Wall clock time and date at job start Wed Apr 1 2020 05:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.46952 * 2 1 4 4 O 1.42896 * 109.47374 * 120.00098 * 2 1 3 5 5 C 1.35912 * 116.99899 * 272.72252 * 4 2 1 6 6 C 1.39140 * 120.47652 * 4.49789 * 5 4 2 7 7 C 1.38535 * 118.37638 * 179.71735 * 6 5 4 8 8 C 1.38258 * 119.21543 * 0.57844 * 7 6 5 9 9 N 1.31846 * 120.89144 * 359.68249 * 8 7 6 10 10 C 1.31835 * 121.77737 * 0.02562 * 9 8 7 11 11 C 1.50699 * 109.47302 * 240.00250 * 2 1 3 12 12 O 1.21279 * 120.00201 * 244.99754 * 11 2 1 13 13 N 1.34783 * 120.00104 * 65.00136 * 11 2 1 14 14 C 1.46498 * 119.99844 * 180.02562 * 13 11 2 15 15 H 1.08998 * 109.46184 * 35.02330 * 14 13 11 16 16 C 1.53041 * 109.44391 * 275.05433 * 14 13 11 17 17 C 1.53627 * 109.24051 * 178.50196 * 16 14 13 18 18 N 1.46930 * 108.54543 * 54.85393 * 17 16 14 19 19 C 1.36936 * 120.62694 * 126.37058 * 18 17 16 20 20 H 1.07998 * 120.00067 * 327.52552 * 19 18 17 21 21 C 1.38814 * 119.99779 * 147.53440 * 19 18 17 22 22 N 1.31617 * 119.99988 * 335.50591 * 21 19 18 23 23 Si 1.86803 * 119.99895 * 155.50696 * 21 19 18 24 24 H 1.48499 * 109.47176 * 59.99958 * 23 21 19 25 25 H 1.48497 * 109.46864 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47310 * 299.99711 * 23 21 19 27 27 C 1.46927 * 118.73868 * 306.09960 * 18 17 16 28 28 C 1.53040 * 109.45925 * 154.99964 * 14 13 11 29 29 C 1.52997 * 109.50164 * 61.41489 * 28 14 13 30 30 C 1.53002 * 109.52248 * 301.33278 * 28 14 13 31 31 H 1.08997 * 109.47140 * 60.00016 * 1 2 3 32 32 H 1.09005 * 109.46987 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47718 * 299.99761 * 1 2 3 34 34 H 1.07998 * 120.80960 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.39079 * 180.26525 * 7 6 5 36 36 H 1.08002 * 119.54811 * 179.70359 * 8 7 6 37 37 H 1.08008 * 119.65422 * 180.02562 * 10 9 8 38 38 H 0.96999 * 119.99661 * 359.97438 * 13 11 2 39 39 H 1.08996 * 109.50158 * 298.57437 * 16 14 13 40 40 H 1.08994 * 109.50087 * 58.64626 * 16 14 13 41 41 H 1.09003 * 109.74118 * 295.11840 * 17 16 14 42 42 H 1.08996 * 109.66731 * 174.55024 * 17 16 14 43 43 H 0.97001 * 120.00190 * 354.20667 * 22 21 19 44 44 H 1.08997 * 109.58310 * 173.64749 * 27 18 17 45 45 H 1.09003 * 109.58279 * 293.92962 * 27 18 17 46 46 H 1.09001 * 109.47244 * 179.84068 * 29 28 14 47 47 H 1.09005 * 109.46812 * 299.83746 * 29 28 14 48 48 H 1.08996 * 109.47182 * 59.83905 * 29 28 14 49 49 H 1.09000 * 109.46860 * 300.14881 * 30 28 14 50 50 H 1.09005 * 109.46811 * 60.14590 * 30 28 14 51 51 H 1.08997 * 109.47677 * 180.14713 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1578 0.0735 2.2919 6 6 1.7685 1.4092 2.3099 7 6 1.9371 2.1284 3.4818 8 6 2.4934 1.5040 4.5827 9 7 2.8569 0.2377 4.5309 10 6 2.7081 -0.4831 3.4371 11 6 2.0323 -0.7103 -1.2305 12 8 2.6530 -1.7466 -1.1216 13 7 1.7919 -0.1940 -2.4521 14 6 2.2799 -0.8849 -3.6482 15 1 2.2318 -1.9623 -3.4903 16 6 3.7288 -0.4733 -3.9189 17 6 4.2478 -1.2286 -5.1519 18 7 3.3307 -0.9799 -6.2726 19 6 3.8019 -0.5047 -7.4673 20 1 4.6525 0.1605 -7.4862 21 6 3.1861 -0.8779 -8.6541 22 7 2.5063 -2.0032 -8.7172 23 14 3.3223 0.2169 -10.1615 24 1 4.7517 0.3728 -10.5325 25 1 2.5828 -0.4017 -11.2909 26 1 2.7411 1.5497 -9.8595 27 6 1.8994 -1.2564 -6.0889 28 6 1.4076 -0.5059 -4.8473 29 6 1.5017 1.0015 -5.0912 30 6 -0.0465 -0.8875 -4.5627 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.3414 1.8727 1.4329 35 1 1.6421 3.1661 3.5332 36 1 2.6317 2.0610 5.4976 37 1 3.0175 -1.5179 3.4328 38 1 1.2952 0.6346 -2.5392 39 1 3.7740 0.6004 -4.1014 40 1 4.3451 -0.7217 -3.0550 41 1 4.2848 -2.2973 -4.9403 42 1 5.2445 -0.8703 -5.4089 43 1 2.5050 -2.6121 -7.9621 44 1 1.3464 -0.9164 -6.9644 45 1 1.7486 -2.3276 -5.9547 46 1 0.8826 1.2705 -5.9470 47 1 1.1516 1.5351 -4.2074 48 1 2.5379 1.2730 -5.2927 49 1 -0.1128 -1.9613 -4.3879 50 1 -0.3960 -0.3533 -3.6792 51 1 -0.6665 -0.6196 -5.4182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724980600.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:58 Heat of formation + Delta-G solvation = -39.607940 kcal Electronic energy + Delta-G solvation = -31575.643319 eV Core-core repulsion = 27475.079010 eV Total energy + Delta-G solvation = -4100.564309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02332 -41.30457 -40.00640 -38.84876 -36.52661 -34.62753 -33.98228 -33.24966 -33.03927 -31.19439 -30.69700 -28.22296 -27.75191 -26.95154 -25.77700 -24.77611 -24.22185 -23.34746 -22.47187 -21.41957 -19.88892 -19.53436 -19.43004 -18.43157 -17.74575 -17.35306 -17.06412 -16.77256 -16.33085 -16.06355 -15.78173 -15.48241 -15.42437 -15.33106 -15.12280 -15.01561 -14.76327 -14.48476 -14.19238 -14.02993 -13.93149 -13.65120 -13.35056 -13.15069 -13.00673 -12.91080 -12.68517 -12.64336 -12.53352 -12.46458 -12.30319 -12.16718 -11.91778 -11.80185 -11.69873 -11.41066 -11.18334 -10.93464 -10.72305 -10.58449 -10.45659 -10.12561 -9.48011 -8.91520 -8.22137 -5.44258 0.13791 0.23009 1.43780 1.44698 1.59693 1.66093 1.85162 2.43535 2.65783 2.79234 3.21873 3.38014 3.50087 3.57006 3.59527 3.63075 3.75331 3.78004 3.87365 3.91911 3.97906 4.14461 4.22209 4.30383 4.31879 4.46284 4.51778 4.58550 4.62725 4.71565 4.75806 4.77094 4.82201 4.87058 4.94572 5.00632 5.02210 5.07392 5.10704 5.12088 5.12369 5.20380 5.27665 5.36147 5.41128 5.45850 5.63362 5.88835 6.12575 6.39157 6.46303 6.96245 7.05668 7.12509 7.76827 8.23377 8.99734 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.002215 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.650351 B =12635.303873 C =12763.641966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.068 3.932 3 H 0.130 0.870 4 O -0.306 6.306 5 C 0.068 3.932 6 C -0.167 4.167 7 C -0.119 4.119 8 C 0.046 3.954 9 N -0.474 5.474 10 C 0.050 3.950 11 C 0.512 3.488 12 O -0.571 6.571 13 N -0.696 5.696 14 C 0.178 3.822 15 H 0.052 0.948 16 C -0.128 4.128 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.350 4.350 20 H 0.048 0.952 21 C -0.071 4.071 22 N -0.940 5.940 23 Si 1.113 2.887 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.176 3.824 28 C -0.080 4.080 29 C -0.123 4.123 30 C -0.132 4.132 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.155 0.845 38 H 0.416 0.584 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.001 0.999 42 H 0.053 0.947 43 H 0.251 0.749 44 H 0.050 0.950 45 H -0.009 1.009 46 H 0.047 0.953 47 H 0.079 0.921 48 H 0.049 0.951 49 H 0.040 0.960 50 H 0.084 0.916 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 14.324 22.741 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 H 0.147 0.853 4 O -0.218 6.218 5 C 0.020 3.980 6 C -0.193 4.193 7 C -0.139 4.139 8 C -0.111 4.111 9 N -0.184 5.184 10 C -0.108 4.108 11 C 0.298 3.702 12 O -0.449 6.449 13 N -0.350 5.350 14 C 0.073 3.927 15 H 0.070 0.930 16 C -0.168 4.168 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.480 4.480 20 H 0.066 0.934 21 C -0.268 4.268 22 N -0.581 5.581 23 Si 0.937 3.063 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.199 1.199 27 C 0.049 3.951 28 C -0.082 4.082 29 C -0.180 4.180 30 C -0.190 4.190 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.187 0.813 35 H 0.194 0.806 36 H 0.201 0.799 37 H 0.172 0.828 38 H 0.255 0.745 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.019 0.981 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.009 0.991 46 H 0.066 0.934 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.103 0.897 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.833 13.182 21.938 26.765 hybrid contribution 0.433 -0.434 0.367 0.715 sum -7.400 12.748 22.305 26.735 Atomic orbital electron populations 1.22347 0.89973 1.04346 1.06034 1.22423 0.97451 0.97417 0.81815 0.85263 1.86224 1.81358 1.37082 1.17156 1.20351 0.97593 0.92217 0.87850 1.22136 1.02961 0.92466 1.01713 1.22430 0.96900 1.02699 0.91824 1.23282 0.96889 0.90430 1.00502 1.67738 1.15855 1.08879 1.25915 1.22256 1.00066 1.01231 0.87221 1.20712 0.79231 0.85044 0.85199 1.90747 1.41642 1.25519 1.86994 1.45852 1.57132 1.27976 1.04054 1.20562 0.92995 0.95677 0.83425 0.92962 1.22309 0.95930 1.01386 0.97158 1.21047 0.93711 0.95425 0.88012 1.44291 1.01869 1.76764 1.10247 1.20103 1.18110 1.24285 0.85485 0.93417 1.27228 0.98777 0.98286 1.02508 1.70912 1.46023 1.08369 1.32769 0.82895 0.76556 0.74264 0.72585 1.20522 1.22095 1.19910 1.20808 0.84610 0.94101 0.95562 1.21222 0.95402 0.97881 0.93697 1.21700 1.02018 0.92856 1.01401 1.21777 0.93816 1.00934 1.02468 0.87345 0.92172 0.88848 0.81268 0.80573 0.79935 0.82751 0.74522 0.90400 0.92632 0.98085 0.92851 0.93932 0.93141 0.99137 0.93419 0.90183 0.93235 0.94067 0.89699 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.22 71.98 0.66 -1.15 16 2 C 0.07 1.15 2.63 29.85 0.08 1.23 16 3 H 0.13 1.29 6.15 -2.38 -0.01 1.28 16 4 O -0.31 -7.13 9.34 -73.57 -0.69 -7.82 16 5 C 0.07 1.31 6.64 22.60 0.15 1.46 16 6 C -0.17 -1.99 8.48 22.56 0.19 -1.80 16 7 C -0.12 -1.12 10.11 22.35 0.23 -0.89 16 8 C 0.05 0.62 11.18 84.70 0.95 1.57 16 9 N -0.47 -9.75 10.36 -195.43 -2.02 -11.77 16 10 C 0.05 1.08 11.14 84.81 0.94 2.02 16 11 C 0.51 13.12 7.14 87.66 0.63 13.75 16 12 O -0.57 -21.33 16.17 15.96 0.26 -21.07 16 13 N -0.70 -15.49 4.26 -442.40 -1.88 -17.37 16 14 C 0.18 5.62 1.57 45.02 0.07 5.69 16 15 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 16 C -0.13 -4.43 5.32 30.82 0.16 -4.27 16 17 C 0.14 6.27 6.54 86.51 0.57 6.83 16 18 N -0.61 -29.75 2.22 -698.24 -1.55 -31.30 16 19 C -0.35 -19.05 9.44 84.03 0.79 -18.26 16 20 H 0.05 2.61 7.94 -2.91 -0.02 2.59 16 21 C -0.07 -3.96 4.67 84.86 0.40 -3.56 16 22 N -0.94 -56.73 12.59 21.65 0.27 -56.46 16 23 Si 1.11 49.62 29.98 68.60 2.06 51.68 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 C 0.18 7.91 3.44 86.36 0.30 8.21 16 28 C -0.08 -2.55 0.56 -52.10 -0.03 -2.58 16 29 C -0.12 -3.46 7.83 71.98 0.56 -2.90 16 30 C -0.13 -3.44 8.31 71.98 0.60 -2.84 16 31 H 0.11 0.57 7.92 -2.39 -0.02 0.56 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 0.67 7.28 -2.39 -0.02 0.65 16 34 H 0.17 0.93 5.72 -2.91 -0.02 0.92 16 35 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 36 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.42 5.95 6.44 -92.71 -0.60 5.36 16 39 H 0.08 2.53 6.33 -2.39 -0.02 2.51 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16 42 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 43 H 0.25 15.67 6.88 -92.71 -0.64 15.03 16 44 H 0.05 2.56 6.62 -2.39 -0.02 2.54 16 45 H -0.01 -0.46 7.87 -2.39 -0.02 -0.48 16 46 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.08 1.47 6.58 -2.38 -0.02 1.46 16 48 H 0.05 1.65 5.97 -2.39 -0.01 1.64 16 49 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.08 1.55 7.37 -2.38 -0.02 1.53 16 51 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -78.46 398.05 4.16 -74.29 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.47 Total: 17.30 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 7.25 Total: 2.51 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -5.18 Total: -116.90 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.43 Total: -28.89 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.06 Total: 51.68 kcal Total: -78.46 4.16 -74.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724980600.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.685 kcal (2) G-P(sol) polarization free energy of solvation -78.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds