Wall clock time and date at job start Wed Apr 1 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21285 * 120.00248 * 2 1 4 4 N 1.34776 * 119.99909 * 179.97438 * 2 1 3 5 5 C 1.46511 * 119.99992 * 180.02562 * 4 2 1 6 6 H 1.08990 * 109.46955 * 325.00127 * 5 4 2 7 7 C 1.53002 * 109.46753 * 84.99886 * 5 4 2 8 8 C 1.50700 * 109.46660 * 204.99927 * 5 4 2 9 9 O 1.21279 * 120.00619 * 345.34799 * 8 5 4 10 10 N 1.34783 * 119.99327 * 165.35503 * 8 5 4 11 11 C 1.46500 * 120.00064 * 6.61717 * 10 8 5 12 12 C 1.53002 * 109.46905 * 96.59949 * 11 10 8 13 13 C 1.52998 * 109.47072 * 185.85985 * 12 11 10 14 14 N 1.46498 * 109.47113 * 179.97438 * 13 12 11 15 15 C 1.36940 * 119.99804 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00143 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99789 * 180.02562 * 15 14 13 18 18 N 1.31613 * 120.00002 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00080 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47062 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47686 * 119.99421 * 19 17 15 22 22 H 1.48503 * 109.46909 * 239.99973 * 19 17 15 23 23 C 1.46500 * 119.99456 * 186.62657 * 10 8 5 24 24 C 1.50699 * 109.47617 * 86.72543 * 23 10 8 25 25 C 1.38238 * 119.99206 * 273.60641 * 24 23 10 26 26 C 1.38238 * 119.99442 * 179.76547 * 25 24 23 27 27 C 1.38236 * 120.00230 * 0.48392 * 26 25 24 28 28 C 1.38240 * 119.99819 * 359.79413 * 27 26 25 29 29 C 1.38223 * 120.00213 * 93.87843 * 24 23 10 30 30 H 1.08995 * 109.47335 * 240.00029 * 1 2 3 31 31 H 1.09004 * 109.47203 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46931 * 119.99726 * 1 2 3 33 33 H 0.97001 * 120.00413 * 0.02562 * 4 2 1 34 34 H 1.08997 * 109.46816 * 189.16695 * 7 5 4 35 35 H 1.08994 * 109.47257 * 309.16690 * 7 5 4 36 36 H 1.09007 * 109.46655 * 69.17109 * 7 5 4 37 37 H 1.09000 * 109.46741 * 216.59418 * 11 10 8 38 38 H 1.08998 * 109.47292 * 336.59630 * 11 10 8 39 39 H 1.08997 * 109.46771 * 305.85714 * 12 11 10 40 40 H 1.08998 * 109.46858 * 65.86195 * 12 11 10 41 41 H 1.09004 * 109.47106 * 300.00415 * 13 12 11 42 42 H 1.09000 * 109.47304 * 59.99612 * 13 12 11 43 43 H 0.96995 * 119.99799 * 359.97438 * 14 13 12 44 44 H 0.97010 * 120.00130 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.46390 * 206.72267 * 23 10 8 46 46 H 1.08999 * 109.47284 * 326.71849 * 23 10 8 47 47 H 1.07999 * 120.00270 * 359.97438 * 25 24 23 48 48 H 1.08001 * 120.00085 * 180.25595 * 26 25 24 49 49 H 1.07991 * 120.00481 * 179.76664 * 27 26 25 50 50 H 1.07993 * 120.00342 * 179.97438 * 28 27 26 51 51 H 1.07994 * 120.00500 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0094 -0.3256 -0.5883 7 6 4.1553 -1.0412 1.4383 8 6 4.1483 -2.4551 -0.5989 9 8 3.3925 -3.3926 -0.7430 10 7 5.4379 -2.5651 -0.9753 11 6 6.3843 -1.4893 -0.6702 12 6 7.1463 -1.8289 0.6124 13 6 8.0275 -0.6435 1.0112 14 7 8.7566 -0.9684 2.2396 15 6 9.6136 -0.0528 2.7897 16 1 9.7516 0.9090 2.3181 17 6 10.3048 -0.3609 3.9533 18 7 10.1362 -1.5328 4.5282 19 14 11.4733 0.8882 4.7041 20 1 11.4839 2.1184 3.8723 21 1 11.0229 1.2237 6.0788 22 1 12.8424 0.3155 4.7576 23 6 5.8929 -3.7605 -1.6896 24 6 5.6659 -3.5790 -3.1683 25 6 4.4438 -3.9068 -3.7252 26 6 4.2339 -3.7357 -5.0808 27 6 5.2493 -3.2464 -5.8811 28 6 6.4732 -2.9241 -5.3251 29 6 6.6813 -3.0902 -3.9686 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6959 -2.0073 0.0005 34 1 5.2329 -0.8777 1.4288 35 1 3.6643 -0.1987 1.9252 36 1 3.9316 -1.9575 1.9847 37 1 7.0898 -1.3815 -1.4941 38 1 5.8403 -0.5548 -0.5330 39 1 6.4360 -2.0388 1.4121 40 1 7.7715 -2.7054 0.4423 41 1 8.7377 -0.4334 0.2114 42 1 7.4023 0.2331 1.1812 43 1 8.6323 -1.8320 2.6633 44 1 10.6190 -1.7480 5.3417 45 1 6.9556 -3.9136 -1.5013 46 1 5.3332 -4.6279 -1.3398 47 1 3.6520 -4.2932 -3.1006 48 1 3.2778 -3.9879 -5.5152 49 1 5.0866 -3.1164 -6.9408 50 1 7.2666 -2.5422 -5.9504 51 1 7.6376 -2.8386 -3.5344 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725427459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:00 Heat of formation + Delta-G solvation = -36.564057 kcal Electronic energy + Delta-G solvation = -30894.408639 eV Core-core repulsion = 26793.976323 eV Total energy + Delta-G solvation = -4100.432317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87153 -39.63308 -38.91947 -36.68123 -35.28265 -34.79068 -32.83283 -31.81816 -31.22302 -31.06955 -29.56620 -29.04157 -26.81503 -25.45567 -24.01450 -22.99411 -22.60624 -21.71299 -21.10887 -20.62983 -19.36362 -17.78934 -17.26741 -17.04358 -16.87049 -16.29751 -15.95202 -15.53424 -15.42496 -15.12056 -14.89829 -14.78811 -14.57186 -14.02447 -13.71868 -13.60488 -13.43943 -13.31834 -13.11408 -12.91863 -12.74882 -12.72685 -12.40223 -12.31634 -12.21639 -12.09791 -11.96564 -11.70826 -11.40951 -11.14402 -10.97170 -10.89839 -10.74105 -10.53490 -10.08602 -10.06551 -10.01919 -9.76073 -9.34550 -9.09817 -8.99281 -8.90645 -8.82721 -6.95629 -5.78854 -3.08005 1.07324 1.22669 2.32712 2.46790 2.61789 3.17298 3.42482 3.48418 3.50463 3.67929 4.16034 4.56909 4.58735 4.60516 4.66368 4.81527 4.83794 4.94519 4.96350 5.00049 5.03518 5.07082 5.12777 5.17681 5.30128 5.43788 5.46384 5.52446 5.53476 5.54575 5.63445 5.70277 5.79295 5.80470 5.83942 5.88552 6.09644 6.16450 6.22582 6.26623 6.29913 6.31108 6.32451 6.43048 6.76494 6.77345 6.81069 7.14343 7.31111 7.68860 7.87751 8.03419 8.39737 9.51220 10.08050 10.42222 11.43991 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.002992 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.620810 B = 9355.961361 C =11971.255437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.545 6.545 4 N -0.716 5.716 5 C 0.125 3.875 6 H 0.111 0.889 7 C -0.172 4.172 8 C 0.520 3.480 9 O -0.541 6.541 10 N -0.597 5.597 11 C 0.103 3.897 12 C -0.150 4.150 13 C 0.155 3.845 14 N -0.733 5.733 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.153 3.847 24 C -0.106 4.106 25 C -0.098 4.098 26 C -0.126 4.126 27 C -0.119 4.119 28 C -0.124 4.124 29 C -0.104 4.104 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.409 0.591 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.127 0.873 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.122 0.878 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.300 -4.761 -18.401 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.422 6.422 4 N -0.370 5.370 5 C 0.017 3.983 6 H 0.129 0.871 7 C -0.230 4.230 8 C 0.308 3.692 9 O -0.419 6.419 10 N -0.328 5.328 11 C -0.020 4.020 12 C -0.189 4.189 13 C 0.026 3.974 14 N -0.377 5.377 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.031 3.969 24 C -0.107 4.107 25 C -0.116 4.116 26 C -0.144 4.144 27 C -0.137 4.137 28 C -0.142 4.142 29 C -0.123 4.123 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.246 0.754 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.145 0.855 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.140 0.860 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.163 -4.347 -18.444 25.567 hybrid contribution 0.531 -0.040 0.561 0.774 sum -16.632 -4.387 -17.883 24.813 Atomic orbital electron populations 1.21899 0.91333 1.05564 1.04383 1.20832 0.90706 0.83202 0.75372 1.90749 1.70762 1.31314 1.49331 1.45876 1.05864 1.09688 1.75593 1.20795 0.81841 0.96566 0.99105 0.87128 1.22438 1.03875 1.03307 0.93420 1.20561 0.82071 0.89307 0.77293 1.90633 1.55591 1.39860 1.55772 1.47904 1.08620 1.20363 1.55937 1.21838 0.92221 0.89449 0.98479 1.22318 0.99456 1.00688 0.96421 1.20563 0.92881 0.93876 0.90031 1.42335 1.50901 1.18368 1.26089 1.19270 1.16512 0.96139 1.05161 0.91069 1.24745 1.00801 0.97126 0.98304 1.69669 1.45995 1.21158 1.21345 0.86121 0.80633 0.80457 0.79015 1.20498 1.21840 1.21872 1.20386 1.01324 0.88268 0.86927 1.20244 0.94415 1.00188 0.95849 1.21237 0.96810 0.98558 0.95018 1.21166 0.99083 1.00146 0.93995 1.21176 0.93616 0.99173 0.99734 1.21150 0.97392 1.00497 0.95193 1.21138 0.98887 0.98483 0.93772 0.89246 0.88845 0.89382 0.75396 0.88846 0.90767 0.91783 0.89926 0.89585 0.90783 0.91277 0.96175 0.96126 0.78284 0.93549 0.88946 0.88870 0.85466 0.86266 0.86293 0.86045 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.32 36.00 0.37 -0.79 16 2 C 0.51 5.75 7.90 -10.99 -0.09 5.66 16 3 O -0.54 -8.44 16.75 5.55 0.09 -8.35 16 4 N -0.72 -7.62 5.02 -54.93 -0.28 -7.90 16 5 C 0.13 1.49 2.14 -69.08 -0.15 1.34 16 6 H 0.11 1.39 6.33 -51.93 -0.33 1.07 16 7 C -0.17 -2.15 8.77 37.16 0.33 -1.82 16 8 C 0.52 6.40 6.95 -10.98 -0.08 6.33 16 9 O -0.54 -7.43 14.67 5.56 0.08 -7.35 16 10 N -0.60 -6.72 2.47 -175.06 -0.43 -7.15 16 11 C 0.10 1.16 4.88 -4.04 -0.02 1.14 16 12 C -0.15 -2.13 4.77 -26.73 -0.13 -2.26 16 13 C 0.15 2.86 6.26 -4.04 -0.03 2.84 16 14 N -0.73 -18.00 5.60 -59.91 -0.34 -18.33 16 15 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 19 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C 0.15 1.60 5.58 -5.19 -0.03 1.57 16 24 C -0.11 -1.11 5.44 -104.63 -0.57 -1.68 16 25 C -0.10 -1.05 9.68 -39.58 -0.38 -1.43 16 26 C -0.13 -1.20 10.05 -39.58 -0.40 -1.59 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 28 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 29 C -0.10 -1.01 9.69 -39.59 -0.38 -1.40 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.41 3.81 7.72 -40.82 -0.31 3.50 16 34 H 0.09 1.23 4.04 -51.93 -0.21 1.02 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.79 8.12 -51.92 -0.42 0.37 16 37 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.09 0.95 5.35 -51.93 -0.28 0.67 16 39 H 0.07 1.10 5.99 -51.93 -0.31 0.79 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.38 9.94 7.67 -40.82 -0.31 9.63 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.09 0.86 7.96 -51.93 -0.41 0.45 16 46 H 0.09 1.03 7.41 -51.93 -0.38 0.65 16 47 H 0.13 1.43 7.29 -52.49 -0.38 1.05 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 51 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 417.75 15.07 6.30 6.30 Total: -1.00 -34.14 417.75 -9.44 -43.57 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -7.97 Total: 11.54 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.59 Total: -2.32 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.32 Total: -60.65 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.17 Total: -15.70 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.14 -9.44 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725427459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.009 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds