Wall clock time and date at job start Wed Apr 1 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 120.00362 * 2 1 4 4 N 1.34778 * 119.99896 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00259 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.47011 * 35.00083 * 5 4 2 7 7 C 1.52992 * 109.47382 * 275.00124 * 5 4 2 8 8 C 1.50705 * 109.47477 * 154.99472 * 5 4 2 9 9 O 1.21286 * 119.99516 * 24.03657 * 8 5 4 10 10 N 1.34771 * 120.00465 * 204.03210 * 8 5 4 11 11 C 1.46500 * 120.00134 * 185.23440 * 10 8 5 12 12 C 1.53001 * 109.46818 * 270.00058 * 11 10 8 13 13 C 1.53002 * 109.46772 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47160 * 180.02562 * 13 12 11 15 15 C 1.36936 * 120.00340 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00274 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00221 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00094 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47359 * 59.99901 * 19 17 15 21 21 H 1.48496 * 109.47219 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47160 * 299.99828 * 19 17 15 23 23 C 1.46501 * 119.99907 * 5.23726 * 10 8 5 24 24 C 1.50698 * 109.47533 * 95.56926 * 23 10 8 25 25 C 1.38237 * 119.99886 * 95.42736 * 24 23 10 26 26 C 1.38231 * 120.00245 * 179.97438 * 25 24 23 27 27 C 1.38235 * 119.99896 * 0.07024 * 26 25 24 28 28 C 1.38238 * 120.00134 * 359.90807 * 27 26 25 29 29 C 1.38232 * 119.99553 * 0.04703 * 28 27 26 30 30 H 1.09006 * 109.47026 * 270.00137 * 1 2 3 31 31 H 1.08999 * 109.47107 * 30.00056 * 1 2 3 32 32 H 1.08999 * 109.47696 * 150.00305 * 1 2 3 33 33 H 0.97002 * 119.99940 * 359.97438 * 4 2 1 34 34 H 1.09001 * 109.47480 * 63.87439 * 7 5 4 35 35 H 1.08998 * 109.47389 * 183.87899 * 7 5 4 36 36 H 1.09007 * 109.46968 * 303.87370 * 7 5 4 37 37 H 1.08996 * 109.46708 * 29.99905 * 11 10 8 38 38 H 1.08994 * 109.47107 * 150.00276 * 11 10 8 39 39 H 1.08996 * 109.47357 * 299.99450 * 12 11 10 40 40 H 1.09002 * 109.47372 * 60.00027 * 12 11 10 41 41 H 1.09004 * 109.47293 * 299.99574 * 13 12 11 42 42 H 1.09002 * 109.47142 * 59.99895 * 13 12 11 43 43 H 0.97006 * 120.00091 * 359.97438 * 14 13 12 44 44 H 0.96992 * 120.00498 * 179.97438 * 18 17 15 45 45 H 1.09008 * 109.46871 * 335.57089 * 23 10 8 46 46 H 1.08993 * 109.46946 * 215.57598 * 23 10 8 47 47 H 1.08004 * 120.00014 * 359.70402 * 25 24 23 48 48 H 1.08002 * 119.99849 * 179.97438 * 26 25 24 49 49 H 1.07996 * 119.99892 * 180.02562 * 27 26 25 50 50 H 1.07996 * 120.00100 * 180.02562 * 28 27 26 51 51 H 1.08001 * 119.99930 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 1 4.0094 -0.3256 0.5884 7 6 4.1553 -1.0413 -1.4382 8 6 4.1484 -2.4551 0.5990 9 8 3.4460 -3.4439 0.5881 10 7 5.3783 -2.5082 1.1476 11 6 5.9119 -3.7854 1.6273 12 6 5.5279 -3.9793 3.0956 13 6 6.0847 -5.3136 3.5964 14 7 5.7166 -5.4996 5.0021 15 6 6.1081 -6.6299 5.6687 16 1 6.6879 -7.3845 5.1579 17 6 5.7597 -6.8059 7.0008 18 7 5.0535 -5.8861 7.6234 19 14 6.2931 -8.3481 7.9098 20 1 7.7757 -8.4334 7.9125 21 1 5.7974 -8.2947 9.3086 22 1 5.7298 -9.5427 7.2309 23 6 6.1815 -1.2886 1.2644 24 6 6.0001 -0.6972 2.6386 25 6 6.9077 -0.9858 3.6405 26 6 6.7417 -0.4429 4.9009 27 6 5.6673 0.3874 5.1597 28 6 4.7599 0.6765 4.1577 29 6 4.9265 0.1343 2.8971 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6958 -2.0073 -0.0005 34 1 3.8497 -0.0790 -1.8490 35 1 5.2431 -1.1105 -1.4455 36 1 3.7361 -1.8447 -2.0441 37 1 5.4965 -4.5990 1.0326 38 1 6.9977 -3.7840 1.5329 39 1 5.9433 -3.1658 3.6903 40 1 4.4420 -3.9808 3.1901 41 1 5.6689 -6.1270 3.0017 42 1 7.1706 -5.3125 3.5018 43 1 5.1961 -4.8217 5.4610 44 1 4.8098 -6.0092 8.5541 45 1 5.8587 -0.5677 0.5131 46 1 7.2329 -1.5297 1.1084 47 1 7.7441 -1.6390 3.4398 48 1 7.4506 -0.6688 5.6838 49 1 5.5379 0.8119 6.1443 50 1 3.9208 1.3255 4.3598 51 1 4.2174 0.3597 2.1143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725427461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:02 Heat of formation + Delta-G solvation = -59.419092 kcal Electronic energy + Delta-G solvation = -31430.602672 eV Core-core repulsion = 27329.179287 eV Total energy + Delta-G solvation = -4101.423385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.84953 -40.45154 -39.84811 -37.61867 -36.60930 -36.12027 -34.25654 -32.70556 -32.54809 -31.80827 -31.16912 -29.75096 -27.53329 -27.11350 -25.46952 -24.04885 -23.54481 -22.64195 -22.38628 -21.53227 -20.43283 -19.15766 -18.80515 -18.06468 -17.72362 -17.28440 -16.80010 -16.60838 -16.32497 -16.22980 -15.93377 -15.85556 -15.73546 -15.31534 -15.10737 -14.74919 -14.56085 -14.34068 -14.27874 -13.84897 -13.61605 -13.60364 -13.49096 -13.33494 -13.23198 -13.11247 -12.95566 -12.80713 -12.73696 -12.64553 -12.40833 -12.16733 -12.07457 -11.88663 -11.81385 -11.77369 -11.05579 -10.93881 -10.90210 -10.27662 -9.92354 -9.82041 -9.65809 -9.02150 -7.95764 -5.25691 0.32116 0.48134 1.32977 1.45667 1.49546 1.55573 1.58856 1.76098 2.30571 2.55448 2.87009 3.28893 3.37445 3.66611 3.76383 3.87427 3.91249 3.94821 4.01886 4.05764 4.13283 4.20984 4.29632 4.32901 4.48448 4.50480 4.56668 4.58254 4.60578 4.64143 4.65146 4.69832 4.72805 4.77672 4.86718 5.05350 5.06366 5.10542 5.13065 5.24206 5.30094 5.32621 5.42344 5.47777 5.54165 5.61721 5.63217 6.07946 6.21129 6.25463 6.44804 6.93866 7.14119 7.31103 8.06893 8.30235 9.27756 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.002883 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.581795 B = 9710.148721 C =10501.005852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.510 3.490 3 O -0.585 6.585 4 N -0.715 5.715 5 C 0.117 3.883 6 H 0.111 0.889 7 C -0.152 4.152 8 C 0.511 3.489 9 O -0.565 6.565 10 N -0.593 5.593 11 C 0.128 3.872 12 C -0.124 4.124 13 C 0.156 3.844 14 N -0.747 5.747 15 C -0.248 4.248 16 H 0.077 0.923 17 C -0.077 4.077 18 N -0.971 5.971 19 Si 0.976 3.024 20 H -0.274 1.274 21 H -0.295 1.295 22 H -0.279 1.279 23 C 0.139 3.861 24 C -0.114 4.114 25 C -0.103 4.103 26 C -0.132 4.132 27 C -0.124 4.124 28 C -0.132 4.132 29 C -0.120 4.120 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.013 0.987 42 H 0.035 0.965 43 H 0.370 0.630 44 H 0.251 0.749 45 H 0.111 0.889 46 H 0.124 0.876 47 H 0.137 0.863 48 H 0.127 0.873 49 H 0.132 0.868 50 H 0.130 0.870 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 16.388 -19.545 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.300 3.700 3 O -0.466 6.466 4 N -0.369 5.369 5 C 0.008 3.992 6 H 0.129 0.871 7 C -0.210 4.210 8 C 0.299 3.701 9 O -0.444 6.444 10 N -0.323 5.323 11 C 0.005 3.995 12 C -0.163 4.163 13 C 0.030 3.970 14 N -0.390 5.390 15 C -0.380 4.380 16 H 0.095 0.905 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.804 3.196 20 H -0.200 1.200 21 H -0.221 1.221 22 H -0.205 1.205 23 C 0.018 3.982 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.150 4.150 27 C -0.143 4.143 28 C -0.150 4.150 29 C -0.138 4.138 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.031 0.969 42 H 0.052 0.948 43 H 0.201 0.799 44 H 0.060 0.940 45 H 0.129 0.871 46 H 0.142 0.858 47 H 0.155 0.845 48 H 0.145 0.855 49 H 0.150 0.850 50 H 0.148 0.852 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.545 16.418 -19.578 25.557 hybrid contribution -0.492 -1.000 1.436 1.818 sum -1.038 15.418 -18.142 23.831 Atomic orbital electron populations 1.21916 0.88273 1.06409 1.06041 1.21514 0.92194 0.82380 0.73934 1.90695 1.71764 1.32403 1.51692 1.46042 1.05742 1.10132 1.74994 1.21037 0.82719 0.95626 0.99784 0.87118 1.22086 1.02948 1.03575 0.92417 1.20959 0.81470 0.90203 0.77499 1.90709 1.55938 1.38368 1.59385 1.47962 1.16113 1.09492 1.58771 1.21428 1.00422 0.85005 0.92647 1.21942 0.99461 0.97569 0.97300 1.20698 0.97153 0.94813 0.84373 1.42581 1.65296 1.22527 1.08552 1.19634 1.26982 0.97686 0.93663 0.90465 1.25617 1.01571 1.01700 0.97981 1.69829 1.44607 1.36609 1.11098 0.85177 0.78130 0.79138 0.77115 1.19965 1.22129 1.20472 1.20945 0.98446 0.85518 0.93303 1.20302 0.95779 0.98313 0.97149 1.21254 0.99587 0.98599 0.92744 1.21427 0.98590 0.97437 0.97559 1.21425 0.94768 0.98317 0.99756 1.21336 0.99658 1.00575 0.93440 1.21232 0.97516 0.97777 0.97324 0.87775 0.87998 0.87874 0.74834 0.90673 0.88937 0.91448 0.90660 0.86838 0.91194 0.95225 0.96875 0.94753 0.79861 0.94026 0.87108 0.85824 0.84503 0.85471 0.85000 0.85163 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.30 71.23 0.73 -1.15 16 2 C 0.51 9.95 7.90 87.66 0.69 10.64 16 3 O -0.59 -15.43 16.76 -3.04 -0.05 -15.48 16 4 N -0.71 -13.78 5.05 -446.10 -2.25 -16.03 16 5 C 0.12 2.28 2.12 44.24 0.09 2.37 16 6 H 0.11 2.23 3.36 -2.39 -0.01 2.22 16 7 C -0.15 -2.22 9.22 71.98 0.66 -1.56 16 8 C 0.51 12.49 6.88 87.66 0.60 13.09 16 9 O -0.57 -18.05 15.62 -3.05 -0.05 -18.10 16 10 N -0.59 -12.71 2.46 -826.16 -2.04 -14.74 16 11 C 0.13 3.15 5.41 86.38 0.47 3.62 16 12 C -0.12 -4.23 5.53 30.60 0.17 -4.06 16 13 C 0.16 6.43 6.26 86.38 0.54 6.97 16 14 N -0.75 -39.90 5.60 -343.45 -1.92 -41.82 16 15 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 17 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 18 N -0.97 -61.10 13.06 21.65 0.28 -60.81 16 19 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 C 0.14 2.19 5.40 85.63 0.46 2.65 16 24 C -0.11 -2.44 4.98 -19.87 -0.10 -2.54 16 25 C -0.10 -2.37 7.67 22.27 0.17 -2.20 16 26 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 27 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 28 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 29 C -0.12 -2.83 9.58 22.27 0.21 -2.61 16 30 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.41 7.67 7.77 -92.71 -0.72 6.95 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 0.97 7.40 -2.39 -0.02 0.95 16 36 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 2.04 7.50 -2.39 -0.02 2.03 16 38 H 0.11 2.05 7.95 -2.39 -0.02 2.03 16 39 H 0.07 2.39 5.54 -2.39 -0.01 2.38 16 40 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.37 21.36 7.67 -92.70 -0.71 20.65 16 44 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.11 1.33 5.15 -2.38 -0.01 1.32 16 46 H 0.12 1.25 7.88 -2.39 -0.02 1.23 16 47 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 48 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 49 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 50 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 51 H 0.12 2.73 5.58 -2.91 -0.02 2.72 16 Total: -1.00 -78.83 415.62 2.21 -76.62 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: -0.48 Total: 42.67 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 6.69 Total: -1.22 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -5.93 Total: -133.42 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.10 Total: -33.58 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -78.83 2.21 -76.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725427461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.203 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds