Wall clock time and date at job start Wed Apr 1 2020 05:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.42906 * 109.46752 * 239.99582 * 2 1 3 5 5 C 1.42899 * 113.99771 * 90.00267 * 4 2 1 6 6 C 1.50695 * 109.47139 * 179.97438 * 5 4 2 7 7 C 1.38650 * 120.78886 * 269.71697 * 6 5 4 8 8 C 1.38203 * 119.16531 * 179.79756 * 7 6 5 9 9 N 1.31875 * 120.75926 * 0.48699 * 8 7 6 10 10 C 1.31868 * 121.72792 * 359.74486 * 9 8 7 11 11 C 1.38203 * 120.76263 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 13 13 O 1.21279 * 120.00449 * 114.99935 * 12 2 1 14 14 N 1.34776 * 119.99626 * 294.99517 * 12 2 1 15 15 C 1.46498 * 120.00551 * 0.02562 * 14 12 2 16 16 C 1.46508 * 120.00166 * 179.97438 * 14 12 2 17 17 H 1.09001 * 109.46698 * 0.02562 * 16 14 12 18 18 C 1.52997 * 109.47560 * 240.00338 * 16 14 12 19 19 N 1.46505 * 109.46928 * 54.99596 * 18 16 14 20 20 C 1.36940 * 119.99642 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00110 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99767 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00090 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46977 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47108 * 119.99610 * 24 22 20 27 27 H 1.48498 * 109.47058 * 239.99760 * 24 22 20 28 28 C 1.53004 * 109.46799 * 119.99983 * 16 14 12 29 29 C 1.52998 * 117.49582 * 248.74832 * 28 16 14 30 30 C 1.53002 * 117.49524 * 180.09100 * 28 16 14 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 33 33 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46938 * 299.99659 * 5 4 2 35 35 H 1.08999 * 109.47317 * 59.99592 * 5 4 2 36 36 H 1.08003 * 120.42074 * 0.02562 * 7 6 5 37 37 H 1.07995 * 119.62351 * 180.21025 * 8 7 6 38 38 H 1.08001 * 119.61734 * 180.02562 * 10 9 8 39 39 H 1.07997 * 120.41763 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47347 * 89.99260 * 15 14 12 41 41 H 1.08991 * 109.47839 * 210.00156 * 15 14 12 42 42 H 1.09006 * 109.46929 * 330.00353 * 15 14 12 43 43 H 1.08990 * 109.47168 * 174.99797 * 18 16 14 44 44 H 1.08998 * 109.46878 * 295.00133 * 18 16 14 45 45 H 0.97000 * 120.00388 * 0.02562 * 19 18 16 46 46 H 0.96996 * 119.99881 * 179.97438 * 23 22 20 47 47 H 1.08997 * 115.54822 * 34.42147 * 28 16 14 48 48 H 1.08996 * 117.50120 * 0.02562 * 29 28 16 49 49 H 1.09007 * 117.49389 * 145.02718 * 29 28 16 50 50 H 1.08997 * 117.49445 * 214.98172 * 30 28 16 51 51 H 1.09004 * 117.49963 * 0.02562 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.2001 0.1828 -2.2941 6 6 2.7013 -0.6284 -3.4610 7 6 4.0604 -0.8067 -3.6698 8 6 4.4829 -1.5605 -4.7484 9 7 3.6106 -2.0985 -5.5783 10 6 2.3112 -1.9460 -5.4134 11 6 1.8147 -1.2092 -4.3548 12 6 2.0324 -0.7104 1.2304 13 8 2.6530 -1.7467 1.1215 14 7 1.7920 -0.1941 2.4519 15 6 1.0419 1.0574 2.5837 16 6 2.2799 -0.8850 3.6483 17 1 2.8104 -1.7905 3.3538 18 6 1.0948 -1.2556 4.5422 19 7 0.1264 -2.0379 3.7698 20 6 -1.0236 -2.4839 4.3647 21 1 -1.2164 -2.2592 5.4033 22 6 -1.9409 -3.2256 3.6331 23 7 -1.7056 -3.4998 2.3674 24 14 -3.5099 -3.8334 4.4443 25 1 -3.5360 -3.3941 5.8627 26 1 -4.6853 -3.2731 3.7304 27 1 -3.5554 -5.3165 4.3850 28 6 3.2302 0.0355 4.4168 29 6 4.7115 -0.3463 4.4486 30 6 3.8520 -0.5078 5.7049 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.2538 0.6545 -2.5589 35 1 2.9319 0.9512 -2.0451 36 1 4.7797 -0.3652 -2.9960 37 1 5.5396 -1.7070 -4.9160 38 1 1.6271 -2.4021 -6.1137 39 1 0.7494 -1.0875 -4.2253 40 1 -0.0220 0.8361 2.6682 41 1 1.3746 1.5883 3.4755 42 1 1.2150 1.6789 1.7050 43 1 1.4479 -1.8465 5.3872 44 1 0.6178 -0.3465 4.9085 45 1 0.2998 -2.2400 2.8371 46 1 -2.3464 -4.0184 1.8563 47 1 2.9846 1.0969 4.3851 48 1 5.0090 -1.2529 3.9217 49 1 5.4404 0.4641 4.4383 50 1 4.0157 0.1964 6.5205 51 1 3.5843 -1.5211 6.0046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725466982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:38 Heat of formation + Delta-G solvation = 8.087954 kcal Electronic energy + Delta-G solvation = -31244.150411 eV Core-core repulsion = 27145.654351 eV Total energy + Delta-G solvation = -4098.496060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.37920 -40.02303 -38.20487 -37.06831 -35.16847 -34.12812 -33.47977 -31.61791 -31.35420 -30.59501 -28.08189 -27.02710 -26.60560 -24.47676 -23.64981 -23.54113 -22.41935 -22.13526 -21.55543 -20.16119 -18.97681 -17.62181 -17.09767 -16.86263 -16.67164 -16.32361 -16.10670 -15.72342 -15.28594 -14.89957 -14.69559 -14.57262 -13.93262 -13.92316 -13.84748 -13.74373 -13.30985 -13.12002 -13.01328 -12.93394 -12.50315 -12.27745 -12.21144 -12.01187 -11.76939 -11.53018 -11.48917 -11.42058 -11.13016 -11.05528 -10.83935 -10.70528 -10.33023 -10.10341 -9.96404 -9.83428 -9.80609 -9.64396 -9.63823 -9.28623 -9.14089 -8.85161 -8.24102 -6.88132 -5.71488 -3.01139 0.98559 1.00232 2.90310 3.03182 3.43803 3.49418 3.51975 3.57794 3.89459 4.02243 4.32116 4.51450 4.52112 4.58687 4.73223 4.82755 4.84584 4.90510 4.96732 5.02401 5.08059 5.11079 5.16737 5.24844 5.30117 5.38206 5.46493 5.58645 5.62824 5.63312 5.71213 5.73920 5.79107 5.79970 5.85721 5.92332 5.99598 6.08542 6.15630 6.21927 6.24807 6.32333 6.48220 6.52950 6.54041 6.74137 6.90068 7.09493 7.70994 7.72748 7.80974 8.45572 8.56839 9.57280 10.15724 10.51303 11.50275 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008683 B = 0.003175 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.040948 B = 8815.495275 C =11067.653985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.079 0.921 4 O -0.346 6.346 5 C 0.098 3.902 6 C -0.041 4.041 7 C -0.150 4.150 8 C 0.094 3.906 9 N -0.484 5.484 10 C 0.095 3.905 11 C -0.149 4.149 12 C 0.521 3.479 13 O -0.518 6.518 14 N -0.593 5.593 15 C 0.076 3.924 16 C 0.164 3.836 17 H 0.100 0.900 18 C 0.149 3.851 19 N -0.728 5.728 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.926 5.926 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.159 4.159 29 C -0.179 4.179 30 C -0.170 4.170 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.138 0.862 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.021 0.979 45 H 0.386 0.614 46 H 0.254 0.746 47 H 0.105 0.895 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.893 14.825 -7.997 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.017 3.983 3 H 0.097 0.903 4 O -0.264 6.264 5 C 0.021 3.979 6 C -0.049 4.049 7 C -0.170 4.170 8 C -0.063 4.063 9 N -0.194 5.194 10 C -0.062 4.062 11 C -0.169 4.169 12 C 0.307 3.693 13 O -0.392 6.392 14 N -0.327 5.327 15 C -0.067 4.067 16 C 0.061 3.939 17 H 0.118 0.882 18 C 0.020 3.980 19 N -0.373 5.373 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.575 5.575 24 Si 0.735 3.265 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.178 4.178 29 C -0.216 4.216 30 C -0.207 4.207 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.153 0.847 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.155 0.845 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.039 0.961 45 H 0.221 0.779 46 H 0.064 0.936 47 H 0.123 0.877 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.112 0.888 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.432 13.537 -8.658 19.721 hybrid contribution -1.374 0.414 0.961 1.726 sum 10.058 13.951 -7.697 18.843 Atomic orbital electron populations 1.22367 0.92637 1.05608 1.02880 1.21903 0.95816 0.95317 0.85278 0.90294 1.88164 1.86585 1.33288 1.18385 1.21382 0.99900 0.91634 0.84947 1.19980 0.93648 0.96656 0.94642 1.22087 0.95854 1.00032 0.99038 1.22750 0.99647 0.93221 0.90642 1.67657 1.03415 1.19561 1.28718 1.22770 0.91933 0.95321 0.96152 1.22118 1.01189 0.97999 0.95615 1.20139 0.79747 0.85429 0.83953 1.90711 1.39940 1.22686 1.85857 1.47468 1.55263 1.24728 1.05225 1.21886 0.97581 0.85423 1.01841 1.20908 0.94602 0.94434 0.83995 0.88175 1.20921 0.89061 0.94709 0.93301 1.42317 1.20095 1.63048 1.11812 1.19226 0.95819 1.27004 0.95033 0.91300 1.24735 0.98929 1.01156 0.95988 1.69700 1.36544 1.43977 1.07255 0.86170 0.83638 0.78397 0.78275 1.20664 1.21972 1.21929 1.22546 0.94479 0.99969 1.00848 1.23017 0.93306 1.03292 1.01983 1.22928 1.03732 1.02897 0.91172 0.89981 0.92039 0.89683 0.91755 0.92081 0.84660 0.82637 0.82552 0.84459 0.91160 0.91169 0.91858 0.95408 0.96110 0.77927 0.93634 0.87704 0.88672 0.89214 0.88845 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.25 37.16 0.34 -2.22 16 2 C 0.08 1.13 2.32 -27.88 -0.06 1.07 16 3 H 0.08 0.85 6.78 -51.93 -0.35 0.50 16 4 O -0.35 -5.48 9.51 -55.09 -0.52 -6.01 16 5 C 0.10 1.09 5.92 36.00 0.21 1.30 16 6 C -0.04 -0.48 5.55 -104.32 -0.58 -1.06 16 7 C -0.15 -1.64 9.82 -39.44 -0.39 -2.03 16 8 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 9 N -0.48 -6.00 10.36 -13.25 -0.14 -6.13 16 10 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 11 C -0.15 -1.66 9.82 -39.44 -0.39 -2.04 16 12 C 0.52 9.56 6.80 -10.99 -0.07 9.48 16 13 O -0.52 -11.87 15.83 -14.30 -0.23 -12.10 16 14 N -0.59 -9.61 2.24 -173.93 -0.39 -10.00 16 15 C 0.08 0.94 8.05 59.85 0.48 1.42 16 16 C 0.16 2.81 2.42 -67.93 -0.16 2.64 16 17 H 0.10 2.02 6.66 -51.93 -0.35 1.68 16 18 C 0.15 2.98 5.32 -4.04 -0.02 2.95 16 19 N -0.73 -18.60 5.43 -59.91 -0.33 -18.92 16 20 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 24 Si 0.90 22.50 29.55 -169.99 -5.02 17.48 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 C -0.16 -2.09 5.15 -90.62 -0.47 -2.55 16 29 C -0.18 -2.16 10.18 -26.69 -0.27 -2.43 16 30 C -0.17 -2.02 9.80 -26.69 -0.26 -2.28 16 31 H 0.08 1.13 5.12 -51.93 -0.27 0.87 16 32 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 33 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 34 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 35 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 36 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.07 1.00 7.02 -51.93 -0.36 0.64 16 41 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 42 H 0.06 0.59 6.07 -51.93 -0.32 0.28 16 43 H 0.03 0.57 7.48 -51.93 -0.39 0.18 16 44 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 45 H 0.39 10.78 7.07 -40.82 -0.29 10.49 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.10 1.21 6.59 -51.93 -0.34 0.87 16 48 H 0.09 1.26 8.05 -51.93 -0.42 0.85 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.10 1.27 7.67 -51.93 -0.40 0.87 16 LS Contribution 414.87 15.07 6.25 6.25 Total: -1.00 -36.29 414.87 -9.89 -46.17 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -7.96 Total: 12.20 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.28 Total: -1.34 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.13 Total: -62.67 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.75 Total: -18.10 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.29 -9.89 -46.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725466982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.261 kcal (2) G-P(sol) polarization free energy of solvation -36.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds