Wall clock time and date at job start Wed Apr 1 2020 05:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 120.00362 * 2 1 4 4 N 1.34778 * 119.99896 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00259 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.47011 * 35.00083 * 5 4 2 7 7 C 1.52992 * 109.47382 * 275.00124 * 5 4 2 8 8 C 1.50705 * 109.47477 * 154.99472 * 5 4 2 9 9 O 1.21286 * 119.99516 * 24.03657 * 8 5 4 10 10 N 1.34771 * 120.00465 * 204.03210 * 8 5 4 11 11 C 1.46500 * 120.00134 * 185.23440 * 10 8 5 12 12 C 1.53001 * 109.46818 * 270.00058 * 11 10 8 13 13 C 1.53002 * 109.46772 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47160 * 180.02562 * 13 12 11 15 15 C 1.36936 * 120.00340 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00274 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00221 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00094 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47359 * 59.99901 * 19 17 15 21 21 H 1.48496 * 109.47219 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47160 * 299.99828 * 19 17 15 23 23 C 1.46501 * 119.99907 * 5.23726 * 10 8 5 24 24 C 1.50698 * 109.47533 * 95.56926 * 23 10 8 25 25 C 1.38237 * 119.99886 * 95.42736 * 24 23 10 26 26 C 1.38231 * 120.00245 * 179.97438 * 25 24 23 27 27 C 1.38235 * 119.99896 * 0.07024 * 26 25 24 28 28 C 1.38238 * 120.00134 * 359.90807 * 27 26 25 29 29 C 1.38232 * 119.99553 * 0.04703 * 28 27 26 30 30 H 1.09006 * 109.47026 * 270.00137 * 1 2 3 31 31 H 1.08999 * 109.47107 * 30.00056 * 1 2 3 32 32 H 1.08999 * 109.47696 * 150.00305 * 1 2 3 33 33 H 0.97002 * 119.99940 * 359.97438 * 4 2 1 34 34 H 1.09001 * 109.47480 * 63.87439 * 7 5 4 35 35 H 1.08998 * 109.47389 * 183.87899 * 7 5 4 36 36 H 1.09007 * 109.46968 * 303.87370 * 7 5 4 37 37 H 1.08996 * 109.46708 * 29.99905 * 11 10 8 38 38 H 1.08994 * 109.47107 * 150.00276 * 11 10 8 39 39 H 1.08996 * 109.47357 * 299.99450 * 12 11 10 40 40 H 1.09002 * 109.47372 * 60.00027 * 12 11 10 41 41 H 1.09004 * 109.47293 * 299.99574 * 13 12 11 42 42 H 1.09002 * 109.47142 * 59.99895 * 13 12 11 43 43 H 0.97006 * 120.00091 * 359.97438 * 14 13 12 44 44 H 0.96992 * 120.00498 * 179.97438 * 18 17 15 45 45 H 1.09008 * 109.46871 * 335.57089 * 23 10 8 46 46 H 1.08993 * 109.46946 * 215.57598 * 23 10 8 47 47 H 1.08004 * 120.00014 * 359.70402 * 25 24 23 48 48 H 1.08002 * 119.99849 * 179.97438 * 26 25 24 49 49 H 1.07996 * 119.99892 * 180.02562 * 27 26 25 50 50 H 1.07996 * 120.00100 * 180.02562 * 28 27 26 51 51 H 1.08001 * 119.99930 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0094 -0.3256 0.5884 7 6 4.1553 -1.0413 -1.4382 8 6 4.1484 -2.4551 0.5990 9 8 3.4460 -3.4439 0.5881 10 7 5.3783 -2.5082 1.1476 11 6 5.9119 -3.7854 1.6273 12 6 5.5279 -3.9793 3.0956 13 6 6.0847 -5.3136 3.5964 14 7 5.7166 -5.4996 5.0021 15 6 6.1081 -6.6299 5.6687 16 1 6.6879 -7.3845 5.1579 17 6 5.7597 -6.8059 7.0008 18 7 5.0535 -5.8861 7.6234 19 14 6.2931 -8.3481 7.9098 20 1 7.7757 -8.4334 7.9125 21 1 5.7974 -8.2947 9.3086 22 1 5.7298 -9.5427 7.2309 23 6 6.1815 -1.2886 1.2644 24 6 6.0001 -0.6972 2.6386 25 6 6.9077 -0.9858 3.6405 26 6 6.7417 -0.4429 4.9009 27 6 5.6673 0.3874 5.1597 28 6 4.7599 0.6765 4.1577 29 6 4.9265 0.1343 2.8971 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6958 -2.0073 -0.0005 34 1 3.8497 -0.0790 -1.8490 35 1 5.2431 -1.1105 -1.4455 36 1 3.7361 -1.8447 -2.0441 37 1 5.4965 -4.5990 1.0326 38 1 6.9977 -3.7840 1.5329 39 1 5.9433 -3.1658 3.6903 40 1 4.4420 -3.9808 3.1901 41 1 5.6689 -6.1270 3.0017 42 1 7.1706 -5.3125 3.5018 43 1 5.1961 -4.8217 5.4610 44 1 4.8098 -6.0092 8.5541 45 1 5.8587 -0.5677 0.5131 46 1 7.2329 -1.5297 1.1084 47 1 7.7441 -1.6390 3.4398 48 1 7.4506 -0.6688 5.6838 49 1 5.5379 0.8119 6.1443 50 1 3.9208 1.3255 4.3598 51 1 4.2174 0.3597 2.1143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725427461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:03 Heat of formation + Delta-G solvation = -35.674836 kcal Electronic energy + Delta-G solvation = -31429.573044 eV Core-core repulsion = 27329.179287 eV Total energy + Delta-G solvation = -4100.393757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.91792 -39.58762 -38.90001 -36.37660 -35.32150 -34.88405 -32.64805 -31.77132 -31.34211 -30.87904 -29.67016 -29.02869 -26.41873 -25.90142 -24.07087 -22.63647 -22.53967 -21.64013 -20.92819 -20.67412 -19.50942 -17.93627 -17.13224 -17.05071 -16.79393 -16.37959 -15.70870 -15.54789 -15.40188 -15.01861 -14.89187 -14.50087 -14.39537 -14.05083 -13.74248 -13.52790 -13.37568 -13.24518 -13.11453 -13.02514 -12.83174 -12.71626 -12.58513 -12.42252 -12.30719 -12.00588 -11.94401 -11.81914 -11.23769 -10.99006 -10.87233 -10.81944 -10.72390 -10.36800 -10.21079 -10.10402 -9.90270 -9.68972 -9.42222 -8.91496 -8.87661 -8.81227 -8.68618 -6.87469 -5.72037 -3.00629 1.25368 1.43342 2.26429 2.41177 2.64730 3.11672 3.46090 3.50110 3.51437 3.80575 4.16449 4.46500 4.60466 4.61050 4.63901 4.69117 4.75809 4.93680 5.00038 5.07394 5.11945 5.16204 5.16672 5.23971 5.26554 5.39382 5.40715 5.52307 5.54680 5.59946 5.63478 5.70893 5.76025 5.88823 5.97149 6.04039 6.04254 6.11962 6.32504 6.41557 6.45682 6.47548 6.54948 6.57294 6.91710 6.92247 6.99925 7.17854 7.21780 7.72554 7.89812 7.94725 8.46669 9.57416 10.16733 10.51411 11.50841 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.002883 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.581795 B = 9710.148721 C =10501.005852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.515 3.485 3 O -0.549 6.549 4 N -0.714 5.714 5 C 0.115 3.885 6 H 0.113 0.887 7 C -0.158 4.158 8 C 0.513 3.487 9 O -0.527 6.527 10 N -0.598 5.598 11 C 0.121 3.879 12 C -0.142 4.142 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.142 3.858 24 C -0.114 4.114 25 C -0.095 4.095 26 C -0.113 4.113 27 C -0.111 4.111 28 C -0.120 4.120 29 C -0.110 4.110 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.412 0.588 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 16.571 -18.031 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.427 6.427 4 N -0.369 5.369 5 C 0.007 3.993 6 H 0.131 0.869 7 C -0.217 4.217 8 C 0.299 3.701 9 O -0.403 6.403 10 N -0.330 5.330 11 C -0.002 4.002 12 C -0.181 4.181 13 C 0.029 3.971 14 N -0.376 5.376 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C 0.020 3.980 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.131 4.131 27 C -0.130 4.130 28 C -0.138 4.138 29 C -0.129 4.129 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.640 16.601 -18.016 24.553 hybrid contribution -0.148 -1.081 0.985 1.470 sum -1.788 15.520 -17.031 23.111 Atomic orbital electron populations 1.21876 0.91185 1.04971 1.05139 1.20860 0.90789 0.83106 0.75043 1.90717 1.70751 1.31299 1.49892 1.45945 1.05717 1.09912 1.75351 1.20999 0.82345 0.97332 0.98668 0.86949 1.22107 1.01723 1.03675 0.94160 1.20510 0.81603 0.89956 0.77998 1.90726 1.54865 1.36886 1.57846 1.47963 1.16140 1.09246 1.59645 1.21555 0.98449 0.84243 0.95915 1.22141 1.02031 0.99546 0.94384 1.20528 0.96205 0.93113 0.87211 1.42330 1.65383 1.23358 1.06494 1.19194 1.27606 0.96977 0.93196 0.91285 1.24737 1.00960 0.98402 0.96948 1.69656 1.42971 1.34516 1.11100 0.86269 0.78068 0.82922 0.78945 1.21301 1.21704 1.21289 1.20654 0.97015 0.86255 0.94108 1.20088 0.96407 0.98786 0.96190 1.21026 0.98965 0.98487 0.92867 1.21203 0.98167 0.96895 0.96843 1.21207 0.94646 0.98063 0.99038 1.21099 0.99229 1.00218 0.93218 1.21067 0.97095 0.97436 0.97272 0.88562 0.88738 0.89970 0.75100 0.90653 0.90908 0.91397 0.89764 0.90331 0.91168 0.91808 0.96451 0.96573 0.78322 0.93533 0.89156 0.88887 0.85849 0.85734 0.86070 0.86234 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.30 36.00 0.37 -0.72 16 2 C 0.51 5.20 7.90 -10.99 -0.09 5.11 16 3 O -0.55 -7.35 16.76 5.56 0.09 -7.26 16 4 N -0.71 -7.13 5.05 -54.93 -0.28 -7.40 16 5 C 0.11 1.19 2.12 -69.08 -0.15 1.04 16 6 H 0.11 1.20 3.36 -51.93 -0.17 1.02 16 7 C -0.16 -1.31 9.22 37.15 0.34 -0.97 16 8 C 0.51 6.53 6.88 -10.99 -0.08 6.45 16 9 O -0.53 -8.45 15.62 5.55 0.09 -8.36 16 10 N -0.60 -6.98 2.46 -175.06 -0.43 -7.41 16 11 C 0.12 1.60 5.41 -4.04 -0.02 1.58 16 12 C -0.14 -2.46 5.53 -26.73 -0.15 -2.61 16 13 C 0.16 3.29 6.26 -4.04 -0.03 3.26 16 14 N -0.73 -19.39 5.60 -59.91 -0.34 -19.72 16 15 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 16 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.94 13.06 55.49 0.72 -28.21 16 19 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.14 1.31 5.40 -5.19 -0.03 1.29 16 24 C -0.11 -1.29 4.98 -104.63 -0.52 -1.81 16 25 C -0.09 -1.14 7.67 -39.58 -0.30 -1.45 16 26 C -0.11 -1.43 10.05 -39.58 -0.40 -1.83 16 27 C -0.11 -1.37 10.05 -39.58 -0.40 -1.76 16 28 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 29 C -0.11 -1.33 9.58 -39.59 -0.38 -1.71 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 3.90 7.77 -40.82 -0.32 3.59 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.49 7.40 -51.93 -0.38 0.11 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.20 7.50 -51.93 -0.39 0.81 16 38 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 39 H 0.07 1.22 5.54 -51.93 -0.29 0.93 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.38 10.79 7.67 -40.82 -0.31 10.47 16 44 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.09 0.68 5.15 -51.92 -0.27 0.41 16 46 H 0.09 0.67 7.88 -51.93 -0.41 0.26 16 47 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 48 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 49 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 50 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 51 H 0.12 1.37 5.58 -52.49 -0.29 1.08 16 LS Contribution 415.62 15.07 6.26 6.26 Total: -1.00 -36.04 415.62 -9.23 -45.27 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -7.87 Total: 12.55 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.46 Total: -3.53 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.32 Total: -62.75 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.18 Total: -15.62 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.04 -9.23 -45.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725427461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.592 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds