Wall clock time and date at job start Wed Apr 1 2020 04:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47246 * 2 1 4 4 O 1.42892 * 109.47005 * 120.00729 * 2 1 3 5 5 C 1.42903 * 114.00084 * 269.99649 * 4 2 1 6 6 C 1.50695 * 109.47715 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78804 * 269.72193 * 6 5 4 8 8 C 1.38202 * 119.15867 * 179.75105 * 7 6 5 9 9 N 1.31874 * 120.76592 * 0.53216 * 8 7 6 10 10 C 1.31865 * 121.72735 * 359.74154 * 9 8 7 11 11 C 1.38208 * 120.76165 * 359.97362 * 10 9 8 12 12 C 1.50700 * 109.46766 * 240.00509 * 2 1 3 13 13 O 1.21285 * 119.99744 * 256.04770 * 12 2 1 14 14 N 1.34775 * 120.00492 * 76.04801 * 12 2 1 15 15 C 1.46926 * 120.63462 * 174.94555 * 14 12 2 16 16 C 1.53191 * 108.77668 * 233.58617 * 15 14 12 17 17 C 1.53040 * 109.31080 * 305.36591 * 16 15 14 18 18 C 1.53037 * 109.53871 * 61.36284 * 17 16 15 19 19 H 1.09000 * 109.49938 * 58.59191 * 18 17 16 20 20 N 1.46504 * 109.49526 * 178.68277 * 18 17 16 21 21 C 1.46505 * 119.99999 * 60.00146 * 20 18 17 22 22 C 1.36939 * 119.99818 * 239.99956 * 20 18 17 23 23 H 1.07997 * 120.00020 * 21.39222 * 22 20 18 24 24 C 1.38816 * 119.99743 * 201.39204 * 22 20 18 25 25 N 1.31615 * 120.00116 * 11.86075 * 24 22 20 26 26 Si 1.86802 * 119.99833 * 191.86502 * 24 22 20 27 27 H 1.48498 * 109.47193 * 94.96550 * 26 24 22 28 28 H 1.48505 * 109.46955 * 214.96965 * 26 24 22 29 29 H 1.48501 * 109.46985 * 334.96441 * 26 24 22 30 30 C 1.46931 * 120.62826 * 354.91994 * 14 12 2 31 31 H 1.08999 * 109.46685 * 306.34218 * 1 2 3 32 32 H 1.08998 * 109.47126 * 66.33932 * 1 2 3 33 33 H 1.08998 * 109.47233 * 186.33794 * 1 2 3 34 34 H 1.09001 * 109.46671 * 300.00541 * 5 4 2 35 35 H 1.09003 * 109.46796 * 59.99507 * 5 4 2 36 36 H 1.08001 * 120.41865 * 359.97438 * 7 6 5 37 37 H 1.08007 * 119.61652 * 180.24521 * 8 7 6 38 38 H 1.07997 * 119.61795 * 180.02562 * 10 9 8 39 39 H 1.08004 * 120.41531 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.58723 * 113.79459 * 15 14 12 41 41 H 1.09005 * 109.70376 * 353.44208 * 15 14 12 42 42 H 1.08997 * 109.49749 * 185.41383 * 16 15 14 43 43 H 1.08996 * 109.49612 * 65.31438 * 16 15 14 44 44 H 1.08999 * 109.45823 * 301.34036 * 17 16 15 45 45 H 1.09001 * 109.45881 * 181.38617 * 17 16 15 46 46 H 1.08997 * 109.46990 * 94.53233 * 21 20 18 47 47 H 1.08996 * 109.46680 * 214.52807 * 21 20 18 48 48 H 1.08991 * 109.46871 * 334.52728 * 21 20 18 49 49 H 0.96999 * 120.00154 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58324 * 6.62725 * 30 14 12 51 51 H 1.08990 * 109.58627 * 246.20411 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 2.2001 0.1827 2.2941 6 6 2.7014 -0.6285 3.4609 7 6 1.8149 -1.2046 4.3579 8 6 2.3113 -1.9461 5.4132 9 7 3.6107 -2.0995 5.5776 10 6 4.4829 -1.5615 4.7477 11 6 4.0603 -0.8117 3.6664 12 6 2.0323 -0.7103 -1.2306 13 8 2.4731 -1.8368 -1.1430 14 7 1.9916 -0.0939 -2.4284 15 6 2.5775 -0.7282 -3.6171 16 6 3.5630 0.2506 -4.2631 17 6 2.8498 1.5751 -4.5445 18 6 2.3592 2.1820 -3.2281 19 1 3.2069 2.3377 -2.5609 20 7 1.7043 3.4650 -3.4952 21 6 0.5298 3.5199 -4.3693 22 6 2.1899 4.6128 -2.9279 23 1 3.2123 4.6537 -2.5824 24 6 1.3680 5.7238 -2.7968 25 7 0.0720 5.6108 -2.9965 26 14 2.1014 7.3791 -2.3372 27 1 2.3678 8.1621 -3.5705 28 1 1.1463 8.1217 -1.4759 29 1 3.3731 7.1694 -1.5995 30 6 1.3599 1.2251 -2.5704 31 1 -0.3633 0.6090 0.8278 32 1 -0.3633 0.4124 -0.9413 33 1 -0.3633 -1.0214 0.1134 34 1 2.9320 0.9511 2.0450 35 1 1.2538 0.6545 2.5588 36 1 0.7497 -1.0785 4.2313 37 1 1.6272 -2.4016 6.1140 38 1 5.5397 -1.7092 4.9145 39 1 4.7796 -0.3740 2.9899 40 1 1.7877 -0.9735 -4.3271 41 1 3.1033 -1.6379 -3.3268 42 1 3.9326 -0.1695 -5.1985 43 1 4.3995 0.4245 -3.5862 44 1 1.9987 1.3967 -5.2017 45 1 3.5423 2.2651 -5.0267 46 1 -0.3757 3.4714 -3.7646 47 1 0.5403 4.4524 -4.9336 48 1 0.5512 2.6770 -5.0599 49 1 -0.5023 6.3872 -2.9052 50 1 1.0828 1.6052 -1.5871 51 1 0.4709 1.1391 -3.1950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731713734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:56 Heat of formation + Delta-G solvation = -14.734759 kcal Electronic energy + Delta-G solvation = -31285.201282 eV Core-core repulsion = 27185.715555 eV Total energy + Delta-G solvation = -4099.485727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.47097 -40.15148 -38.19078 -37.17707 -34.99239 -33.73093 -32.74603 -31.68785 -31.42047 -30.63912 -28.74765 -27.07056 -26.13068 -25.64776 -23.76110 -23.66082 -23.45116 -22.20722 -21.45562 -19.74807 -18.80150 -17.66975 -17.01764 -16.75585 -16.70466 -16.40836 -15.82747 -15.64128 -15.29058 -15.05567 -14.56396 -14.33555 -14.09556 -13.99338 -13.86246 -13.69249 -13.63426 -13.18954 -12.93180 -12.78472 -12.69693 -12.34929 -12.18825 -12.11225 -11.92324 -11.73616 -11.35415 -11.23417 -11.07238 -10.89404 -10.62109 -10.52887 -10.42901 -10.36110 -10.05056 -9.93099 -9.91908 -9.85362 -9.70707 -9.35737 -9.32165 -8.69670 -8.39633 -6.90501 -5.84409 -3.30695 0.91994 0.93487 2.70226 2.88421 3.29887 3.37205 3.38014 3.51848 3.89020 4.25065 4.34826 4.46229 4.48343 4.64218 4.84576 4.88875 4.91680 4.99897 5.12220 5.15082 5.17887 5.18858 5.22216 5.33542 5.40617 5.47148 5.56322 5.57041 5.60371 5.62831 5.66408 5.74276 5.85150 5.92329 6.03774 6.08873 6.11880 6.11993 6.27609 6.30665 6.46822 6.61099 6.67685 6.74557 6.83311 6.94207 7.29885 7.56720 7.60538 7.70607 7.74152 8.26164 8.33426 9.11267 9.73601 10.21454 11.19810 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.002909 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.744657 B = 9623.122980 C =11296.083121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.092 0.908 4 O -0.352 6.352 5 C 0.095 3.905 6 C -0.040 4.040 7 C -0.151 4.151 8 C 0.094 3.906 9 N -0.484 5.484 10 C 0.095 3.905 11 C -0.150 4.150 12 C 0.520 3.480 13 O -0.534 6.534 14 N -0.604 5.604 15 C 0.115 3.885 16 C -0.130 4.130 17 C -0.134 4.134 18 C 0.168 3.832 19 H 0.065 0.935 20 N -0.593 5.593 21 C 0.161 3.839 22 C -0.257 4.257 23 H 0.069 0.931 24 C 0.004 3.996 25 N -0.906 5.906 26 Si 0.905 3.095 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 C 0.086 3.914 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.029 0.971 47 H 0.046 0.954 48 H -0.001 1.001 49 H 0.253 0.747 50 H 0.084 0.916 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 -11.428 7.692 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.110 0.890 4 O -0.270 6.270 5 C 0.019 3.981 6 C -0.048 4.048 7 C -0.171 4.171 8 C -0.063 4.063 9 N -0.194 5.194 10 C -0.062 4.062 11 C -0.169 4.169 12 C 0.306 3.694 13 O -0.411 6.411 14 N -0.339 5.339 15 C -0.007 4.007 16 C -0.169 4.169 17 C -0.173 4.173 18 C 0.058 3.942 19 H 0.084 0.916 20 N -0.315 5.315 21 C 0.016 3.984 22 C -0.387 4.387 23 H 0.087 0.913 24 C -0.194 4.194 25 N -0.551 5.551 26 Si 0.735 3.265 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.204 1.204 30 C -0.038 4.038 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.155 0.845 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.047 0.953 47 H 0.065 0.935 48 H 0.018 0.982 49 H 0.063 0.937 50 H 0.103 0.897 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.934 -12.548 8.457 15.414 hybrid contribution -0.213 1.931 -0.591 2.031 sum 2.721 -10.617 7.866 13.491 Atomic orbital electron populations 1.22274 0.93236 1.03541 1.03888 1.21955 0.95501 0.96559 0.85025 0.89048 1.88072 1.86682 1.33653 1.18568 1.21442 1.00476 0.91640 0.84555 1.19997 0.93662 0.96414 0.94716 1.22100 1.01079 0.98185 0.95757 1.22759 0.91966 0.95477 0.96095 1.67658 1.03391 1.19773 1.28558 1.22767 0.99682 0.93210 0.90510 1.22136 0.95943 0.99771 0.99095 1.20251 0.78640 0.86341 0.84145 1.90668 1.46367 1.18337 1.85714 1.48212 1.57722 1.20324 1.07669 1.21562 0.96508 0.96454 0.86225 1.21905 0.98271 0.96314 1.00408 1.22086 1.00064 0.95342 0.99823 1.20636 0.94057 0.85690 0.93808 0.91641 1.43953 1.33028 1.01184 1.53309 1.20818 0.89120 0.96842 0.91583 1.19242 0.94666 0.89484 1.35270 0.91326 1.24998 0.95070 0.98964 1.00392 1.70064 1.02294 1.28959 1.53792 0.86239 0.78164 0.84139 0.77999 1.21487 1.21714 1.20449 1.22817 0.97445 0.80866 1.02653 0.91145 0.90219 0.91167 0.91484 0.91495 0.84556 0.82612 0.82561 0.84499 0.91746 0.89525 0.91195 0.91825 0.92175 0.91639 0.95296 0.93547 0.98226 0.93666 0.89741 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 9.13 37.16 0.34 -1.76 16 2 C 0.07 0.99 2.28 -27.88 -0.06 0.93 16 3 H 0.09 1.23 6.68 -51.93 -0.35 0.88 16 4 O -0.35 -5.10 9.55 -54.61 -0.52 -5.62 16 5 C 0.10 1.07 5.92 36.00 0.21 1.29 16 6 C -0.04 -0.44 5.55 -104.32 -0.58 -1.02 16 7 C -0.15 -1.52 9.82 -39.44 -0.39 -1.91 16 8 C 0.09 0.94 11.18 -17.55 -0.20 0.74 16 9 N -0.48 -5.61 10.36 -13.25 -0.14 -5.75 16 10 C 0.10 0.98 11.18 -17.55 -0.20 0.79 16 11 C -0.15 -1.59 9.82 -39.44 -0.39 -1.98 16 12 C 0.52 8.50 7.00 -10.99 -0.08 8.42 16 13 O -0.53 -10.43 16.02 -13.83 -0.22 -10.65 16 14 N -0.60 -9.18 2.97 -172.77 -0.51 -9.69 16 15 C 0.11 1.57 6.41 -3.71 -0.02 1.55 16 16 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 17 C -0.13 -2.09 5.13 -26.69 -0.14 -2.22 16 18 C 0.17 3.04 2.74 -67.81 -0.19 2.85 16 19 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 20 N -0.59 -13.31 2.82 -173.35 -0.49 -13.80 16 21 C 0.16 3.59 7.90 59.85 0.47 4.06 16 22 C -0.26 -6.49 9.62 -15.06 -0.14 -6.63 16 23 H 0.07 1.71 7.80 -52.49 -0.41 1.30 16 24 C 0.00 0.11 5.12 -17.43 -0.09 0.02 16 25 N -0.91 -24.53 10.55 55.49 0.59 -23.95 16 26 Si 0.90 20.64 29.57 -169.99 -5.03 15.62 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 C 0.09 1.39 4.69 -3.71 -0.02 1.37 16 31 H 0.07 0.74 8.03 -51.93 -0.42 0.33 16 32 H 0.08 1.00 6.38 -51.93 -0.33 0.66 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.07 0.64 7.99 -51.93 -0.41 0.23 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.23 7.05 -51.93 -0.37 0.86 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.94 6.72 -51.93 -0.35 0.59 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.03 0.69 7.42 -51.93 -0.39 0.31 16 47 H 0.05 1.15 7.16 -51.93 -0.37 0.77 16 48 H 0.00 -0.01 6.46 -51.93 -0.34 -0.35 16 49 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 50 H 0.08 1.38 4.86 -51.93 -0.25 1.12 16 51 H 0.07 1.12 7.51 -51.93 -0.39 0.73 16 LS Contribution 403.93 15.07 6.09 6.09 Total: -1.00 -31.36 403.93 -9.99 -41.35 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.13 Total: 1.75 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.62 Total: 4.64 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.55 Total: -53.18 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.74 Total: -16.28 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.36 -9.99 -41.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731713734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.620 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds