Wall clock time and date at job start Wed Apr 1 2020 04:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47246 * 2 1 4 4 O 1.42892 * 109.47005 * 120.00729 * 2 1 3 5 5 C 1.42903 * 114.00084 * 269.99649 * 4 2 1 6 6 C 1.50695 * 109.47715 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78804 * 269.72193 * 6 5 4 8 8 C 1.38202 * 119.15867 * 179.75105 * 7 6 5 9 9 N 1.31874 * 120.76592 * 0.53216 * 8 7 6 10 10 C 1.31865 * 121.72735 * 359.74154 * 9 8 7 11 11 C 1.38208 * 120.76165 * 359.97362 * 10 9 8 12 12 C 1.50700 * 109.46766 * 240.00509 * 2 1 3 13 13 O 1.21285 * 119.99744 * 256.04770 * 12 2 1 14 14 N 1.34775 * 120.00492 * 76.04801 * 12 2 1 15 15 C 1.46926 * 120.63462 * 174.94555 * 14 12 2 16 16 C 1.53191 * 108.77668 * 233.58617 * 15 14 12 17 17 C 1.53040 * 109.31080 * 305.36591 * 16 15 14 18 18 C 1.53037 * 109.53871 * 61.36284 * 17 16 15 19 19 H 1.09000 * 109.49938 * 58.59191 * 18 17 16 20 20 N 1.46504 * 109.49526 * 178.68277 * 18 17 16 21 21 C 1.46505 * 119.99999 * 60.00146 * 20 18 17 22 22 C 1.36939 * 119.99818 * 239.99956 * 20 18 17 23 23 H 1.07997 * 120.00020 * 21.39222 * 22 20 18 24 24 C 1.38816 * 119.99743 * 201.39204 * 22 20 18 25 25 N 1.31615 * 120.00116 * 11.86075 * 24 22 20 26 26 Si 1.86802 * 119.99833 * 191.86502 * 24 22 20 27 27 H 1.48498 * 109.47193 * 94.96550 * 26 24 22 28 28 H 1.48505 * 109.46955 * 214.96965 * 26 24 22 29 29 H 1.48501 * 109.46985 * 334.96441 * 26 24 22 30 30 C 1.46931 * 120.62826 * 354.91994 * 14 12 2 31 31 H 1.08999 * 109.46685 * 306.34218 * 1 2 3 32 32 H 1.08998 * 109.47126 * 66.33932 * 1 2 3 33 33 H 1.08998 * 109.47233 * 186.33794 * 1 2 3 34 34 H 1.09001 * 109.46671 * 300.00541 * 5 4 2 35 35 H 1.09003 * 109.46796 * 59.99507 * 5 4 2 36 36 H 1.08001 * 120.41865 * 359.97438 * 7 6 5 37 37 H 1.08007 * 119.61652 * 180.24521 * 8 7 6 38 38 H 1.07997 * 119.61795 * 180.02562 * 10 9 8 39 39 H 1.08004 * 120.41531 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.58723 * 113.79459 * 15 14 12 41 41 H 1.09005 * 109.70376 * 353.44208 * 15 14 12 42 42 H 1.08997 * 109.49749 * 185.41383 * 16 15 14 43 43 H 1.08996 * 109.49612 * 65.31438 * 16 15 14 44 44 H 1.08999 * 109.45823 * 301.34036 * 17 16 15 45 45 H 1.09001 * 109.45881 * 181.38617 * 17 16 15 46 46 H 1.08997 * 109.46990 * 94.53233 * 21 20 18 47 47 H 1.08996 * 109.46680 * 214.52807 * 21 20 18 48 48 H 1.08991 * 109.46871 * 334.52728 * 21 20 18 49 49 H 0.96999 * 120.00154 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.58324 * 6.62725 * 30 14 12 51 51 H 1.08990 * 109.58627 * 246.20411 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 1.1666 5 6 2.2001 0.1827 2.2941 6 6 2.7014 -0.6285 3.4609 7 6 1.8149 -1.2046 4.3579 8 6 2.3113 -1.9461 5.4132 9 7 3.6107 -2.0995 5.5776 10 6 4.4829 -1.5615 4.7477 11 6 4.0603 -0.8117 3.6664 12 6 2.0323 -0.7103 -1.2306 13 8 2.4731 -1.8368 -1.1430 14 7 1.9916 -0.0939 -2.4284 15 6 2.5775 -0.7282 -3.6171 16 6 3.5630 0.2506 -4.2631 17 6 2.8498 1.5751 -4.5445 18 6 2.3592 2.1820 -3.2281 19 1 3.2069 2.3377 -2.5609 20 7 1.7043 3.4650 -3.4952 21 6 0.5298 3.5199 -4.3693 22 6 2.1899 4.6128 -2.9279 23 1 3.2123 4.6537 -2.5824 24 6 1.3680 5.7238 -2.7968 25 7 0.0720 5.6108 -2.9965 26 14 2.1014 7.3791 -2.3372 27 1 2.3678 8.1621 -3.5705 28 1 1.1463 8.1217 -1.4759 29 1 3.3731 7.1694 -1.5995 30 6 1.3599 1.2251 -2.5704 31 1 -0.3633 0.6090 0.8278 32 1 -0.3633 0.4124 -0.9413 33 1 -0.3633 -1.0214 0.1134 34 1 2.9320 0.9511 2.0450 35 1 1.2538 0.6545 2.5588 36 1 0.7497 -1.0785 4.2313 37 1 1.6272 -2.4016 6.1140 38 1 5.5397 -1.7092 4.9145 39 1 4.7796 -0.3740 2.9899 40 1 1.7877 -0.9735 -4.3271 41 1 3.1033 -1.6379 -3.3268 42 1 3.9326 -0.1695 -5.1985 43 1 4.3995 0.4245 -3.5862 44 1 1.9987 1.3967 -5.2017 45 1 3.5423 2.2651 -5.0267 46 1 -0.3757 3.4714 -3.7646 47 1 0.5403 4.4524 -4.9336 48 1 0.5512 2.6770 -5.0599 49 1 -0.5023 6.3872 -2.9052 50 1 1.0828 1.6052 -1.5871 51 1 0.4709 1.1391 -3.1950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731713734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:55 Heat of formation + Delta-G solvation = -31.691893 kcal Electronic energy + Delta-G solvation = -31285.936598 eV Core-core repulsion = 27185.715555 eV Total energy + Delta-G solvation = -4100.221044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57075 -41.08953 -39.37377 -38.48639 -36.61303 -34.68262 -33.97252 -33.27594 -32.17141 -31.78095 -30.28148 -28.00255 -27.94294 -26.85625 -25.24468 -24.73107 -24.42799 -23.04855 -22.75413 -21.16727 -20.06884 -18.83254 -18.64921 -17.88423 -17.60397 -17.44154 -17.04500 -16.65953 -16.51333 -16.37777 -15.76620 -15.67788 -15.43974 -15.13113 -15.04331 -14.80490 -14.56566 -14.37665 -14.29511 -14.04188 -13.89661 -13.69190 -13.43667 -13.29538 -13.01820 -12.88490 -12.79824 -12.55849 -12.48097 -12.34504 -12.17662 -12.11084 -12.06279 -11.77858 -11.57365 -11.42503 -11.07377 -10.78939 -10.62707 -10.50780 -10.49732 -10.11038 -9.73335 -8.74305 -7.79528 -5.26577 0.10280 0.17664 1.44186 1.48392 1.51237 1.58002 1.73079 2.50005 2.60276 2.99584 3.30550 3.35068 3.56140 3.67063 3.72185 3.74001 3.83439 3.93568 3.99521 4.04948 4.08832 4.14025 4.17318 4.25640 4.35684 4.38186 4.38657 4.57220 4.61238 4.65548 4.66699 4.70749 4.80809 4.86514 4.86824 4.95982 4.99584 5.02606 5.09442 5.12011 5.32501 5.33044 5.41152 5.46982 5.55884 5.67454 5.72684 5.79480 5.92208 6.28087 6.37509 6.97239 7.05948 7.18836 7.89934 8.32193 9.22450 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.002909 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.744657 B = 9623.122980 C =11296.083121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 H 0.096 0.904 4 O -0.373 6.373 5 C 0.093 3.907 6 C -0.058 4.058 7 C -0.155 4.155 8 C 0.087 3.913 9 N -0.507 5.507 10 C 0.087 3.913 11 C -0.161 4.161 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.600 5.600 15 C 0.110 3.890 16 C -0.118 4.118 17 C -0.125 4.125 18 C 0.164 3.836 19 H 0.054 0.946 20 N -0.605 5.605 21 C 0.177 3.823 22 C -0.259 4.259 23 H 0.068 0.932 24 C -0.045 4.045 25 N -0.932 5.932 26 Si 0.960 3.040 27 H -0.292 1.292 28 H -0.296 1.296 29 H -0.270 1.270 30 C 0.101 3.899 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.008 0.992 47 H 0.015 0.985 48 H 0.031 0.969 49 H 0.247 0.753 50 H 0.082 0.918 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -12.036 7.827 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 H 0.113 0.887 4 O -0.291 6.291 5 C 0.017 3.983 6 C -0.066 4.066 7 C -0.174 4.174 8 C -0.069 4.069 9 N -0.217 5.217 10 C -0.069 4.069 11 C -0.181 4.181 12 C 0.304 3.696 13 O -0.448 6.448 14 N -0.334 5.334 15 C -0.011 4.011 16 C -0.157 4.157 17 C -0.164 4.164 18 C 0.056 3.944 19 H 0.072 0.928 20 N -0.328 5.328 21 C 0.032 3.968 22 C -0.389 4.389 23 H 0.086 0.914 24 C -0.240 4.240 25 N -0.579 5.579 26 Si 0.789 3.211 27 H -0.219 1.219 28 H -0.223 1.223 29 H -0.195 1.195 30 C -0.023 4.023 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.174 0.826 37 H 0.199 0.801 38 H 0.195 0.805 39 H 0.163 0.837 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.027 0.973 47 H 0.034 0.966 48 H 0.049 0.951 49 H 0.057 0.943 50 H 0.100 0.900 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.267 -13.174 8.585 16.060 hybrid contribution -0.253 2.055 -0.636 2.166 sum 3.014 -11.119 7.949 13.996 Atomic orbital electron populations 1.22238 0.91826 1.03784 1.04485 1.21951 0.96485 0.96131 0.84222 0.88672 1.88043 1.86892 1.34930 1.19270 1.21599 1.01586 0.91448 0.83665 1.20186 0.94234 0.97098 0.95088 1.22357 1.02016 0.97674 0.95380 1.23230 0.91969 0.95227 0.96515 1.67702 1.04258 1.20518 1.29253 1.23146 1.00723 0.92846 0.90226 1.22335 0.96191 1.00039 0.99506 1.20690 0.77933 0.85999 0.84935 1.90648 1.48067 1.19875 1.86239 1.48212 1.57306 1.19739 1.08106 1.21728 0.97136 0.96335 0.85927 1.21828 0.97511 0.94697 1.01643 1.21953 1.00193 0.96260 0.98024 1.20774 0.93747 0.84583 0.95259 0.92750 1.44088 1.33111 1.02166 1.53411 1.20540 0.88397 0.96478 0.91357 1.19497 0.94642 0.90623 1.34153 0.91388 1.25612 0.95447 1.01656 1.01332 1.70202 1.03149 1.29166 1.55390 0.85362 0.77638 0.80756 0.77337 1.21917 1.22271 1.19472 1.22498 0.96628 0.80810 1.02363 0.89263 0.90570 0.91379 0.91062 0.89722 0.82627 0.80086 0.80467 0.83653 0.90079 0.89860 0.88287 0.92359 0.91714 0.92486 0.97341 0.96626 0.95090 0.94326 0.89958 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 9.13 71.98 0.66 -3.16 16 2 C 0.07 1.98 2.28 29.85 0.07 2.04 16 3 H 0.10 2.47 6.68 -2.39 -0.02 2.45 16 4 O -0.37 -10.51 9.55 -130.45 -1.25 -11.76 16 5 C 0.09 1.99 5.92 71.23 0.42 2.41 16 6 C -0.06 -1.24 5.55 -19.67 -0.11 -1.35 16 7 C -0.15 -2.90 9.82 22.36 0.22 -2.68 16 8 C 0.09 1.63 11.18 84.68 0.95 2.58 16 9 N -0.51 -11.30 10.36 -195.84 -2.03 -13.33 16 10 C 0.09 1.74 11.18 84.68 0.95 2.68 16 11 C -0.16 -3.33 9.82 22.36 0.22 -3.11 16 12 C 0.52 16.46 7.00 87.66 0.61 17.07 16 13 O -0.57 -21.96 16.02 15.48 0.25 -21.72 16 14 N -0.60 -17.36 2.97 -818.91 -2.43 -19.79 16 15 C 0.11 2.78 6.41 86.36 0.55 3.33 16 16 C -0.12 -2.78 6.08 30.67 0.19 -2.60 16 17 C -0.12 -3.64 5.13 30.62 0.16 -3.48 16 18 C 0.16 5.76 2.74 45.07 0.12 5.89 16 19 H 0.05 2.02 7.86 -2.39 -0.02 2.01 16 20 N -0.61 -26.83 2.82 -702.36 -1.98 -28.81 16 21 C 0.18 7.83 7.90 127.77 1.01 8.84 16 22 C -0.26 -12.99 9.62 84.03 0.81 -12.18 16 23 H 0.07 3.36 7.80 -2.91 -0.02 3.34 16 24 C -0.04 -2.33 5.12 84.86 0.43 -1.89 16 25 N -0.93 -51.02 10.55 21.65 0.23 -50.79 16 26 Si 0.96 42.47 29.57 68.60 2.03 44.50 16 27 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 28 H -0.30 -13.25 7.11 99.48 0.71 -12.55 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 30 C 0.10 3.13 4.69 86.36 0.40 3.53 16 31 H 0.09 1.70 8.03 -2.39 -0.02 1.68 16 32 H 0.08 1.80 6.38 -2.39 -0.02 1.79 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.43 8.05 -2.39 -0.02 1.41 16 35 H 0.08 1.47 7.99 -2.39 -0.02 1.45 16 36 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 2.22 7.05 -2.38 -0.02 2.20 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.06 1.84 6.72 -2.39 -0.02 1.82 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.01 0.40 7.42 -2.39 -0.02 0.38 16 47 H 0.01 0.76 7.16 -2.39 -0.02 0.74 16 48 H 0.03 1.15 6.46 -2.39 -0.02 1.13 16 49 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 50 H 0.08 2.59 4.86 -2.39 -0.01 2.58 16 51 H 0.07 2.19 7.51 -2.39 -0.02 2.17 16 Total: -1.00 -67.16 403.93 3.39 -63.77 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.92 Total: 20.00 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 7.66 Total: 17.93 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -6.21 Total: -112.71 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.00 Total: -33.47 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -67.16 3.39 -63.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731713734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.075 kcal (2) G-P(sol) polarization free energy of solvation -67.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds