Wall clock time and date at job start Wed Apr 1 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47357 * 2 1 4 4 O 1.42907 * 109.46647 * 240.00181 * 2 1 3 5 5 C 1.35906 * 116.99805 * 84.14953 * 4 2 1 6 6 C 1.39142 * 120.47603 * 358.94523 * 5 4 2 7 7 C 1.38541 * 118.37240 * 179.72150 * 6 5 4 8 8 C 1.38249 * 119.21952 * 0.57575 * 7 6 5 9 9 N 1.31848 * 120.89110 * 359.68836 * 8 7 6 10 10 C 1.31844 * 121.77820 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.47201 * 120.00370 * 2 1 3 12 12 O 1.21280 * 120.00212 * 114.99879 * 11 2 1 13 13 N 1.34777 * 119.99999 * 294.72150 * 11 2 1 14 14 C 1.46493 * 120.00271 * 179.97438 * 13 11 2 15 15 H 1.08998 * 109.45885 * 325.00417 * 14 13 11 16 16 C 1.53044 * 109.45784 * 84.97270 * 14 13 11 17 17 C 1.53197 * 109.31297 * 181.40050 * 16 14 13 18 18 N 1.46921 * 108.76366 * 305.34623 * 17 16 14 19 19 C 1.36943 * 120.63472 * 233.59294 * 18 17 16 20 20 H 1.07994 * 120.00330 * 151.51033 * 19 18 17 21 21 C 1.38814 * 119.99513 * 331.51169 * 19 18 17 22 22 N 1.31620 * 120.00225 * 331.18844 * 21 19 18 23 23 Si 1.86799 * 120.00016 * 151.18601 * 21 19 18 24 24 H 1.48493 * 109.46953 * 94.98960 * 23 21 19 25 25 H 1.48505 * 109.47206 * 214.99161 * 23 21 19 26 26 H 1.48498 * 109.47033 * 334.99226 * 23 21 19 27 27 C 1.46930 * 118.73997 * 53.61647 * 18 17 16 28 28 C 1.53039 * 109.46485 * 205.02942 * 14 13 11 29 29 C 1.53007 * 109.49580 * 298.56594 * 28 14 13 30 30 C 1.53001 * 109.49532 * 58.66325 * 28 14 13 31 31 H 1.09002 * 109.47192 * 60.00074 * 1 2 3 32 32 H 1.09004 * 109.47106 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46831 * 299.99605 * 1 2 3 34 34 H 1.08001 * 120.80955 * 359.97438 * 6 5 4 35 35 H 1.07996 * 120.38440 * 180.26341 * 7 6 5 36 36 H 1.08001 * 119.55323 * 179.70153 * 8 7 6 37 37 H 1.07997 * 119.65810 * 180.02562 * 10 9 8 38 38 H 0.97006 * 119.99696 * 0.02562 * 13 11 2 39 39 H 1.08998 * 109.49703 * 301.33610 * 16 14 13 40 40 H 1.09002 * 109.49435 * 61.43687 * 16 14 13 41 41 H 1.08994 * 109.58501 * 185.56543 * 17 16 14 42 42 H 1.09002 * 109.71283 * 65.20614 * 17 16 14 43 43 H 0.96992 * 120.00444 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.58840 * 186.60513 * 27 18 17 45 45 H 1.09001 * 109.70545 * 66.24887 * 27 18 17 46 46 H 1.09000 * 109.46876 * 60.00037 * 29 28 14 47 47 H 1.08997 * 109.46614 * 179.97438 * 29 28 14 48 48 H 1.08995 * 109.47069 * 299.99885 * 29 28 14 49 49 H 1.08996 * 109.47099 * 60.00288 * 30 28 14 50 50 H 1.09000 * 109.47030 * 180.02562 * 30 28 14 51 51 H 1.09004 * 109.47118 * 299.99719 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0955 0.0582 -2.3086 6 6 1.7128 1.3959 -2.3210 7 6 1.8274 2.1025 -3.5072 8 6 2.3030 1.4574 -4.6337 9 7 2.6521 0.1867 -4.5895 10 6 2.5637 -0.5194 -3.4796 11 6 2.0324 -0.7105 1.2304 12 8 2.6530 -1.7467 1.1214 13 7 1.7968 -0.1914 2.4517 14 6 2.2846 -0.8823 3.6478 15 1 2.2324 -1.9597 3.4915 16 6 3.7356 -0.4756 3.9153 17 6 4.2535 -1.2265 5.1462 18 7 3.3404 -0.9781 6.2701 19 6 3.8156 -0.5032 7.4634 20 1 3.1792 0.0952 8.0984 21 6 5.1154 -0.7909 7.8567 22 7 5.6944 -1.9019 7.4532 23 14 6.0429 0.3987 8.9585 24 1 5.8978 -0.0229 10.3749 25 1 7.4807 0.3993 8.5869 26 1 5.4873 1.7655 8.7896 27 6 1.9077 -1.2494 6.0897 28 6 1.4162 -0.4986 4.8482 29 6 1.5166 1.0089 5.0900 30 6 -0.0396 -0.8756 4.5664 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.3395 1.8728 -1.4268 35 1 1.5437 3.1435 -3.5525 36 1 2.3900 2.0017 -5.5624 37 1 2.8595 -1.5580 -3.4820 38 1 1.3035 0.6394 2.5387 39 1 4.3494 -0.7279 3.0507 40 1 3.7849 0.5981 4.0965 41 1 5.2511 -0.8681 5.3998 42 1 4.2918 -2.2953 4.9357 43 1 6.6028 -2.1028 7.7277 44 1 1.3576 -0.9061 6.9658 45 1 1.7504 -2.3196 5.9556 46 1 1.1694 1.5426 4.2053 47 1 0.8976 1.2816 5.9446 48 1 2.5537 1.2762 5.2920 49 1 -0.1103 -1.9498 4.3957 50 1 -0.6578 -0.6017 5.4214 51 1 -0.3880 -0.3433 3.6813 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724980611.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:02 Heat of formation + Delta-G solvation = -35.144756 kcal Electronic energy + Delta-G solvation = -31502.121533 eV Core-core repulsion = 27401.750762 eV Total energy + Delta-G solvation = -4100.370771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.99355 -41.24763 -39.92517 -38.80045 -36.35443 -34.71941 -33.46875 -33.22064 -33.05842 -31.51470 -30.86831 -28.11472 -27.51053 -27.05387 -25.78705 -24.76566 -24.19718 -23.29754 -22.52936 -21.38108 -19.78806 -19.51019 -18.83946 -18.28656 -17.72766 -17.31330 -17.08198 -16.77520 -16.57022 -15.90372 -15.75749 -15.59523 -15.37866 -15.29415 -14.92628 -14.88065 -14.73255 -14.47865 -14.21593 -13.94955 -13.87027 -13.35874 -13.30218 -13.14226 -13.05238 -12.80099 -12.68795 -12.65784 -12.55514 -12.35082 -12.30572 -12.22790 -12.10682 -11.99089 -11.60875 -11.36955 -11.19453 -10.89365 -10.70433 -10.57241 -10.49311 -10.05333 -9.46221 -8.74101 -7.91646 -5.29284 0.15133 0.24717 1.44157 1.46124 1.48737 1.50063 1.58368 2.47902 2.51461 2.80393 3.20753 3.42399 3.57145 3.60362 3.65291 3.70361 3.76978 3.81330 3.92709 3.96760 4.06111 4.15795 4.32992 4.36058 4.44052 4.59614 4.61230 4.65120 4.65544 4.78114 4.82660 4.85069 4.93997 4.99486 5.03065 5.05975 5.08636 5.12995 5.15951 5.22176 5.28082 5.31954 5.42260 5.45913 5.51205 5.51546 5.68858 5.74855 6.14697 6.35417 6.51275 6.97443 7.10302 7.18238 7.83363 8.38803 9.14766 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.002361 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.552045 B =11857.627178 C =12455.611448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 H 0.129 0.871 4 O -0.307 6.307 5 C 0.068 3.932 6 C -0.167 4.167 7 C -0.119 4.119 8 C 0.045 3.955 9 N -0.474 5.474 10 C 0.049 3.951 11 C 0.511 3.489 12 O -0.573 6.573 13 N -0.695 5.695 14 C 0.178 3.822 15 H 0.051 0.949 16 C -0.134 4.134 17 C 0.184 3.816 18 N -0.598 5.598 19 C -0.262 4.262 20 H 0.072 0.928 21 C -0.046 4.046 22 N -0.928 5.928 23 Si 0.954 3.046 24 H -0.287 1.287 25 H -0.298 1.298 26 H -0.264 1.264 27 C 0.153 3.847 28 C -0.076 4.076 29 C -0.127 4.127 30 C -0.131 4.131 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.155 0.845 38 H 0.416 0.584 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.042 0.958 42 H -0.014 1.014 43 H 0.249 0.751 44 H 0.064 0.936 45 H 0.001 0.999 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.045 0.955 49 H 0.042 0.958 50 H 0.070 0.930 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.127 13.944 -19.499 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 H 0.146 0.854 4 O -0.219 6.219 5 C 0.021 3.979 6 C -0.193 4.193 7 C -0.138 4.138 8 C -0.112 4.112 9 N -0.184 5.184 10 C -0.109 4.109 11 C 0.297 3.703 12 O -0.451 6.451 13 N -0.349 5.349 14 C 0.073 3.927 15 H 0.069 0.931 16 C -0.174 4.174 17 C 0.058 3.942 18 N -0.320 5.320 19 C -0.392 4.392 20 H 0.089 0.911 21 C -0.242 4.242 22 N -0.573 5.573 23 Si 0.782 3.218 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.189 1.189 27 C 0.027 3.973 28 C -0.078 4.078 29 C -0.184 4.184 30 C -0.189 4.189 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.188 0.812 35 H 0.194 0.806 36 H 0.201 0.799 37 H 0.172 0.828 38 H 0.255 0.745 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.004 0.996 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.019 0.981 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.089 0.911 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.201 12.529 -20.232 28.238 hybrid contribution 0.882 0.286 1.684 1.923 sum -14.319 12.815 -18.548 26.707 Atomic orbital electron populations 1.22355 0.89848 1.04377 1.06067 1.22429 0.97555 0.97348 0.81825 0.85409 1.86228 1.81205 1.38393 1.16114 1.20349 0.97841 0.92351 0.87396 1.22138 1.02979 0.92440 1.01746 1.22428 0.97004 1.02724 0.91669 1.23277 0.97158 0.90237 1.00507 1.67739 1.14438 1.09447 1.26746 1.22245 1.00922 1.01181 0.86513 1.20690 0.79250 0.85056 0.85290 1.90759 1.41571 1.25748 1.86996 1.45846 1.57258 1.27732 1.04083 1.20601 0.92711 0.95614 0.83783 0.93065 1.22356 0.96335 1.01418 0.97258 1.20366 0.93586 0.94216 0.86073 1.44251 1.02397 1.76066 1.09300 1.19376 0.97352 1.24425 0.98003 0.91079 1.25726 1.00908 0.97143 1.00462 1.70335 1.14022 1.22612 1.50310 0.85490 0.77635 0.80333 0.78389 1.21367 1.22421 1.18878 1.21113 0.84809 0.95220 0.96181 1.21179 0.95422 0.97824 0.93370 1.21749 1.02048 0.92793 1.01823 1.21776 0.93308 1.01008 1.02794 0.88979 0.92112 0.87129 0.81244 0.80553 0.79943 0.82794 0.74465 0.93894 0.90599 0.93978 0.99594 0.94233 0.91767 0.98055 0.90619 0.92148 0.93582 0.93928 0.91125 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.18 71.98 0.66 -1.12 16 2 C 0.07 1.18 2.65 29.85 0.08 1.26 16 3 H 0.13 1.37 6.18 -2.39 -0.01 1.36 16 4 O -0.31 -7.44 9.35 -73.50 -0.69 -8.13 16 5 C 0.07 1.37 6.60 22.60 0.15 1.52 16 6 C -0.17 -2.09 8.38 22.56 0.19 -1.90 16 7 C -0.12 -1.17 10.11 22.34 0.23 -0.95 16 8 C 0.05 0.63 11.18 84.69 0.95 1.58 16 9 N -0.47 -10.04 10.36 -195.44 -2.02 -12.06 16 10 C 0.05 1.10 11.14 84.80 0.94 2.04 16 11 C 0.51 13.56 7.14 87.66 0.63 14.19 16 12 O -0.57 -22.34 16.17 15.96 0.26 -22.08 16 13 N -0.70 -15.60 4.26 -442.42 -1.88 -17.48 16 14 C 0.18 5.63 1.57 45.02 0.07 5.70 16 15 H 0.05 1.99 7.58 -2.39 -0.02 1.98 16 16 C -0.13 -5.11 5.31 30.67 0.16 -4.95 16 17 C 0.18 9.08 5.43 86.36 0.47 9.55 16 18 N -0.60 -29.01 2.42 -699.10 -1.69 -30.70 16 19 C -0.26 -13.94 9.48 84.03 0.80 -13.14 16 20 H 0.07 3.64 7.98 -2.91 -0.02 3.62 16 21 C -0.05 -2.55 4.56 84.86 0.39 -2.16 16 22 N -0.93 -56.10 12.06 21.65 0.26 -55.83 16 23 Si 0.95 44.26 29.64 68.60 2.03 46.29 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 27 C 0.15 5.99 5.19 86.36 0.45 6.44 16 28 C -0.08 -2.15 0.56 -52.10 -0.03 -2.17 16 29 C -0.13 -3.12 7.83 71.98 0.56 -2.55 16 30 C -0.13 -2.75 8.31 71.98 0.60 -2.16 16 31 H 0.09 0.66 7.16 -2.39 -0.02 0.65 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.11 0.51 7.95 -2.38 -0.02 0.49 16 34 H 0.17 1.02 5.72 -2.91 -0.02 1.00 16 35 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.42 5.76 6.46 -92.70 -0.60 5.16 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.71 6.33 -2.39 -0.02 2.69 16 41 H 0.04 2.32 6.48 -2.39 -0.02 2.30 16 42 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 43 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 44 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 45 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.08 1.21 6.58 -2.39 -0.02 1.20 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.05 1.45 5.97 -2.39 -0.01 1.43 16 49 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.08 1.17 7.36 -2.39 -0.02 1.16 16 Total: -1.00 -79.42 399.33 3.89 -75.53 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.34 Total: 13.29 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 7.29 Total: 11.18 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -5.34 Total: -116.08 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.43 Total: -30.21 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -79.42 3.89 -75.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724980611.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.385 kcal (2) G-P(sol) polarization free energy of solvation -79.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds