Wall clock time and date at job start Wed Apr 1 2020 05:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.42906 * 109.46752 * 239.99582 * 2 1 3 5 5 C 1.42899 * 113.99771 * 90.00267 * 4 2 1 6 6 C 1.50695 * 109.47139 * 179.97438 * 5 4 2 7 7 C 1.38650 * 120.78886 * 269.71697 * 6 5 4 8 8 C 1.38203 * 119.16531 * 179.79756 * 7 6 5 9 9 N 1.31875 * 120.75926 * 0.48699 * 8 7 6 10 10 C 1.31868 * 121.72792 * 359.74486 * 9 8 7 11 11 C 1.38203 * 120.76263 * 0.02562 * 10 9 8 12 12 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 13 13 O 1.21279 * 120.00449 * 114.99935 * 12 2 1 14 14 N 1.34776 * 119.99626 * 294.99517 * 12 2 1 15 15 C 1.46498 * 120.00551 * 0.02562 * 14 12 2 16 16 C 1.46508 * 120.00166 * 179.97438 * 14 12 2 17 17 H 1.09001 * 109.46698 * 0.02562 * 16 14 12 18 18 C 1.52997 * 109.47560 * 240.00338 * 16 14 12 19 19 N 1.46505 * 109.46928 * 54.99596 * 18 16 14 20 20 C 1.36940 * 119.99642 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00110 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99767 * 180.02562 * 20 19 18 23 23 N 1.31626 * 120.00090 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46977 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47108 * 119.99610 * 24 22 20 27 27 H 1.48498 * 109.47058 * 239.99760 * 24 22 20 28 28 C 1.53004 * 109.46799 * 119.99983 * 16 14 12 29 29 C 1.52998 * 117.49582 * 248.74832 * 28 16 14 30 30 C 1.53002 * 117.49524 * 180.09100 * 28 16 14 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 33 33 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46938 * 299.99659 * 5 4 2 35 35 H 1.08999 * 109.47317 * 59.99592 * 5 4 2 36 36 H 1.08003 * 120.42074 * 0.02562 * 7 6 5 37 37 H 1.07995 * 119.62351 * 180.21025 * 8 7 6 38 38 H 1.08001 * 119.61734 * 180.02562 * 10 9 8 39 39 H 1.07997 * 120.41763 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47347 * 89.99260 * 15 14 12 41 41 H 1.08991 * 109.47839 * 210.00156 * 15 14 12 42 42 H 1.09006 * 109.46929 * 330.00353 * 15 14 12 43 43 H 1.08990 * 109.47168 * 174.99797 * 18 16 14 44 44 H 1.08998 * 109.46878 * 295.00133 * 18 16 14 45 45 H 0.97000 * 120.00388 * 0.02562 * 19 18 16 46 46 H 0.96996 * 119.99881 * 179.97438 * 23 22 20 47 47 H 1.08997 * 115.54822 * 34.42147 * 28 16 14 48 48 H 1.08996 * 117.50120 * 0.02562 * 29 28 16 49 49 H 1.09007 * 117.49389 * 145.02718 * 29 28 16 50 50 H 1.08997 * 117.49445 * 214.98172 * 30 28 16 51 51 H 1.09004 * 117.49963 * 0.02562 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1668 5 6 2.2001 0.1828 -2.2941 6 6 2.7013 -0.6284 -3.4610 7 6 4.0604 -0.8067 -3.6698 8 6 4.4829 -1.5605 -4.7484 9 7 3.6106 -2.0985 -5.5783 10 6 2.3112 -1.9460 -5.4134 11 6 1.8147 -1.2092 -4.3548 12 6 2.0324 -0.7104 1.2304 13 8 2.6530 -1.7467 1.1215 14 7 1.7920 -0.1941 2.4519 15 6 1.0419 1.0574 2.5837 16 6 2.2799 -0.8850 3.6483 17 1 2.8104 -1.7905 3.3538 18 6 1.0948 -1.2556 4.5422 19 7 0.1264 -2.0379 3.7698 20 6 -1.0236 -2.4839 4.3647 21 1 -1.2164 -2.2592 5.4033 22 6 -1.9409 -3.2256 3.6331 23 7 -1.7056 -3.4998 2.3674 24 14 -3.5099 -3.8334 4.4443 25 1 -3.5360 -3.3941 5.8627 26 1 -4.6853 -3.2731 3.7304 27 1 -3.5554 -5.3165 4.3850 28 6 3.2302 0.0355 4.4168 29 6 4.7115 -0.3463 4.4486 30 6 3.8520 -0.5078 5.7049 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.2538 0.6545 -2.5589 35 1 2.9319 0.9512 -2.0451 36 1 4.7797 -0.3652 -2.9960 37 1 5.5396 -1.7070 -4.9160 38 1 1.6271 -2.4021 -6.1137 39 1 0.7494 -1.0875 -4.2253 40 1 -0.0220 0.8361 2.6682 41 1 1.3746 1.5883 3.4755 42 1 1.2150 1.6789 1.7050 43 1 1.4479 -1.8465 5.3872 44 1 0.6178 -0.3465 4.9085 45 1 0.2998 -2.2400 2.8371 46 1 -2.3464 -4.0184 1.8563 47 1 2.9846 1.0969 4.3851 48 1 5.0090 -1.2529 3.9217 49 1 5.4404 0.4641 4.4383 50 1 4.0157 0.1964 6.5205 51 1 3.5843 -1.5211 6.0046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725466982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:37 Heat of formation + Delta-G solvation = -15.234353 kcal Electronic energy + Delta-G solvation = -31245.161742 eV Core-core repulsion = 27145.654351 eV Total energy + Delta-G solvation = -4099.507391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47361 -41.06330 -39.32839 -38.26873 -36.59635 -35.86411 -34.43841 -33.30266 -32.16411 -32.05436 -29.63676 -28.01406 -27.69161 -26.21647 -24.96088 -24.42737 -23.65394 -22.98066 -22.88782 -21.35602 -20.31462 -19.14719 -18.69322 -17.95937 -17.60649 -17.37940 -17.17429 -16.67348 -16.57631 -16.50600 -15.95469 -15.67492 -15.39954 -15.26417 -14.88244 -14.77421 -14.67451 -14.53784 -14.25242 -14.18863 -13.73462 -13.52446 -13.41158 -13.13880 -13.01480 -12.89993 -12.77738 -12.73923 -12.44214 -12.38892 -12.26106 -12.18139 -12.06010 -11.77491 -11.31317 -11.03144 -10.95491 -10.90179 -10.75802 -10.49051 -10.42082 -10.10359 -9.56698 -8.99451 -7.92240 -5.22782 0.12312 0.18325 1.44897 1.46843 1.56493 1.58866 1.82553 2.54303 2.63927 2.90388 3.08220 3.40277 3.46953 3.56831 3.63636 3.71287 3.76152 3.87487 3.98539 4.04386 4.08887 4.10552 4.14601 4.18854 4.31858 4.36393 4.38176 4.42641 4.44659 4.56226 4.65155 4.68175 4.74488 4.77434 4.79817 4.86839 4.89212 4.97198 4.98557 5.05436 5.09062 5.27195 5.30050 5.30213 5.34422 5.48225 5.63424 5.73799 6.04220 6.26353 6.46039 6.97736 7.22435 7.33252 8.08976 8.32657 9.30327 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008683 B = 0.003175 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.040948 B = 8815.495275 C =11067.653985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 H 0.130 0.870 4 O -0.384 6.384 5 C 0.094 3.906 6 C -0.060 4.060 7 C -0.157 4.157 8 C 0.084 3.916 9 N -0.509 5.509 10 C 0.084 3.916 11 C -0.159 4.159 12 C 0.506 3.494 13 O -0.580 6.580 14 N -0.589 5.589 15 C 0.068 3.932 16 C 0.170 3.830 17 H 0.058 0.942 18 C 0.149 3.851 19 N -0.741 5.741 20 C -0.241 4.241 21 H 0.078 0.922 22 C -0.074 4.074 23 N -0.966 5.966 24 Si 0.972 3.028 25 H -0.264 1.264 26 H -0.291 1.291 27 H -0.300 1.300 28 C -0.162 4.162 29 C -0.174 4.174 30 C -0.163 4.163 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.152 0.848 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.151 0.849 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.025 0.975 44 H 0.039 0.961 45 H 0.371 0.629 46 H 0.248 0.752 47 H 0.134 0.866 48 H 0.072 0.928 49 H 0.118 0.882 50 H 0.123 0.877 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.088 18.186 -6.979 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.026 3.974 3 H 0.147 0.853 4 O -0.303 6.303 5 C 0.018 3.982 6 C -0.068 4.068 7 C -0.177 4.177 8 C -0.072 4.072 9 N -0.219 5.219 10 C -0.073 4.073 11 C -0.179 4.179 12 C 0.294 3.706 13 O -0.459 6.459 14 N -0.322 5.322 15 C -0.073 4.073 16 C 0.066 3.934 17 H 0.076 0.924 18 C 0.022 3.978 19 N -0.384 5.384 20 C -0.372 4.372 21 H 0.096 0.904 22 C -0.267 4.267 23 N -0.617 5.617 24 Si 0.802 3.198 25 H -0.188 1.188 26 H -0.218 1.218 27 H -0.227 1.227 28 C -0.181 4.181 29 C -0.211 4.211 30 C -0.200 4.200 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.170 0.830 37 H 0.196 0.804 38 H 0.195 0.805 39 H 0.168 0.832 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.043 0.957 44 H 0.057 0.943 45 H 0.202 0.798 46 H 0.057 0.943 47 H 0.151 0.849 48 H 0.091 0.909 49 H 0.136 0.864 50 H 0.141 0.859 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.627 16.964 -7.583 21.919 hybrid contribution -1.377 -0.643 0.670 1.661 sum 10.251 16.320 -6.913 20.475 Atomic orbital electron populations 1.22292 0.92825 1.02483 1.04950 1.21912 0.95295 0.96835 0.83383 0.85300 1.88129 1.86790 1.35674 1.19710 1.21649 1.01840 0.91421 0.83269 1.20278 0.94204 0.97207 0.95124 1.22349 0.96123 0.99962 0.99257 1.23194 1.00702 0.92871 0.90456 1.67689 1.04151 1.20403 1.29625 1.23171 0.92048 0.95352 0.96692 1.22360 1.01977 0.97925 0.95621 1.21052 0.78892 0.84953 0.85656 1.90670 1.42934 1.25460 1.86873 1.47600 1.54730 1.25484 1.04356 1.22174 0.95891 0.84174 1.05081 1.20650 0.93815 0.94499 0.84397 0.92388 1.21088 0.89153 0.94349 0.93232 1.42531 1.20653 1.63738 1.11470 1.19642 0.96312 1.25973 0.95318 0.90424 1.25569 1.02413 1.02128 0.96563 1.69894 1.37625 1.45298 1.08888 0.85088 0.79574 0.77017 0.78141 1.18774 1.21816 1.22740 1.22457 0.94123 1.00262 1.01235 1.23037 0.93149 1.03231 1.01642 1.23012 1.02737 1.02676 0.91584 0.89338 0.88490 0.95283 0.89545 0.89507 0.83019 0.80353 0.80534 0.83166 0.93185 0.88546 0.88006 0.95713 0.94265 0.79767 0.94344 0.84866 0.90944 0.86426 0.85910 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 9.25 71.98 0.67 -4.10 16 2 C 0.09 2.40 2.32 29.85 0.07 2.47 16 3 H 0.13 2.24 6.78 -2.39 -0.02 2.23 16 4 O -0.38 -12.04 9.51 -129.99 -1.24 -13.27 16 5 C 0.09 1.90 5.92 71.23 0.42 2.33 16 6 C -0.06 -1.36 5.55 -19.67 -0.11 -1.47 16 7 C -0.16 -3.33 9.82 22.36 0.22 -3.11 16 8 C 0.08 1.80 11.18 84.68 0.95 2.75 16 9 N -0.51 -12.57 10.36 -195.84 -2.03 -14.60 16 10 C 0.08 1.84 11.18 84.68 0.95 2.79 16 11 C -0.16 -3.48 9.82 22.36 0.22 -3.26 16 12 C 0.51 18.93 6.80 87.66 0.60 19.52 16 13 O -0.58 -28.30 15.83 15.96 0.25 -28.05 16 14 N -0.59 -18.83 2.24 -822.58 -1.85 -20.68 16 15 C 0.07 1.51 8.05 127.77 1.03 2.54 16 16 C 0.17 5.89 2.42 44.99 0.11 6.00 16 17 H 0.06 2.50 6.66 -2.39 -0.02 2.49 16 18 C 0.15 5.98 5.32 86.38 0.46 6.44 16 19 N -0.74 -38.93 5.43 -343.46 -1.87 -40.80 16 20 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 23 N -0.97 -61.38 13.06 21.65 0.28 -61.10 16 24 Si 0.97 46.92 29.55 68.60 2.03 48.94 16 25 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 28 C -0.16 -3.91 5.15 -10.79 -0.06 -3.96 16 29 C -0.17 -3.89 10.18 30.62 0.31 -3.58 16 30 C -0.16 -3.53 9.80 30.62 0.30 -3.23 16 31 H 0.09 2.35 5.12 -2.39 -0.01 2.33 16 32 H 0.10 2.00 7.87 -2.39 -0.02 1.98 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.33 7.83 -2.39 -0.02 1.31 16 35 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 36 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.05 1.35 7.02 -2.39 -0.02 1.33 16 41 H 0.10 1.63 6.43 -2.39 -0.02 1.62 16 42 H 0.10 1.46 6.07 -2.38 -0.01 1.44 16 43 H 0.03 1.02 7.48 -2.39 -0.02 1.00 16 44 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 45 H 0.37 21.73 7.07 -92.71 -0.65 21.08 16 46 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.13 2.50 6.59 -2.39 -0.02 2.48 16 48 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 49 H 0.12 2.00 8.14 -2.38 -0.02 1.99 16 50 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.08 2.06 7.67 -2.38 -0.02 2.04 16 Total: -1.00 -85.11 414.87 3.30 -81.80 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: 0.28 Total: 42.28 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 7.44 Total: 5.47 kcal Atomic # 7 Polarization: -131.71 SS G_CDS: -5.46 Total: -137.17 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.98 Total: -41.32 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -85.11 3.30 -81.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725466982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.568 kcal (2) G-P(sol) polarization free energy of solvation -85.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds