Wall clock time and date at job start Wed Apr 1 2020 05:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47357 * 2 1 4 4 O 1.42907 * 109.46647 * 240.00181 * 2 1 3 5 5 C 1.35906 * 116.99805 * 84.14953 * 4 2 1 6 6 C 1.39142 * 120.47603 * 358.94523 * 5 4 2 7 7 C 1.38541 * 118.37240 * 179.72150 * 6 5 4 8 8 C 1.38249 * 119.21952 * 0.57575 * 7 6 5 9 9 N 1.31848 * 120.89110 * 359.68836 * 8 7 6 10 10 C 1.31844 * 121.77820 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47201 * 120.00370 * 2 1 3 12 12 O 1.21280 * 120.00212 * 114.99879 * 11 2 1 13 13 N 1.34777 * 119.99999 * 294.72150 * 11 2 1 14 14 C 1.46493 * 120.00271 * 179.97438 * 13 11 2 15 15 H 1.08998 * 109.45885 * 325.00417 * 14 13 11 16 16 C 1.53044 * 109.45784 * 84.97270 * 14 13 11 17 17 C 1.53197 * 109.31297 * 181.40050 * 16 14 13 18 18 N 1.46921 * 108.76366 * 305.34623 * 17 16 14 19 19 C 1.36943 * 120.63472 * 233.59294 * 18 17 16 20 20 H 1.07994 * 120.00330 * 151.51033 * 19 18 17 21 21 C 1.38814 * 119.99513 * 331.51169 * 19 18 17 22 22 N 1.31620 * 120.00225 * 331.18844 * 21 19 18 23 23 Si 1.86799 * 120.00016 * 151.18601 * 21 19 18 24 24 H 1.48493 * 109.46953 * 94.98960 * 23 21 19 25 25 H 1.48505 * 109.47206 * 214.99161 * 23 21 19 26 26 H 1.48498 * 109.47033 * 334.99226 * 23 21 19 27 27 C 1.46930 * 118.73997 * 53.61647 * 18 17 16 28 28 C 1.53039 * 109.46485 * 205.02942 * 14 13 11 29 29 C 1.53007 * 109.49580 * 298.56594 * 28 14 13 30 30 C 1.53001 * 109.49532 * 58.66325 * 28 14 13 31 31 H 1.09002 * 109.47192 * 60.00074 * 1 2 3 32 32 H 1.09004 * 109.47106 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46831 * 299.99605 * 1 2 3 34 34 H 1.08001 * 120.80955 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.38440 * 180.26341 * 7 6 5 36 36 H 1.08001 * 119.55323 * 179.70153 * 8 7 6 37 37 H 1.07997 * 119.65810 * 180.02562 * 10 9 8 38 38 H 0.97006 * 119.99696 * 0.02562 * 13 11 2 39 39 H 1.08998 * 109.49703 * 301.33610 * 16 14 13 40 40 H 1.09002 * 109.49435 * 61.43687 * 16 14 13 41 41 H 1.08994 * 109.58501 * 185.56543 * 17 16 14 42 42 H 1.09002 * 109.71283 * 65.20614 * 17 16 14 43 43 H 0.96992 * 120.00444 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.58840 * 186.60513 * 27 18 17 45 45 H 1.09001 * 109.70545 * 66.24887 * 27 18 17 46 46 H 1.09000 * 109.46876 * 60.00037 * 29 28 14 47 47 H 1.08997 * 109.46614 * 179.97438 * 29 28 14 48 48 H 1.08995 * 109.47069 * 299.99885 * 29 28 14 49 49 H 1.08996 * 109.47099 * 60.00288 * 30 28 14 50 50 H 1.09000 * 109.47030 * 180.02562 * 30 28 14 51 51 H 1.09004 * 109.47118 * 299.99719 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0955 0.0582 -2.3086 6 6 1.7128 1.3959 -2.3210 7 6 1.8274 2.1025 -3.5072 8 6 2.3030 1.4574 -4.6337 9 7 2.6521 0.1867 -4.5895 10 6 2.5637 -0.5194 -3.4796 11 6 2.0324 -0.7105 1.2304 12 8 2.6530 -1.7467 1.1214 13 7 1.7968 -0.1914 2.4517 14 6 2.2846 -0.8823 3.6478 15 1 2.2324 -1.9597 3.4915 16 6 3.7356 -0.4756 3.9153 17 6 4.2535 -1.2265 5.1462 18 7 3.3404 -0.9781 6.2701 19 6 3.8156 -0.5032 7.4634 20 1 3.1792 0.0952 8.0984 21 6 5.1154 -0.7909 7.8567 22 7 5.6944 -1.9019 7.4532 23 14 6.0429 0.3987 8.9585 24 1 5.8978 -0.0229 10.3749 25 1 7.4807 0.3993 8.5869 26 1 5.4873 1.7655 8.7896 27 6 1.9077 -1.2494 6.0897 28 6 1.4162 -0.4986 4.8482 29 6 1.5166 1.0089 5.0900 30 6 -0.0396 -0.8756 4.5664 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.3395 1.8728 -1.4268 35 1 1.5437 3.1435 -3.5525 36 1 2.3900 2.0017 -5.5624 37 1 2.8595 -1.5580 -3.4820 38 1 1.3035 0.6394 2.5387 39 1 4.3494 -0.7279 3.0507 40 1 3.7849 0.5981 4.0965 41 1 5.2511 -0.8681 5.3998 42 1 4.2918 -2.2953 4.9357 43 1 6.6028 -2.1028 7.7277 44 1 1.3576 -0.9061 6.9658 45 1 1.7504 -2.3196 5.9556 46 1 1.1694 1.5426 4.2053 47 1 0.8976 1.2816 5.9446 48 1 2.5537 1.2762 5.2920 49 1 -0.1103 -1.9498 4.3957 50 1 -0.6578 -0.6017 5.4214 51 1 -0.3880 -0.3433 3.6813 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724980611.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:03 Heat of formation + Delta-G solvation = -14.494188 kcal Electronic energy + Delta-G solvation = -31501.226057 eV Core-core repulsion = 27401.750762 eV Total energy + Delta-G solvation = -4099.475295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.17825 -40.15509 -38.84412 -37.70809 -34.71231 -33.41670 -32.60940 -32.37428 -31.41580 -30.40883 -29.71105 -26.99745 -26.02145 -25.65007 -24.77436 -23.96205 -23.17027 -22.04005 -20.83380 -20.25308 -18.80535 -18.57906 -17.41825 -17.06017 -16.74276 -16.35234 -16.04858 -15.76691 -14.82617 -14.80276 -14.65307 -14.42054 -14.15737 -14.11902 -13.81931 -13.65905 -13.63338 -13.30659 -13.11798 -12.82488 -12.71031 -12.53491 -12.37735 -11.97367 -11.83586 -11.60623 -11.52162 -11.48839 -11.06995 -10.95805 -10.71942 -10.63497 -10.49902 -10.24827 -10.17897 -10.04158 -9.93109 -9.84368 -9.74775 -9.47576 -8.78677 -8.74570 -8.41229 -6.75213 -5.86274 -3.21020 0.78149 0.88497 2.33961 2.55632 3.34642 3.40298 3.44316 3.46025 3.46675 4.12864 4.22052 4.37741 4.39300 4.47058 4.47644 4.57164 4.73471 4.85399 4.99041 5.08968 5.16512 5.16722 5.24945 5.33144 5.38305 5.51710 5.59814 5.67633 5.68938 5.74566 5.79989 5.86806 6.00675 6.03959 6.07421 6.19399 6.22219 6.33805 6.43408 6.45563 6.58972 6.73521 6.74208 6.81376 6.87958 6.92336 7.21301 7.46635 7.54295 7.62778 7.80728 8.21896 8.38195 9.13695 9.80357 10.38816 11.21634 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.002361 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.552045 B =11857.627178 C =12455.611448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.063 3.937 3 H 0.096 0.904 4 O -0.275 6.275 5 C 0.086 3.914 6 C -0.172 4.172 7 C -0.130 4.130 8 C 0.053 3.947 9 N -0.446 5.446 10 C 0.076 3.924 11 C 0.514 3.486 12 O -0.513 6.513 13 N -0.715 5.715 14 C 0.166 3.834 15 H 0.083 0.917 16 C -0.150 4.150 17 C 0.175 3.825 18 N -0.585 5.585 19 C -0.264 4.264 20 H 0.065 0.935 21 C 0.011 3.989 22 N -0.884 5.884 23 Si 0.887 3.113 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.159 3.841 28 C -0.089 4.089 29 C -0.131 4.131 30 C -0.137 4.137 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.395 0.605 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.023 0.977 43 H 0.254 0.746 44 H 0.059 0.941 45 H 0.020 0.980 46 H 0.032 0.968 47 H 0.051 0.949 48 H 0.076 0.924 49 H 0.052 0.948 50 H 0.055 0.945 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.038 9.491 -18.507 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.003 3.997 3 H 0.114 0.886 4 O -0.186 6.186 5 C 0.038 3.962 6 C -0.198 4.198 7 C -0.149 4.149 8 C -0.104 4.104 9 N -0.155 5.155 10 C -0.082 4.082 11 C 0.298 3.702 12 O -0.387 6.387 13 N -0.368 5.368 14 C 0.063 3.937 15 H 0.101 0.899 16 C -0.190 4.190 17 C 0.049 3.951 18 N -0.307 5.307 19 C -0.393 4.393 20 H 0.083 0.917 21 C -0.189 4.189 22 N -0.526 5.526 23 Si 0.716 3.284 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.032 3.968 28 C -0.091 4.091 29 C -0.189 4.189 30 C -0.195 4.195 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.230 0.770 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.047 8.028 -19.234 24.073 hybrid contribution -0.051 1.690 1.432 2.216 sum -12.098 9.718 -17.802 23.615 Atomic orbital electron populations 1.22318 0.92488 1.04704 1.03707 1.22325 0.95821 0.97115 0.84441 0.88622 1.86275 1.80367 1.36833 1.15104 1.20284 0.96608 0.91126 0.88230 1.21781 1.04114 0.93744 1.00180 1.22001 0.98894 1.01185 0.92868 1.22684 0.98068 0.90942 0.98687 1.67759 1.13271 1.07909 1.26598 1.22282 0.99336 1.01037 0.85589 1.19875 0.80585 0.85771 0.84009 1.90772 1.38929 1.22925 1.86123 1.46221 1.57688 1.27387 1.05508 1.21045 0.94033 0.96972 0.81674 0.89871 1.22612 0.94590 1.01554 1.00229 1.20641 0.94568 0.95929 0.83988 1.44056 1.00763 1.76000 1.09918 1.19009 0.97214 1.25482 0.97566 0.91725 1.24949 0.99837 0.95874 0.98265 1.70203 1.14068 1.20591 1.47773 0.86538 0.79544 0.81948 0.80351 1.21467 1.21551 1.20367 1.20906 0.87000 0.95419 0.93469 1.21370 0.93873 0.97297 0.96566 1.21797 1.03604 0.94050 0.99400 1.21809 0.95819 1.01162 1.00668 0.90915 0.90354 0.90025 0.84133 0.84436 0.82509 0.81710 0.77029 0.92798 0.91968 0.90669 0.95922 0.93598 0.92254 0.96255 0.94859 0.92992 0.90516 0.92853 0.92613 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 9.18 37.16 0.34 -0.93 16 2 C 0.06 0.64 2.65 -27.88 -0.07 0.56 16 3 H 0.10 0.74 6.18 -51.93 -0.32 0.42 16 4 O -0.28 -3.40 9.35 -39.30 -0.37 -3.77 16 5 C 0.09 0.91 6.60 -39.07 -0.26 0.65 16 6 C -0.17 -1.39 8.38 -39.13 -0.33 -1.72 16 7 C -0.13 -0.91 10.11 -39.47 -0.40 -1.31 16 8 C 0.05 0.43 11.18 -17.54 -0.20 0.24 16 9 N -0.45 -4.81 10.36 -13.13 -0.14 -4.95 16 10 C 0.08 0.83 11.14 -17.37 -0.19 0.64 16 11 C 0.51 7.14 7.14 -10.99 -0.08 7.06 16 12 O -0.51 -9.68 16.17 -14.30 -0.23 -9.91 16 13 N -0.72 -8.94 4.26 -53.77 -0.23 -9.17 16 14 C 0.17 2.66 1.57 -67.89 -0.11 2.56 16 15 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 16 C -0.15 -2.80 5.31 -26.61 -0.14 -2.94 16 17 C 0.18 4.06 5.43 -3.71 -0.02 4.04 16 18 N -0.59 -13.79 2.42 -172.32 -0.42 -14.21 16 19 C -0.26 -6.92 9.48 -15.06 -0.14 -7.06 16 20 H 0.07 1.67 7.98 -52.49 -0.42 1.25 16 21 C 0.01 0.31 4.56 -17.43 -0.08 0.23 16 22 N -0.88 -25.46 12.06 55.49 0.67 -24.79 16 23 Si 0.89 21.07 29.64 -169.99 -5.04 16.03 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.16 3.11 5.19 -3.71 -0.02 3.09 16 28 C -0.09 -1.34 0.56 -154.39 -0.09 -1.42 16 29 C -0.13 -1.85 7.83 37.16 0.29 -1.56 16 30 C -0.14 -1.67 8.31 37.16 0.31 -1.36 16 31 H 0.07 0.44 7.16 -51.93 -0.37 0.07 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.44 7.95 -51.93 -0.41 0.03 16 34 H 0.14 0.83 5.72 -52.49 -0.30 0.53 16 35 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 36 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.39 3.75 6.46 -40.82 -0.26 3.49 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.13 6.33 -51.93 -0.33 0.80 16 41 H 0.07 1.94 6.48 -51.93 -0.34 1.61 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.03 0.36 6.58 -51.93 -0.34 0.02 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 1.31 5.97 -51.93 -0.31 1.00 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.05 0.47 7.36 -51.93 -0.38 0.09 16 LS Contribution 399.33 15.07 6.02 6.02 Total: -1.00 -32.76 399.33 -8.87 -41.63 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.96 Total: 2.36 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.18 Total: 0.76 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.11 Total: -53.12 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.60 Total: -13.69 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.04 Total: 16.03 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.76 -8.87 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724980611.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.137 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds