Wall clock time and date at job start Wed Apr 1 2020 05:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47341 * 2 1 4 4 O 1.42908 * 109.47158 * 240.00183 * 2 1 3 5 5 C 1.42897 * 114.00018 * 89.99732 * 4 2 1 6 6 C 1.50703 * 109.46835 * 179.97438 * 5 4 2 7 7 C 1.38644 * 120.79014 * 269.72267 * 6 5 4 8 8 C 1.38206 * 119.16029 * 179.80231 * 7 6 5 9 9 N 1.31873 * 120.76537 * 0.47982 * 8 7 6 10 10 C 1.31869 * 121.72061 * 359.74788 * 9 8 7 11 11 C 1.38200 * 120.76936 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47125 * 120.00237 * 2 1 3 13 13 O 1.21279 * 120.00406 * 114.99859 * 12 2 1 14 14 N 1.34780 * 119.99563 * 294.99441 * 12 2 1 15 15 C 1.46499 * 120.00229 * 0.02562 * 14 12 2 16 16 C 1.46499 * 119.99546 * 180.02562 * 14 12 2 17 17 H 1.08996 * 109.47508 * 0.02562 * 16 14 12 18 18 C 1.53002 * 109.47083 * 120.00689 * 16 14 12 19 19 N 1.46498 * 109.46713 * 304.99744 * 18 16 14 20 20 C 1.36944 * 119.99896 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99582 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99762 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99597 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00359 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47354 * 89.99981 * 24 22 20 26 26 H 1.48502 * 109.46982 * 209.99631 * 24 22 20 27 27 H 1.48493 * 109.47081 * 329.99547 * 24 22 20 28 28 C 1.53006 * 109.46868 * 240.00135 * 16 14 12 29 29 C 1.53004 * 117.50119 * 248.74782 * 28 16 14 30 30 C 1.53002 * 117.49554 * 180.08809 * 28 16 14 31 31 H 1.09002 * 109.47329 * 59.99974 * 1 2 3 32 32 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46949 * 300.00192 * 1 2 3 34 34 H 1.09000 * 109.47090 * 299.99946 * 5 4 2 35 35 H 1.09002 * 109.46917 * 60.00516 * 5 4 2 36 36 H 1.08001 * 120.42304 * 359.97438 * 7 6 5 37 37 H 1.07998 * 119.61787 * 180.20495 * 8 7 6 38 38 H 1.08002 * 119.61094 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.41978 * 179.97438 * 11 10 9 40 40 H 1.09002 * 109.47391 * 89.99442 * 15 14 12 41 41 H 1.09001 * 109.46813 * 329.99499 * 15 14 12 42 42 H 1.09004 * 109.47041 * 209.99626 * 15 14 12 43 43 H 1.08997 * 109.47059 * 64.99868 * 18 16 14 44 44 H 1.09000 * 109.47062 * 184.99937 * 18 16 14 45 45 H 0.97001 * 120.00363 * 359.97438 * 19 18 16 46 46 H 0.97002 * 119.99571 * 180.02562 * 23 22 20 47 47 H 1.09001 * 115.55261 * 34.42285 * 28 16 14 48 48 H 1.08997 * 117.49595 * 0.02562 * 29 28 16 49 49 H 1.08993 * 117.50109 * 145.02335 * 29 28 16 50 50 H 1.09008 * 117.49624 * 214.98005 * 30 28 16 51 51 H 1.09000 * 117.50199 * 359.97438 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.2001 0.1829 -2.2941 6 6 2.7014 -0.6282 -3.4611 7 6 4.0604 -0.8065 -3.6698 8 6 4.4829 -1.5603 -4.7484 9 7 3.6107 -2.0983 -5.5783 10 6 2.3113 -1.9458 -5.4134 11 6 1.8147 -1.2091 -4.3548 12 6 2.0323 -0.7105 1.2304 13 8 2.6529 -1.7467 1.1215 14 7 1.7919 -0.1941 2.4520 15 6 1.0419 1.0574 2.5836 16 6 2.2808 -0.8845 3.6481 17 1 2.8120 -1.7896 3.3537 18 6 3.2306 0.0368 4.4163 19 7 4.3011 0.4881 3.5238 20 6 5.2762 1.3269 3.9938 21 1 5.2563 1.6552 5.0225 22 6 6.2908 1.7541 3.1483 23 7 7.2278 2.5607 3.6000 24 14 6.3257 1.1855 1.3693 25 1 5.5613 2.1418 0.5289 26 1 7.7321 1.1254 0.8964 27 1 5.7115 -0.1627 1.2684 28 6 1.0962 -1.2559 4.5424 29 6 0.9616 -0.5213 5.8779 30 6 1.4012 -1.9874 5.8512 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.2537 0.6546 -2.5589 35 1 2.9320 0.9513 -2.0450 36 1 4.7798 -0.3643 -2.9964 37 1 5.5397 -1.7067 -4.9160 38 1 1.6273 -2.4012 -6.1142 39 1 0.7495 -1.0874 -4.2253 40 1 -0.0221 0.8362 2.6681 41 1 1.2151 1.6789 1.7051 42 1 1.3746 1.5883 3.4756 43 1 2.6784 0.9002 4.7871 44 1 3.6629 -0.5063 5.2566 45 1 4.3196 0.1923 2.6002 46 1 7.9366 2.8595 3.0090 47 1 0.1775 -1.5218 4.0195 48 1 1.7167 0.2267 6.1191 49 1 -0.0456 -0.3044 6.2337 50 1 0.6829 -2.7343 6.1894 51 1 2.4457 -2.2044 6.0748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725466979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:26 Heat of formation + Delta-G solvation = -9.221500 kcal Electronic energy + Delta-G solvation = -31528.927427 eV Core-core repulsion = 27429.680773 eV Total energy + Delta-G solvation = -4099.246654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.60884 -41.14551 -39.55363 -38.45273 -36.56558 -36.02672 -34.50572 -33.53971 -32.24781 -32.22060 -29.83538 -28.09577 -27.78860 -26.41691 -24.75060 -24.48195 -23.80937 -23.08861 -23.02786 -21.41746 -20.37637 -19.34961 -18.75089 -18.02704 -17.66448 -17.50596 -17.34059 -16.80752 -16.66466 -16.54855 -16.18599 -15.88226 -15.41847 -15.24744 -15.07023 -14.84338 -14.77628 -14.62651 -14.41916 -14.12592 -14.00862 -13.53607 -13.48708 -13.41014 -13.10779 -13.07325 -12.88742 -12.80278 -12.50028 -12.42410 -12.32800 -12.18088 -12.07405 -11.90012 -11.36687 -11.11178 -11.08376 -10.88303 -10.83200 -10.54938 -10.48564 -10.16449 -9.67277 -9.35806 -8.10737 -5.41854 0.05378 0.12113 1.20207 1.28959 1.36395 1.48936 1.67960 2.36958 2.56525 2.91746 2.98829 3.20924 3.33741 3.48631 3.51402 3.65081 3.68289 3.81547 3.88652 3.97893 4.00623 4.02910 4.08539 4.12080 4.14667 4.27511 4.29965 4.34092 4.37256 4.53282 4.62032 4.64900 4.75243 4.78076 4.80575 4.81697 4.84885 4.91253 4.96532 5.05044 5.08289 5.20269 5.22980 5.27521 5.33727 5.51129 5.67848 5.69534 5.91358 6.13974 6.35270 6.92098 6.99255 7.09215 7.76438 7.94164 9.10755 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009274 B = 0.003655 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.585119 B = 7659.775899 C = 9836.797806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.102 0.898 4 O -0.381 6.381 5 C 0.093 3.907 6 C -0.059 4.059 7 C -0.171 4.171 8 C 0.086 3.914 9 N -0.506 5.506 10 C 0.088 3.912 11 C -0.147 4.147 12 C 0.501 3.499 13 O -0.578 6.578 14 N -0.592 5.592 15 C 0.067 3.933 16 C 0.165 3.835 17 H 0.068 0.932 18 C 0.146 3.854 19 N -0.756 5.756 20 C -0.226 4.226 21 H 0.068 0.932 22 C -0.049 4.049 23 N -0.975 5.975 24 Si 0.933 3.067 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.159 4.159 29 C -0.166 4.166 30 C -0.175 4.175 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.172 0.828 38 H 0.187 0.813 39 H 0.166 0.834 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.031 0.969 45 H 0.359 0.641 46 H 0.259 0.741 47 H 0.121 0.879 48 H 0.093 0.907 49 H 0.119 0.881 50 H 0.115 0.885 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.733 -3.554 -10.538 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 H 0.119 0.881 4 O -0.299 6.299 5 C 0.017 3.983 6 C -0.067 4.067 7 C -0.191 4.191 8 C -0.070 4.070 9 N -0.216 5.216 10 C -0.069 4.069 11 C -0.167 4.167 12 C 0.289 3.711 13 O -0.457 6.457 14 N -0.325 5.325 15 C -0.074 4.074 16 C 0.062 3.938 17 H 0.086 0.914 18 C 0.020 3.980 19 N -0.402 5.402 20 C -0.357 4.357 21 H 0.086 0.914 22 C -0.242 4.242 23 N -0.626 5.626 24 Si 0.762 3.238 25 H -0.191 1.191 26 H -0.218 1.218 27 H -0.210 1.210 28 C -0.179 4.179 29 C -0.203 4.203 30 C -0.212 4.212 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.189 0.811 38 H 0.204 0.796 39 H 0.184 0.816 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.049 0.951 45 H 0.191 0.809 46 H 0.068 0.932 47 H 0.139 0.861 48 H 0.111 0.889 49 H 0.137 0.863 50 H 0.133 0.867 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.969 -4.627 -11.140 25.063 hybrid contribution 0.973 0.384 -0.096 1.050 sum -20.997 -4.244 -11.236 24.189 Atomic orbital electron populations 1.22342 0.89923 1.03972 1.05901 1.22100 0.97650 0.95995 0.83371 0.88065 1.88067 1.87204 1.35147 1.19530 1.21630 1.01885 0.91249 0.83523 1.20224 0.93793 0.97269 0.95409 1.22308 0.96715 1.00540 0.99518 1.23040 1.00660 0.92952 0.90363 1.67711 1.04471 1.20312 1.29074 1.23338 0.91805 0.95088 0.96622 1.22376 1.02159 0.97225 0.94911 1.21139 0.79130 0.85183 0.85635 1.90687 1.42048 1.26186 1.86793 1.47730 1.54973 1.25412 1.04380 1.22223 0.96864 0.84091 1.04249 1.20637 0.93764 0.94899 0.84546 0.91404 1.21305 0.88121 0.96284 0.92307 1.42749 1.29286 1.57604 1.10520 1.19058 1.01727 1.18437 0.96461 0.91388 1.25222 0.97422 1.00367 1.01148 1.69831 1.16363 1.39796 1.36618 0.85732 0.76963 0.78160 0.82912 1.19124 1.21846 1.20952 1.22370 0.98726 1.07093 0.89675 1.23221 1.03870 0.94841 0.98366 1.23059 1.02542 0.96271 0.99366 0.88539 0.92203 0.88048 0.87945 0.92120 0.85099 0.81096 0.79563 0.81613 0.88598 0.90009 0.90664 0.92796 0.95079 0.80899 0.93234 0.86138 0.88906 0.86300 0.86690 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.25 71.98 0.67 -1.77 16 2 C 0.07 1.72 2.32 29.85 0.07 1.78 16 3 H 0.10 2.18 6.78 -2.39 -0.02 2.16 16 4 O -0.38 -10.98 9.51 -129.99 -1.24 -12.21 16 5 C 0.09 1.97 5.92 71.24 0.42 2.39 16 6 C -0.06 -1.34 5.55 -19.67 -0.11 -1.45 16 7 C -0.17 -4.28 9.82 22.36 0.22 -4.06 16 8 C 0.09 2.04 11.18 84.68 0.95 2.99 16 9 N -0.51 -12.19 10.36 -195.84 -2.03 -14.22 16 10 C 0.09 1.67 11.18 84.68 0.95 2.61 16 11 C -0.15 -2.67 9.82 22.36 0.22 -2.45 16 12 C 0.50 16.88 6.80 87.66 0.60 17.48 16 13 O -0.58 -25.80 15.83 15.96 0.25 -25.55 16 14 N -0.59 -17.09 2.24 -822.58 -1.85 -18.94 16 15 C 0.07 1.31 8.29 127.77 1.06 2.37 16 16 C 0.17 5.27 2.59 44.99 0.12 5.38 16 17 H 0.07 2.67 6.90 -2.39 -0.02 2.66 16 18 C 0.15 5.48 4.14 86.38 0.36 5.84 16 19 N -0.76 -36.69 5.24 -343.46 -1.80 -38.48 16 20 C -0.23 -12.96 10.47 84.03 0.88 -12.08 16 21 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 22 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 23 N -0.98 -62.53 13.97 21.65 0.30 -62.23 16 24 Si 0.93 48.19 27.74 68.60 1.90 50.09 16 25 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 26 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 27 H -0.28 -15.04 6.52 99.48 0.65 -14.39 16 28 C -0.16 -3.61 5.48 -10.79 -0.06 -3.67 16 29 C -0.17 -3.20 9.59 30.62 0.29 -2.91 16 30 C -0.17 -3.66 9.94 30.62 0.30 -3.35 16 31 H 0.10 0.91 7.87 -2.39 -0.02 0.89 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.07 5.12 -2.39 -0.01 1.05 16 34 H 0.10 1.35 7.83 -2.39 -0.02 1.34 16 35 H 0.06 1.31 8.04 -2.39 -0.02 1.29 16 36 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 37 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 38 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.10 1.15 7.02 -2.39 -0.02 1.13 16 41 H 0.08 1.38 6.07 -2.39 -0.01 1.36 16 42 H 0.07 1.64 6.53 -2.38 -0.02 1.62 16 43 H 0.05 1.87 5.34 -2.39 -0.01 1.85 16 44 H 0.03 1.22 7.44 -2.39 -0.02 1.20 16 45 H 0.36 18.02 4.93 -92.71 -0.46 17.56 16 46 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 47 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.09 2.10 5.80 -2.39 -0.01 2.09 16 49 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 51 H 0.08 2.00 7.66 -2.39 -0.02 1.98 16 Total: -1.00 -84.23 407.96 3.37 -80.86 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.43 Total: 34.07 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 7.40 Total: 6.60 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -5.37 Total: -133.87 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.98 Total: -37.76 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.90 Total: 50.09 kcal Total: -84.23 3.37 -80.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725466979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.641 kcal (2) G-P(sol) polarization free energy of solvation -84.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds