Wall clock time and date at job start Wed Apr 1 2020 05:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21285 * 120.00248 * 2 1 4 4 N 1.34776 * 119.99909 * 179.97438 * 2 1 3 5 5 C 1.46511 * 119.99992 * 180.02562 * 4 2 1 6 6 H 1.08990 * 109.46955 * 325.00127 * 5 4 2 7 7 C 1.53002 * 109.46753 * 84.99886 * 5 4 2 8 8 C 1.50700 * 109.46660 * 204.99927 * 5 4 2 9 9 O 1.21279 * 120.00619 * 345.34799 * 8 5 4 10 10 N 1.34783 * 119.99327 * 165.35503 * 8 5 4 11 11 C 1.46500 * 120.00064 * 6.61717 * 10 8 5 12 12 C 1.53002 * 109.46905 * 96.59949 * 11 10 8 13 13 C 1.52998 * 109.47072 * 185.85985 * 12 11 10 14 14 N 1.46498 * 109.47113 * 179.97438 * 13 12 11 15 15 C 1.36940 * 119.99804 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00143 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99789 * 180.02562 * 15 14 13 18 18 N 1.31613 * 120.00002 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00080 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47062 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47686 * 119.99421 * 19 17 15 22 22 H 1.48503 * 109.46909 * 239.99973 * 19 17 15 23 23 C 1.46500 * 119.99456 * 186.62657 * 10 8 5 24 24 C 1.50699 * 109.47617 * 86.72543 * 23 10 8 25 25 C 1.38238 * 119.99206 * 273.60641 * 24 23 10 26 26 C 1.38238 * 119.99442 * 179.76547 * 25 24 23 27 27 C 1.38236 * 120.00230 * 0.48392 * 26 25 24 28 28 C 1.38240 * 119.99819 * 359.79413 * 27 26 25 29 29 C 1.38223 * 120.00213 * 93.87843 * 24 23 10 30 30 H 1.08995 * 109.47335 * 240.00029 * 1 2 3 31 31 H 1.09004 * 109.47203 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46931 * 119.99726 * 1 2 3 33 33 H 0.97001 * 120.00413 * 0.02562 * 4 2 1 34 34 H 1.08997 * 109.46816 * 189.16695 * 7 5 4 35 35 H 1.08994 * 109.47257 * 309.16690 * 7 5 4 36 36 H 1.09007 * 109.46655 * 69.17109 * 7 5 4 37 37 H 1.09000 * 109.46741 * 216.59418 * 11 10 8 38 38 H 1.08998 * 109.47292 * 336.59630 * 11 10 8 39 39 H 1.08997 * 109.46771 * 305.85714 * 12 11 10 40 40 H 1.08998 * 109.46858 * 65.86195 * 12 11 10 41 41 H 1.09004 * 109.47106 * 300.00415 * 13 12 11 42 42 H 1.09000 * 109.47304 * 59.99612 * 13 12 11 43 43 H 0.96995 * 119.99799 * 359.97438 * 14 13 12 44 44 H 0.97010 * 120.00130 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.46390 * 206.72267 * 23 10 8 46 46 H 1.08999 * 109.47284 * 326.71849 * 23 10 8 47 47 H 1.07999 * 120.00270 * 359.97438 * 25 24 23 48 48 H 1.08001 * 120.00085 * 180.25595 * 26 25 24 49 49 H 1.07991 * 120.00481 * 179.76664 * 27 26 25 50 50 H 1.07993 * 120.00342 * 179.97438 * 28 27 26 51 51 H 1.07994 * 120.00500 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0094 -0.3256 -0.5883 7 6 4.1553 -1.0412 1.4383 8 6 4.1483 -2.4551 -0.5989 9 8 3.3925 -3.3926 -0.7430 10 7 5.4379 -2.5651 -0.9753 11 6 6.3843 -1.4893 -0.6702 12 6 7.1463 -1.8289 0.6124 13 6 8.0275 -0.6435 1.0112 14 7 8.7566 -0.9684 2.2396 15 6 9.6136 -0.0528 2.7897 16 1 9.7516 0.9090 2.3181 17 6 10.3048 -0.3609 3.9533 18 7 10.1362 -1.5328 4.5282 19 14 11.4733 0.8882 4.7041 20 1 11.4839 2.1184 3.8723 21 1 11.0229 1.2237 6.0788 22 1 12.8424 0.3155 4.7576 23 6 5.8929 -3.7605 -1.6896 24 6 5.6659 -3.5790 -3.1683 25 6 4.4438 -3.9068 -3.7252 26 6 4.2339 -3.7357 -5.0808 27 6 5.2493 -3.2464 -5.8811 28 6 6.4732 -2.9241 -5.3251 29 6 6.6813 -3.0902 -3.9686 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3634 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6959 -2.0073 0.0005 34 1 5.2329 -0.8777 1.4288 35 1 3.6643 -0.1987 1.9252 36 1 3.9316 -1.9575 1.9847 37 1 7.0898 -1.3815 -1.4941 38 1 5.8403 -0.5548 -0.5330 39 1 6.4360 -2.0388 1.4121 40 1 7.7715 -2.7054 0.4423 41 1 8.7377 -0.4334 0.2114 42 1 7.4023 0.2331 1.1812 43 1 8.6323 -1.8320 2.6633 44 1 10.6190 -1.7480 5.3417 45 1 6.9556 -3.9136 -1.5013 46 1 5.3332 -4.6279 -1.3398 47 1 3.6520 -4.2932 -3.1006 48 1 3.2778 -3.9879 -5.5152 49 1 5.0866 -3.1164 -6.9408 50 1 7.2666 -2.5422 -5.9504 51 1 7.6376 -2.8386 -3.5344 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725427459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:58 Heat of formation + Delta-G solvation = -58.106018 kcal Electronic energy + Delta-G solvation = -30895.342769 eV Core-core repulsion = 26793.976323 eV Total energy + Delta-G solvation = -4101.366446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.82774 -40.49872 -39.74490 -37.85737 -36.48939 -36.13745 -34.15310 -33.12625 -32.13043 -31.78261 -31.10280 -29.78941 -27.72435 -26.98438 -25.05462 -24.52182 -23.41381 -22.54706 -22.46226 -21.53366 -20.31154 -19.12332 -18.70672 -18.14999 -17.65494 -17.23422 -16.90882 -16.60502 -16.40843 -16.25161 -15.98948 -15.87214 -15.63121 -15.32764 -15.15561 -14.77404 -14.62856 -14.29313 -14.13694 -13.80406 -13.57194 -13.50930 -13.47314 -13.41557 -13.26531 -12.97659 -12.91603 -12.82027 -12.80028 -12.71000 -12.25509 -12.12068 -11.96618 -11.85784 -11.80598 -11.76873 -11.06113 -11.00982 -10.92258 -10.29913 -9.85703 -9.81984 -9.68889 -8.98093 -7.94299 -5.22636 0.33636 0.50259 1.34529 1.48653 1.49105 1.57909 1.59152 1.72178 2.31225 2.57294 2.93472 3.18740 3.40285 3.76493 3.78506 3.87606 3.91804 3.96135 4.00290 4.04306 4.15978 4.27051 4.29824 4.32754 4.49910 4.53351 4.55861 4.56977 4.60113 4.65450 4.66141 4.70562 4.73548 4.76807 4.88940 5.06049 5.06494 5.09549 5.15987 5.23699 5.27267 5.42245 5.45440 5.52821 5.56720 5.61950 5.67674 6.10941 6.18202 6.28644 6.47284 6.90110 7.17256 7.35038 8.11606 8.33139 9.29428 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.002992 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.620810 B = 9355.961361 C =11971.255437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.507 3.493 3 O -0.593 6.593 4 N -0.710 5.710 5 C 0.128 3.872 6 H 0.105 0.895 7 C -0.164 4.164 8 C 0.520 3.480 9 O -0.556 6.556 10 N -0.592 5.592 11 C 0.112 3.888 12 C -0.134 4.134 13 C 0.153 3.847 14 N -0.747 5.747 15 C -0.242 4.242 16 H 0.077 0.923 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.293 1.293 23 C 0.153 3.847 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.122 4.122 28 C -0.129 4.129 29 C -0.112 4.112 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.417 0.583 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.023 0.977 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.115 0.885 48 H 0.134 0.866 49 H 0.142 0.858 50 H 0.142 0.858 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.753 -4.288 -20.185 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.296 3.704 3 O -0.474 6.474 4 N -0.364 5.364 5 C 0.019 3.981 6 H 0.122 0.878 7 C -0.222 4.222 8 C 0.308 3.692 9 O -0.434 6.434 10 N -0.322 5.322 11 C -0.011 4.011 12 C -0.173 4.173 13 C 0.026 3.974 14 N -0.390 5.390 15 C -0.373 4.373 16 H 0.095 0.905 17 C -0.268 4.268 18 N -0.621 5.621 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.221 1.221 23 C 0.031 3.969 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.151 4.151 27 C -0.140 4.140 28 C -0.147 4.147 29 C -0.131 4.131 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.255 0.745 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.041 0.959 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.123 0.877 46 H 0.102 0.898 47 H 0.133 0.867 48 H 0.152 0.848 49 H 0.160 0.840 50 H 0.159 0.841 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.643 -3.879 -20.275 27.155 hybrid contribution 0.623 -0.210 1.025 1.218 sum -17.019 -4.089 -19.250 26.018 Atomic orbital electron populations 1.21928 0.87567 1.06328 1.06484 1.21680 0.92473 0.82331 0.73913 1.90725 1.72068 1.32885 1.51678 1.45891 1.05354 1.10154 1.75012 1.20685 0.82811 0.96157 0.98425 0.87753 1.22329 1.03223 1.02802 0.93850 1.20607 0.82328 0.89125 0.77147 1.90627 1.56042 1.40339 1.56437 1.47884 1.08214 1.20612 1.55536 1.21730 0.92351 0.89471 0.97539 1.22121 0.98726 0.98838 0.97578 1.20731 0.93109 0.95648 0.87928 1.42573 1.51102 1.17502 1.27787 1.19673 1.16085 0.96634 1.04951 0.90520 1.25539 1.03039 0.98993 0.99266 1.69815 1.47418 1.23038 1.21785 0.85115 0.78263 0.78754 0.77907 1.18958 1.22245 1.22056 1.20443 1.01795 0.87460 0.87153 1.20243 0.94756 1.00970 0.95697 1.21256 0.96794 0.99511 0.95676 1.21404 1.00119 0.99979 0.93626 1.21497 0.93294 0.98322 1.00888 1.21469 0.98073 0.99963 0.95209 1.21333 0.99125 0.98392 0.94212 0.87071 0.88799 0.87115 0.74461 0.89612 0.91717 0.91800 0.87969 0.89183 0.91637 0.91314 0.95254 0.95875 0.79500 0.94079 0.87716 0.89821 0.86684 0.84801 0.84044 0.84051 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.32 71.23 0.74 -1.16 16 2 C 0.51 11.05 7.90 87.66 0.69 11.75 16 3 O -0.59 -18.53 16.75 -3.04 -0.05 -18.58 16 4 N -0.71 -14.70 5.02 -446.09 -2.24 -16.94 16 5 C 0.13 3.02 2.14 44.24 0.09 3.11 16 6 H 0.10 2.62 6.33 -2.39 -0.02 2.61 16 7 C -0.16 -4.12 8.77 71.98 0.63 -3.48 16 8 C 0.52 12.58 6.95 87.66 0.61 13.19 16 9 O -0.56 -15.09 14.67 -3.03 -0.04 -15.14 16 10 N -0.59 -12.83 2.47 -826.14 -2.04 -14.87 16 11 C 0.11 2.37 4.88 86.38 0.42 2.79 16 12 C -0.13 -3.69 4.77 30.59 0.15 -3.55 16 13 C 0.15 5.52 6.26 86.38 0.54 6.06 16 14 N -0.75 -36.70 5.60 -343.45 -1.92 -38.62 16 15 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 18 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 19 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 C 0.15 3.09 5.58 85.63 0.48 3.57 16 24 C -0.12 -2.31 5.44 -19.87 -0.11 -2.42 16 25 C -0.11 -2.37 9.68 22.27 0.22 -2.16 16 26 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 27 C -0.12 -1.90 10.05 22.27 0.22 -1.67 16 28 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 29 C -0.11 -1.97 9.69 22.27 0.22 -1.76 16 30 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 1.12 8.12 -2.38 -0.02 1.10 16 32 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.42 7.36 7.72 -92.71 -0.72 6.65 16 34 H 0.09 2.27 4.04 -2.39 -0.01 2.27 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.58 8.12 -2.38 -0.02 1.56 16 37 H 0.10 1.82 8.12 -2.39 -0.02 1.80 16 38 H 0.09 1.88 5.35 -2.39 -0.01 1.87 16 39 H 0.07 1.94 5.99 -2.39 -0.01 1.93 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.37 19.62 7.67 -92.71 -0.71 18.91 16 44 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 45 H 0.10 1.82 7.96 -2.39 -0.02 1.80 16 46 H 0.08 1.85 7.41 -2.39 -0.02 1.83 16 47 H 0.12 2.62 7.29 -2.91 -0.02 2.60 16 48 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 49 H 0.14 1.50 8.06 -2.92 -0.02 1.48 16 50 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 51 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -73.75 417.75 2.18 -71.56 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -0.48 Total: 39.35 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.65 Total: 4.01 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -5.92 Total: -129.12 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.10 Total: -33.71 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.75 2.18 -71.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725427459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.459 kcal (2) G-P(sol) polarization free energy of solvation -73.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds