.95 4.26 -53.77 -0.23 -9.18 16 14 C 0.17 2.67 1.57 -67.89 -0.11 2.56 16 15 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 16 C -0.14 -2.50 5.32 -26.38 -0.14 -2.64 16 17 C 0.15 3.10 6.54 -3.48 -0.02 3.07 16 18 N -0.59 -14.05 2.22 -172.05 -0.38 -14.43 16 19 C -0.35 -9.31 9.44 -15.06 -0.14 -9.45 16 20 H 0.05 1.43 7.94 -52.49 -0.42 1.01 16 21 C -0.02 -0.55 4.67 -17.43 -0.08 -0.63 16 22 N -0.91 -26.49 12.59 55.49 0.70 -25.79 16 23 Si 1.06 24.43 29.98 -169.99 -5.10 19.33 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.17 3.65 3.44 -3.71 -0.01 3.63 16 28 C -0.09 -1.49 0.56 -154.39 -0.09 -1.58 16 29 C -0.13 -1.98 7.83 37.16 0.29 -1.69 16 30 C -0.14 -1.91 8.31 37.16 0.31 -1.60 16 31 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.44 7.28 -51.93 -0.38 0.06 16 34 H 0.14 0.80 5.72 -52.49 -0.30 0.50 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.17 1.60 8.06 -52.48 -0.42 1.17 16 38 H 0.40 3.87 6.44 -40.82 -0.26 3.60 16 39 H 0.06 1.11 6.33 -51.93 -0.33 0.79 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.27 7.92 6.88 -40.82 -0.28 7.64 16 44 H 0.08 1.95 6.62 -51.93 -0.34 1.61 16 45 H 0.02 0.43 7.87 -51.93 -0.41 0.02 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 48 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 49 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.04 0.52 7.37 -51.93 -0.38 0.14 16 51 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -32.81 398.05 -8.82 -41.63 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.89 Total: 3.99 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.18 Total: -3.25 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.05 Total: -54.26 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.60 Total: -13.43 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.10 Total: 19.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.81 -8.82 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724980600.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.309 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds