Wall clock time and date at job start Wed Apr 1 2020 05:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47341 * 2 1 4 4 O 1.42908 * 109.47158 * 240.00183 * 2 1 3 5 5 C 1.42897 * 114.00018 * 89.99732 * 4 2 1 6 6 C 1.50703 * 109.46835 * 179.97438 * 5 4 2 7 7 C 1.38644 * 120.79014 * 269.72267 * 6 5 4 8 8 C 1.38206 * 119.16029 * 179.80231 * 7 6 5 9 9 N 1.31873 * 120.76537 * 0.47982 * 8 7 6 10 10 C 1.31869 * 121.72061 * 359.74788 * 9 8 7 11 11 C 1.38200 * 120.76936 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47125 * 120.00237 * 2 1 3 13 13 O 1.21279 * 120.00406 * 114.99859 * 12 2 1 14 14 N 1.34780 * 119.99563 * 294.99441 * 12 2 1 15 15 C 1.46499 * 120.00229 * 0.02562 * 14 12 2 16 16 C 1.46499 * 119.99546 * 180.02562 * 14 12 2 17 17 H 1.08996 * 109.47508 * 0.02562 * 16 14 12 18 18 C 1.53002 * 109.47083 * 120.00689 * 16 14 12 19 19 N 1.46498 * 109.46713 * 304.99744 * 18 16 14 20 20 C 1.36944 * 119.99896 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99582 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99762 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99597 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00359 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47354 * 89.99981 * 24 22 20 26 26 H 1.48502 * 109.46982 * 209.99631 * 24 22 20 27 27 H 1.48493 * 109.47081 * 329.99547 * 24 22 20 28 28 C 1.53006 * 109.46868 * 240.00135 * 16 14 12 29 29 C 1.53004 * 117.50119 * 248.74782 * 28 16 14 30 30 C 1.53002 * 117.49554 * 180.08809 * 28 16 14 31 31 H 1.09002 * 109.47329 * 59.99974 * 1 2 3 32 32 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46949 * 300.00192 * 1 2 3 34 34 H 1.09000 * 109.47090 * 299.99946 * 5 4 2 35 35 H 1.09002 * 109.46917 * 60.00516 * 5 4 2 36 36 H 1.08001 * 120.42304 * 359.97438 * 7 6 5 37 37 H 1.07998 * 119.61787 * 180.20495 * 8 7 6 38 38 H 1.08002 * 119.61094 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.41978 * 179.97438 * 11 10 9 40 40 H 1.09002 * 109.47391 * 89.99442 * 15 14 12 41 41 H 1.09001 * 109.46813 * 329.99499 * 15 14 12 42 42 H 1.09004 * 109.47041 * 209.99626 * 15 14 12 43 43 H 1.08997 * 109.47059 * 64.99868 * 18 16 14 44 44 H 1.09000 * 109.47062 * 184.99937 * 18 16 14 45 45 H 0.97001 * 120.00363 * 359.97438 * 19 18 16 46 46 H 0.97002 * 119.99571 * 180.02562 * 23 22 20 47 47 H 1.09001 * 115.55261 * 34.42285 * 28 16 14 48 48 H 1.08997 * 117.49595 * 0.02562 * 29 28 16 49 49 H 1.08993 * 117.50109 * 145.02335 * 29 28 16 50 50 H 1.09008 * 117.49624 * 214.98005 * 30 28 16 51 51 H 1.09000 * 117.50199 * 359.97438 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.2001 0.1829 -2.2941 6 6 2.7014 -0.6282 -3.4611 7 6 4.0604 -0.8065 -3.6698 8 6 4.4829 -1.5603 -4.7484 9 7 3.6107 -2.0983 -5.5783 10 6 2.3113 -1.9458 -5.4134 11 6 1.8147 -1.2091 -4.3548 12 6 2.0323 -0.7105 1.2304 13 8 2.6529 -1.7467 1.1215 14 7 1.7919 -0.1941 2.4520 15 6 1.0419 1.0574 2.5836 16 6 2.2808 -0.8845 3.6481 17 1 2.8120 -1.7896 3.3537 18 6 3.2306 0.0368 4.4163 19 7 4.3011 0.4881 3.5238 20 6 5.2762 1.3269 3.9938 21 1 5.2563 1.6552 5.0225 22 6 6.2908 1.7541 3.1483 23 7 7.2278 2.5607 3.6000 24 14 6.3257 1.1855 1.3693 25 1 5.5613 2.1418 0.5289 26 1 7.7321 1.1254 0.8964 27 1 5.7115 -0.1627 1.2684 28 6 1.0962 -1.2559 4.5424 29 6 0.9616 -0.5213 5.8779 30 6 1.4012 -1.9874 5.8512 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.2537 0.6546 -2.5589 35 1 2.9320 0.9513 -2.0450 36 1 4.7798 -0.3643 -2.9964 37 1 5.5397 -1.7067 -4.9160 38 1 1.6273 -2.4012 -6.1142 39 1 0.7495 -1.0874 -4.2253 40 1 -0.0221 0.8362 2.6681 41 1 1.2151 1.6789 1.7051 42 1 1.3746 1.5883 3.4756 43 1 2.6784 0.9002 4.7871 44 1 3.6629 -0.5063 5.2566 45 1 4.3196 0.1923 2.6002 46 1 7.9366 2.8595 3.0090 47 1 0.1775 -1.5218 4.0195 48 1 1.7167 0.2267 6.1191 49 1 -0.0456 -0.3044 6.2337 50 1 0.6829 -2.7343 6.1894 51 1 2.4457 -2.2044 6.0748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725466979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:27 Heat of formation + Delta-G solvation = 14.660815 kcal Electronic energy + Delta-G solvation = -31527.891812 eV Core-core repulsion = 27429.680773 eV Total energy + Delta-G solvation = -4098.211039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51239 -40.21137 -38.48292 -37.33241 -35.20812 -34.34822 -33.58656 -31.75875 -31.41082 -30.96713 -28.42867 -27.17470 -26.75795 -24.93559 -23.69079 -23.55285 -22.48005 -22.21286 -21.74299 -20.28524 -18.88795 -17.75157 -17.50102 -16.96167 -16.74620 -16.49203 -16.21075 -15.81777 -15.55041 -15.31510 -14.98998 -14.37829 -14.13288 -14.03054 -13.92643 -13.85417 -13.62752 -13.46181 -13.17755 -12.82821 -12.69109 -12.59121 -12.32619 -12.20799 -11.94178 -11.70745 -11.68551 -11.61338 -11.43754 -11.20801 -10.90709 -10.79143 -10.41069 -10.18948 -10.11254 -9.95014 -9.85225 -9.70037 -9.62687 -9.34946 -9.33125 -8.92515 -8.46833 -7.25960 -5.80523 -3.15410 0.91193 0.94600 2.72996 2.75489 3.31133 3.42314 3.47389 3.47707 3.82719 3.91482 4.26242 4.35612 4.45996 4.54287 4.57174 4.70485 4.73139 4.82110 4.86342 4.91350 4.97512 5.04461 5.05995 5.14211 5.14961 5.23347 5.32088 5.40630 5.42996 5.46909 5.49057 5.58312 5.62456 5.69496 5.72976 5.74158 5.79894 5.84592 5.94186 6.01889 6.10024 6.18758 6.25406 6.32700 6.47724 6.53216 6.70075 6.89049 7.50228 7.75179 7.95070 8.31808 8.38921 9.18028 9.91024 10.11137 11.37706 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009274 B = 0.003655 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.585119 B = 7659.775899 C = 9836.797806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 H 0.089 0.911 4 O -0.348 6.348 5 C 0.096 3.904 6 C -0.042 4.042 7 C -0.148 4.148 8 C 0.097 3.903 9 N -0.483 5.483 10 C 0.093 3.907 11 C -0.152 4.152 12 C 0.514 3.486 13 O -0.518 6.518 14 N -0.595 5.595 15 C 0.077 3.923 16 C 0.159 3.841 17 H 0.104 0.896 18 C 0.147 3.853 19 N -0.752 5.752 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.009 3.991 23 N -0.933 5.933 24 Si 0.871 3.129 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.271 1.271 28 C -0.158 4.158 29 C -0.182 4.182 30 C -0.173 4.173 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.138 0.862 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.362 0.638 46 H 0.259 0.741 47 H 0.103 0.897 48 H 0.108 0.892 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.816 -4.051 -9.639 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 H 0.107 0.893 4 O -0.266 6.266 5 C 0.019 3.981 6 C -0.050 4.050 7 C -0.168 4.168 8 C -0.059 4.059 9 N -0.192 5.192 10 C -0.064 4.064 11 C -0.172 4.172 12 C 0.300 3.700 13 O -0.392 6.392 14 N -0.329 5.329 15 C -0.066 4.066 16 C 0.056 3.944 17 H 0.122 0.878 18 C 0.019 3.981 19 N -0.398 5.398 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.187 4.187 23 N -0.581 5.581 24 Si 0.701 3.299 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.197 1.197 28 C -0.178 4.178 29 C -0.219 4.219 30 C -0.210 4.210 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.196 0.804 46 H 0.069 0.931 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.108 0.892 50 H 0.110 0.890 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.992 -5.152 -10.265 21.346 hybrid contribution -0.218 0.573 -0.486 0.782 sum -18.210 -4.579 -10.751 21.637 Atomic orbital electron populations 1.22361 0.93433 1.03907 1.03538 1.21942 0.95162 0.96578 0.85496 0.89336 1.88108 1.86665 1.33424 1.18425 1.21447 1.00182 0.91811 0.84653 1.19956 0.93689 0.96676 0.94681 1.22194 0.96041 0.99575 0.99018 1.22796 0.99787 0.92945 0.90395 1.67671 1.03361 1.19625 1.28566 1.22751 0.92014 0.95534 0.96093 1.22050 1.00866 0.98409 0.95864 1.20254 0.80002 0.85583 0.84112 1.90724 1.39224 1.23397 1.85857 1.47594 1.55521 1.24562 1.05200 1.21894 0.95119 0.85681 1.03936 1.20905 0.92836 0.97039 0.83665 0.87788 1.21110 0.88817 0.95246 0.92916 1.42671 1.28817 1.58243 1.10020 1.19033 1.01367 1.19280 0.97580 0.89156 1.24609 0.97218 0.99436 0.97457 1.69696 1.15308 1.37803 1.35245 0.86704 0.77243 0.79003 0.86904 1.21295 1.21483 1.19685 1.22530 0.99892 1.05646 0.89743 1.23209 1.02832 0.95693 1.00173 1.22970 1.02728 0.95151 1.00172 0.91364 0.91153 0.90016 0.91619 0.91579 0.84420 0.82408 0.82617 0.84662 0.92587 0.91477 0.89779 0.94648 0.94486 0.80449 0.93057 0.87858 0.87376 0.89177 0.88982 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.25 37.16 0.34 -1.29 16 2 C 0.07 0.93 2.32 -27.88 -0.06 0.86 16 3 H 0.09 1.07 6.78 -51.93 -0.35 0.72 16 4 O -0.35 -5.22 9.51 -55.09 -0.52 -5.75 16 5 C 0.10 1.10 5.92 36.01 0.21 1.32 16 6 C -0.04 -0.50 5.55 -104.32 -0.58 -1.08 16 7 C -0.15 -1.83 9.82 -39.44 -0.39 -2.22 16 8 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 9 N -0.48 -5.98 10.36 -13.25 -0.14 -6.12 16 10 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 11 C -0.15 -1.55 9.82 -39.44 -0.39 -1.94 16 12 C 0.51 8.80 6.80 -10.98 -0.07 8.73 16 13 O -0.52 -11.19 15.83 -14.30 -0.23 -11.41 16 14 N -0.59 -8.98 2.24 -173.93 -0.39 -9.37 16 15 C 0.08 0.87 8.29 59.85 0.50 1.37 16 16 C 0.16 2.55 2.59 -67.93 -0.18 2.37 16 17 H 0.10 1.96 6.90 -51.93 -0.36 1.61 16 18 C 0.15 2.75 4.14 -4.04 -0.02 2.73 16 19 N -0.75 -18.03 5.24 -59.91 -0.31 -18.35 16 20 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 22 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 23 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 24 Si 0.87 22.71 27.74 -169.99 -4.71 18.00 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 27 H -0.27 -7.16 6.52 56.52 0.37 -6.80 16 28 C -0.16 -1.96 5.48 -90.61 -0.50 -2.46 16 29 C -0.18 -2.01 9.59 -26.69 -0.26 -2.26 16 30 C -0.17 -1.96 9.94 -26.69 -0.27 -2.22 16 31 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.63 5.12 -51.93 -0.27 0.37 16 34 H 0.07 0.56 7.83 -51.93 -0.41 0.15 16 35 H 0.07 0.75 8.04 -51.93 -0.42 0.34 16 36 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.06 0.48 7.02 -51.93 -0.36 0.11 16 41 H 0.07 0.69 6.07 -51.93 -0.32 0.37 16 42 H 0.08 1.03 6.53 -51.93 -0.34 0.69 16 43 H 0.04 0.63 5.34 -51.93 -0.28 0.36 16 44 H 0.04 0.71 7.44 -51.93 -0.39 0.33 16 45 H 0.36 9.00 4.93 -40.82 -0.20 8.80 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 48 H 0.11 1.33 5.80 -51.93 -0.30 1.02 16 49 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 51 H 0.10 1.21 7.66 -51.93 -0.40 0.81 16 LS Contribution 407.96 15.07 6.15 6.15 Total: -1.00 -36.85 407.96 -9.45 -46.30 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.77 Total: 10.28 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.30 Total: -1.21 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.07 Total: -62.35 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.75 Total: -17.16 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.85 -9.45 -46.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725466979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.959 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds