Wall clock time and date at job start Wed Apr 1 2020 04:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47348 * 2 1 4 4 O 1.42898 * 109.47074 * 239.99501 * 2 1 3 5 5 C 1.42900 * 114.00139 * 90.00326 * 4 2 1 6 6 C 1.50696 * 109.47443 * 179.97438 * 5 4 2 7 7 C 1.38645 * 120.78940 * 90.00060 * 6 5 4 8 8 C 1.38206 * 119.16313 * 180.02562 * 7 6 5 9 9 N 1.31867 * 120.76460 * 0.02562 * 8 7 6 10 10 C 1.31868 * 121.72291 * 359.97438 * 9 8 7 11 11 C 1.38202 * 120.76924 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.46606 * 119.99695 * 2 1 3 13 13 O 1.21286 * 119.99641 * 108.54041 * 12 2 1 14 14 N 1.34777 * 119.99989 * 288.53327 * 12 2 1 15 15 C 1.46921 * 120.62896 * 4.67360 * 14 12 2 16 16 C 1.52768 * 109.00339 * 233.57877 * 15 14 12 17 17 C 1.53031 * 109.38495 * 305.58914 * 16 15 14 18 18 C 1.53039 * 109.54063 * 61.24391 * 17 16 15 19 19 H 1.09004 * 109.49793 * 58.57919 * 18 17 16 20 20 N 1.46496 * 109.50311 * 178.68334 * 18 17 16 21 21 C 1.46503 * 120.00262 * 59.83186 * 20 18 17 22 22 C 1.36937 * 119.99971 * 239.83981 * 20 18 17 23 23 H 1.07995 * 120.00195 * 22.00061 * 22 20 18 24 24 C 1.38812 * 120.00041 * 202.00292 * 22 20 18 25 25 N 1.31622 * 120.00115 * 11.57752 * 24 22 20 26 26 Si 1.86806 * 120.00043 * 191.57777 * 24 22 20 27 27 H 1.48500 * 109.47091 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.46903 * 120.00265 * 26 24 22 29 29 H 1.48501 * 109.46664 * 239.99929 * 26 24 22 30 30 C 1.46928 * 120.62655 * 184.95243 * 14 12 2 31 31 H 1.08995 * 109.47288 * 304.46348 * 1 2 3 32 32 H 1.09003 * 109.47112 * 64.46100 * 1 2 3 33 33 H 1.08997 * 109.47617 * 184.45778 * 1 2 3 34 34 H 1.09003 * 109.47071 * 59.99469 * 5 4 2 35 35 H 1.09002 * 109.47029 * 300.00287 * 5 4 2 36 36 H 1.08007 * 120.42422 * 0.02562 * 7 6 5 37 37 H 1.07997 * 119.61916 * 180.02562 * 8 7 6 38 38 H 1.08003 * 119.61880 * 179.97438 * 10 9 8 39 39 H 1.08003 * 120.42304 * 179.97438 * 11 10 9 40 40 H 1.08990 * 109.59077 * 353.41498 * 15 14 12 41 41 H 1.08998 * 109.58222 * 113.84702 * 15 14 12 42 42 H 1.08998 * 109.56004 * 185.55319 * 16 15 14 43 43 H 1.09003 * 109.35549 * 65.50194 * 16 15 14 44 44 H 1.09000 * 109.46570 * 301.21961 * 17 16 15 45 45 H 1.09005 * 109.46182 * 181.25706 * 17 16 15 46 46 H 1.08997 * 109.46723 * 94.53714 * 21 20 18 47 47 H 1.08999 * 109.47139 * 214.53982 * 21 20 18 48 48 H 1.08999 * 109.47076 * 334.54217 * 21 20 18 49 49 H 0.97001 * 120.00049 * 179.97438 * 25 24 22 50 50 H 1.09004 * 109.58663 * 246.15630 * 30 14 12 51 51 H 1.08994 * 109.59057 * 6.57733 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2002 0.1827 -2.2941 6 6 2.7015 -0.6285 -3.4609 7 6 1.8148 -1.2094 -4.3546 8 6 2.3114 -1.9469 -5.4127 9 7 3.6107 -2.1010 -5.5765 10 6 4.4829 -1.5631 -4.7465 11 6 4.0604 -0.8116 -3.6663 12 6 2.0322 -0.7104 1.2305 13 8 2.5492 -1.8030 1.1314 14 7 1.9070 -0.1314 2.4412 15 6 1.1929 1.1439 2.5907 16 6 2.0994 2.1400 3.3118 17 6 2.5780 1.5287 4.6306 18 6 3.3839 0.2597 4.3439 19 1 4.2323 0.5041 3.7046 20 7 3.8682 -0.3074 5.6048 21 6 2.9140 -0.7170 6.6382 22 6 5.2129 -0.4545 5.8176 23 1 5.9169 0.1424 5.2569 24 6 5.6713 -1.3710 6.7540 25 7 4.8432 -2.2542 7.2705 26 14 7.4634 -1.3511 7.2810 27 1 8.1800 -0.2701 6.5576 28 1 7.5465 -1.1083 8.7436 29 1 8.0882 -2.6595 6.9601 30 6 2.4873 -0.7606 3.6354 31 1 -0.3633 0.5815 0.8472 32 1 -0.3633 0.4431 -0.9273 33 1 -0.3634 -1.0245 0.0799 34 1 2.9320 0.9512 -2.0450 35 1 1.2539 0.6545 -2.5589 36 1 0.7495 -1.0871 -4.2256 37 1 1.6274 -2.4023 -6.1135 38 1 5.5397 -1.7115 -4.9127 39 1 4.7796 -0.3740 -2.9898 40 1 0.9326 1.5345 1.6071 41 1 0.2867 0.9886 3.1762 42 1 1.5454 3.0563 3.5154 43 1 2.9599 2.3667 2.6823 44 1 1.7161 1.2794 5.2494 45 1 3.2069 2.2470 5.1567 46 1 2.7006 -1.7809 6.5345 47 1 3.3407 -0.5263 7.6229 48 1 1.9907 -0.1487 6.5260 49 1 5.1636 -2.8948 7.9246 50 1 1.6887 -1.0742 4.3077 51 1 3.0806 -1.6261 3.3407 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731713735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:00 Heat of formation + Delta-G solvation = -10.690557 kcal Electronic energy + Delta-G solvation = -30903.174862 eV Core-core repulsion = 26803.864504 eV Total energy + Delta-G solvation = -4099.310357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.54558 -40.18288 -38.28375 -37.11255 -35.18116 -33.74928 -32.56955 -31.49505 -31.47603 -31.08577 -28.66160 -27.21307 -26.02965 -25.71548 -23.89657 -23.73928 -23.17887 -22.28725 -21.66164 -19.76524 -18.73805 -17.77016 -17.01931 -16.82124 -16.75484 -16.54442 -15.89371 -15.65239 -15.35382 -14.98733 -14.62666 -14.26677 -14.18431 -14.04086 -13.94342 -13.70830 -13.62318 -13.27981 -13.08356 -12.82625 -12.66431 -12.41815 -12.28156 -12.19772 -11.89628 -11.83117 -11.51821 -11.15615 -11.04429 -10.82874 -10.64629 -10.42270 -10.36152 -10.18548 -10.17372 -10.03011 -9.85962 -9.77074 -9.76306 -9.42030 -9.33328 -8.60402 -8.34341 -6.77869 -5.72925 -3.19100 0.83726 0.86904 2.72702 2.83519 3.38199 3.44231 3.46075 3.47651 3.79581 4.19416 4.29630 4.36889 4.47233 4.49241 4.61628 4.73116 4.77707 4.83720 4.87448 4.97155 5.02965 5.06222 5.18258 5.30332 5.33259 5.39147 5.42362 5.48328 5.49997 5.52100 5.65624 5.69468 5.83998 5.87446 5.96125 6.00715 6.07296 6.19129 6.33796 6.40052 6.45840 6.60418 6.74324 6.78328 6.91599 6.96904 7.38463 7.61944 7.68449 7.72058 7.81242 8.35959 8.40766 9.22712 9.85021 10.32990 11.31799 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.002410 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.978119 B =11613.113129 C =13058.325797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 H 0.085 0.915 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.043 4.043 7 C -0.152 4.152 8 C 0.094 3.906 9 N -0.483 5.483 10 C 0.097 3.903 11 C -0.148 4.148 12 C 0.511 3.489 13 O -0.518 6.518 14 N -0.605 5.605 15 C 0.102 3.898 16 C -0.132 4.132 17 C -0.134 4.134 18 C 0.169 3.831 19 H 0.064 0.936 20 N -0.592 5.592 21 C 0.162 3.838 22 C -0.255 4.255 23 H 0.069 0.931 24 C 0.002 3.998 25 N -0.906 5.906 26 Si 0.906 3.094 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.290 1.290 30 C 0.100 3.900 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.029 0.971 47 H 0.045 0.955 48 H -0.001 1.001 49 H 0.252 0.748 50 H 0.062 0.938 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 10.696 -19.992 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.010 3.990 3 H 0.103 0.897 4 O -0.266 6.266 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.172 4.172 8 C -0.063 4.063 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.168 4.168 12 C 0.297 3.703 13 O -0.393 6.393 14 N -0.340 5.340 15 C -0.021 4.021 16 C -0.171 4.171 17 C -0.173 4.173 18 C 0.059 3.941 19 H 0.082 0.918 20 N -0.314 5.314 21 C 0.018 3.982 22 C -0.384 4.384 23 H 0.087 0.913 24 C -0.196 4.196 25 N -0.551 5.551 26 Si 0.736 3.264 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.217 1.217 30 C -0.023 4.023 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.156 0.844 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.047 0.953 47 H 0.064 0.936 48 H 0.017 0.983 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.742 9.253 -20.588 24.997 hybrid contribution 0.510 0.683 1.198 1.470 sum -10.232 9.936 -19.389 24.070 Atomic orbital electron populations 1.22354 0.93573 1.04168 1.03155 1.21954 0.95149 0.96214 0.85660 0.89735 1.88145 1.86582 1.33433 1.18426 1.21415 1.00030 0.91722 0.84731 1.19963 0.93712 0.96790 0.94702 1.22069 1.00944 0.98316 0.95831 1.22767 0.91998 0.95404 0.96102 1.67669 1.03391 1.19516 1.28659 1.22798 0.99776 0.92972 0.90458 1.22143 0.95921 0.99757 0.98991 1.20218 0.79787 0.86340 0.83964 1.90743 1.43011 1.19906 1.85591 1.48238 1.55320 1.22999 1.07481 1.21810 0.95331 0.84110 1.00817 1.21853 0.99500 0.97666 0.98110 1.22088 1.00583 0.99014 0.95623 1.20630 0.94373 0.90699 0.88384 0.91782 1.43958 1.03351 1.72992 1.11065 1.20802 0.88683 0.96766 0.91987 1.19262 0.82274 1.16264 1.20634 0.91316 1.25043 0.97741 0.95921 1.00910 1.70079 1.33765 1.19254 1.32038 0.86159 0.84706 0.77413 0.78118 1.20341 1.21627 1.21668 1.22578 0.97354 0.98396 0.84001 0.90327 0.91321 0.90950 0.91710 0.91758 0.84638 0.82596 0.82453 0.84434 0.90297 0.91222 0.91132 0.91781 0.92169 0.91634 0.95298 0.93632 0.98301 0.93742 0.91982 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.15 37.16 0.34 -1.16 16 2 C 0.07 0.82 2.29 -27.88 -0.06 0.75 16 3 H 0.08 0.74 6.94 -51.93 -0.36 0.38 16 4 O -0.35 -4.54 9.53 -54.88 -0.52 -5.06 16 5 C 0.10 0.87 5.92 36.00 0.21 1.09 16 6 C -0.04 -0.43 5.55 -104.32 -0.58 -1.01 16 7 C -0.15 -1.34 9.82 -39.44 -0.39 -1.73 16 8 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 9 N -0.48 -5.35 10.36 -13.25 -0.14 -5.49 16 10 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 11 C -0.15 -1.46 9.82 -39.44 -0.39 -1.85 16 12 C 0.51 8.34 7.05 -10.99 -0.08 8.26 16 13 O -0.52 -11.19 15.97 -14.09 -0.23 -11.41 16 14 N -0.60 -9.20 2.98 -173.03 -0.52 -9.71 16 15 C 0.10 1.09 5.29 -3.93 -0.02 1.07 16 16 C -0.13 -1.50 6.06 -26.83 -0.16 -1.66 16 17 C -0.13 -2.09 5.13 -26.70 -0.14 -2.23 16 18 C 0.17 3.36 2.74 -67.81 -0.19 3.18 16 19 H 0.06 1.36 7.86 -51.93 -0.41 0.95 16 20 N -0.59 -14.56 2.82 -173.35 -0.49 -15.05 16 21 C 0.16 3.90 7.91 59.85 0.47 4.37 16 22 C -0.25 -6.98 9.61 -15.06 -0.14 -7.13 16 23 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 24 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 25 N -0.91 -26.52 10.58 55.49 0.59 -25.93 16 26 Si 0.91 22.04 29.57 -169.99 -5.03 17.02 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 C 0.10 1.92 5.78 -3.71 -0.02 1.90 16 31 H 0.08 0.55 5.82 -51.93 -0.30 0.25 16 32 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.49 8.05 -51.93 -0.42 0.08 16 35 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 36 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.16 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.08 0.60 4.55 -51.93 -0.24 0.37 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.94 6.71 -51.93 -0.35 0.59 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.03 0.76 7.41 -51.93 -0.38 0.38 16 47 H 0.04 1.19 7.19 -51.93 -0.37 0.81 16 48 H 0.00 -0.03 6.45 -51.93 -0.34 -0.37 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.06 1.20 7.52 -51.93 -0.39 0.81 16 51 H 0.09 2.11 7.04 -51.93 -0.37 1.74 16 LS Contribution 402.85 15.07 6.07 6.07 Total: -1.00 -35.35 402.85 -9.96 -45.31 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.08 Total: -1.02 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.62 Total: 5.28 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.55 Total: -56.18 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.75 Total: -16.48 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.35 -9.96 -45.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731713735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.619 kcal (2) G-P(sol) polarization free energy of solvation -35.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds