Wall clock time and date at job start Wed Apr 1 2020 04:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47348 * 2 1 4 4 O 1.42898 * 109.47074 * 239.99501 * 2 1 3 5 5 C 1.42900 * 114.00139 * 90.00326 * 4 2 1 6 6 C 1.50696 * 109.47443 * 179.97438 * 5 4 2 7 7 C 1.38645 * 120.78940 * 90.00060 * 6 5 4 8 8 C 1.38206 * 119.16313 * 180.02562 * 7 6 5 9 9 N 1.31867 * 120.76460 * 0.02562 * 8 7 6 10 10 C 1.31868 * 121.72291 * 359.97438 * 9 8 7 11 11 C 1.38202 * 120.76924 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.46606 * 119.99695 * 2 1 3 13 13 O 1.21286 * 119.99641 * 108.54041 * 12 2 1 14 14 N 1.34777 * 119.99989 * 288.53327 * 12 2 1 15 15 C 1.46921 * 120.62896 * 4.67360 * 14 12 2 16 16 C 1.52768 * 109.00339 * 233.57877 * 15 14 12 17 17 C 1.53031 * 109.38495 * 305.58914 * 16 15 14 18 18 C 1.53039 * 109.54063 * 61.24391 * 17 16 15 19 19 H 1.09004 * 109.49793 * 58.57919 * 18 17 16 20 20 N 1.46496 * 109.50311 * 178.68334 * 18 17 16 21 21 C 1.46503 * 120.00262 * 59.83186 * 20 18 17 22 22 C 1.36937 * 119.99971 * 239.83981 * 20 18 17 23 23 H 1.07995 * 120.00195 * 22.00061 * 22 20 18 24 24 C 1.38812 * 120.00041 * 202.00292 * 22 20 18 25 25 N 1.31622 * 120.00115 * 11.57752 * 24 22 20 26 26 Si 1.86806 * 120.00043 * 191.57777 * 24 22 20 27 27 H 1.48500 * 109.47091 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.46903 * 120.00265 * 26 24 22 29 29 H 1.48501 * 109.46664 * 239.99929 * 26 24 22 30 30 C 1.46928 * 120.62655 * 184.95243 * 14 12 2 31 31 H 1.08995 * 109.47288 * 304.46348 * 1 2 3 32 32 H 1.09003 * 109.47112 * 64.46100 * 1 2 3 33 33 H 1.08997 * 109.47617 * 184.45778 * 1 2 3 34 34 H 1.09003 * 109.47071 * 59.99469 * 5 4 2 35 35 H 1.09002 * 109.47029 * 300.00287 * 5 4 2 36 36 H 1.08007 * 120.42422 * 0.02562 * 7 6 5 37 37 H 1.07997 * 119.61916 * 180.02562 * 8 7 6 38 38 H 1.08003 * 119.61880 * 179.97438 * 10 9 8 39 39 H 1.08003 * 120.42304 * 179.97438 * 11 10 9 40 40 H 1.08990 * 109.59077 * 353.41498 * 15 14 12 41 41 H 1.08998 * 109.58222 * 113.84702 * 15 14 12 42 42 H 1.08998 * 109.56004 * 185.55319 * 16 15 14 43 43 H 1.09003 * 109.35549 * 65.50194 * 16 15 14 44 44 H 1.09000 * 109.46570 * 301.21961 * 17 16 15 45 45 H 1.09005 * 109.46182 * 181.25706 * 17 16 15 46 46 H 1.08997 * 109.46723 * 94.53714 * 21 20 18 47 47 H 1.08999 * 109.47139 * 214.53982 * 21 20 18 48 48 H 1.08999 * 109.47076 * 334.54217 * 21 20 18 49 49 H 0.97001 * 120.00049 * 179.97438 * 25 24 22 50 50 H 1.09004 * 109.58663 * 246.15630 * 30 14 12 51 51 H 1.08994 * 109.59057 * 6.57733 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2002 0.1827 -2.2941 6 6 2.7015 -0.6285 -3.4609 7 6 1.8148 -1.2094 -4.3546 8 6 2.3114 -1.9469 -5.4127 9 7 3.6107 -2.1010 -5.5765 10 6 4.4829 -1.5631 -4.7465 11 6 4.0604 -0.8116 -3.6663 12 6 2.0322 -0.7104 1.2305 13 8 2.5492 -1.8030 1.1314 14 7 1.9070 -0.1314 2.4412 15 6 1.1929 1.1439 2.5907 16 6 2.0994 2.1400 3.3118 17 6 2.5780 1.5287 4.6306 18 6 3.3839 0.2597 4.3439 19 1 4.2323 0.5041 3.7046 20 7 3.8682 -0.3074 5.6048 21 6 2.9140 -0.7170 6.6382 22 6 5.2129 -0.4545 5.8176 23 1 5.9169 0.1424 5.2569 24 6 5.6713 -1.3710 6.7540 25 7 4.8432 -2.2542 7.2705 26 14 7.4634 -1.3511 7.2810 27 1 8.1800 -0.2701 6.5576 28 1 7.5465 -1.1083 8.7436 29 1 8.0882 -2.6595 6.9601 30 6 2.4873 -0.7606 3.6354 31 1 -0.3633 0.5815 0.8472 32 1 -0.3633 0.4431 -0.9273 33 1 -0.3634 -1.0245 0.0799 34 1 2.9320 0.9512 -2.0450 35 1 1.2539 0.6545 -2.5589 36 1 0.7495 -1.0871 -4.2256 37 1 1.6274 -2.4023 -6.1135 38 1 5.5397 -1.7115 -4.9127 39 1 4.7796 -0.3740 -2.9898 40 1 0.9326 1.5345 1.6071 41 1 0.2867 0.9886 3.1762 42 1 1.5454 3.0563 3.5154 43 1 2.9599 2.3667 2.6823 44 1 1.7161 1.2794 5.2494 45 1 3.2069 2.2470 5.1567 46 1 2.7006 -1.7809 6.5345 47 1 3.3407 -0.5263 7.6229 48 1 1.9907 -0.1487 6.5260 49 1 5.1636 -2.8948 7.9246 50 1 1.6887 -1.0742 4.3077 51 1 3.0806 -1.6261 3.3407 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731713735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:59 Heat of formation + Delta-G solvation = -33.494092 kcal Electronic energy + Delta-G solvation = -30904.163697 eV Core-core repulsion = 26803.864504 eV Total energy + Delta-G solvation = -4100.299193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.54014 -41.07581 -39.37916 -38.39890 -36.83805 -34.59832 -33.99624 -32.83727 -32.27256 -32.16039 -30.20236 -28.07821 -27.90056 -26.86369 -25.38205 -24.46022 -24.33475 -23.02464 -22.96800 -21.13444 -20.04589 -18.86369 -18.63637 -17.90445 -17.58693 -17.43982 -17.07556 -16.65205 -16.49872 -16.32521 -15.84939 -15.64609 -15.29572 -15.13342 -15.10706 -14.78029 -14.56577 -14.42016 -14.25946 -14.07573 -13.89047 -13.70775 -13.40916 -13.27369 -12.98096 -12.90696 -12.83667 -12.53348 -12.45740 -12.30485 -12.20105 -12.08496 -12.07590 -11.73368 -11.61475 -11.38917 -11.01585 -10.75986 -10.67999 -10.49441 -10.47638 -10.10442 -9.71287 -8.79347 -7.86078 -5.34396 0.12375 0.18288 1.42102 1.43810 1.52829 1.54443 1.75235 2.47263 2.63850 3.05199 3.27617 3.40011 3.57018 3.60650 3.71765 3.76340 3.88814 3.97503 4.05424 4.09178 4.10886 4.13318 4.19208 4.24328 4.37381 4.39096 4.43180 4.57792 4.68478 4.68987 4.71318 4.77607 4.82340 4.86865 4.88292 4.94284 4.97577 5.05508 5.17518 5.23225 5.27088 5.33408 5.42628 5.47149 5.57229 5.60536 5.71334 5.74134 6.01549 6.29861 6.45617 6.98432 7.11692 7.15860 7.84132 8.25890 9.16755 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.002410 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.978119 B =11613.113129 C =13058.325797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 H 0.123 0.877 4 O -0.385 6.385 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.152 4.152 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.082 3.918 11 C -0.163 4.163 12 C 0.500 3.500 13 O -0.588 6.588 14 N -0.601 5.601 15 C 0.095 3.905 16 C -0.124 4.124 17 C -0.124 4.124 18 C 0.167 3.833 19 H 0.044 0.956 20 N -0.610 5.610 21 C 0.181 3.819 22 C -0.262 4.262 23 H 0.068 0.932 24 C -0.055 4.055 25 N -0.939 5.939 26 Si 0.969 3.031 27 H -0.266 1.266 28 H -0.286 1.286 29 H -0.296 1.296 30 C 0.115 3.885 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.057 0.943 46 H -0.004 1.004 47 H 0.018 0.982 48 H 0.037 0.963 49 H 0.248 0.752 50 H 0.058 0.942 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.635 14.307 -21.593 29.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.019 3.981 3 H 0.140 0.860 4 O -0.304 6.304 5 C 0.020 3.980 6 C -0.069 4.069 7 C -0.171 4.171 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.074 4.074 11 C -0.183 4.183 12 C 0.288 3.712 13 O -0.467 6.467 14 N -0.335 5.335 15 C -0.026 4.026 16 C -0.162 4.162 17 C -0.163 4.163 18 C 0.059 3.941 19 H 0.063 0.937 20 N -0.333 5.333 21 C 0.036 3.964 22 C -0.393 4.393 23 H 0.086 0.914 24 C -0.250 4.250 25 N -0.586 5.586 26 Si 0.798 3.202 27 H -0.190 1.190 28 H -0.213 1.213 29 H -0.223 1.223 30 C -0.010 4.010 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.189 0.811 39 H 0.162 0.838 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.014 0.986 47 H 0.037 0.963 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.076 0.924 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.992 12.946 -22.221 28.813 hybrid contribution 1.173 -0.438 1.614 2.042 sum -11.820 12.508 -20.607 26.848 Atomic orbital electron populations 1.22381 0.90866 1.03511 1.05902 1.22031 0.96855 0.96496 0.82685 0.85965 1.88105 1.87074 1.35584 1.19682 1.21646 1.02145 0.91199 0.83052 1.20293 0.93849 0.97255 0.95463 1.22382 1.02195 0.97403 0.95127 1.23261 0.91841 0.95408 0.96835 1.67685 1.04467 1.20421 1.29503 1.23102 1.00591 0.93133 0.90619 1.22343 0.96639 1.00086 0.99194 1.21383 0.78429 0.85782 0.85570 1.90710 1.46145 1.23199 1.86658 1.48274 1.54906 1.24386 1.05952 1.22270 0.95145 0.81424 1.03742 1.21850 1.00175 0.98969 0.95217 1.21931 0.99659 0.96169 0.98516 1.20806 0.94499 0.92514 0.86286 0.93743 1.44198 1.02724 1.73314 1.13030 1.20489 0.89837 0.95388 0.90691 1.19572 0.83877 1.15683 1.20131 0.91430 1.25825 1.01699 0.95972 1.01537 1.70251 1.35407 1.20106 1.32788 0.85164 0.80171 0.77183 0.77711 1.19006 1.21288 1.22320 1.21975 0.96590 0.96719 0.85695 0.88118 0.87992 0.93339 0.90417 0.88343 0.82029 0.80216 0.81054 0.83843 0.85885 0.89292 0.86859 0.91666 0.91748 0.92433 0.98582 0.96301 0.94459 0.94285 0.92354 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.15 71.98 0.66 -1.47 16 2 C 0.08 1.57 2.29 29.85 0.07 1.63 16 3 H 0.12 1.45 6.94 -2.39 -0.02 1.43 16 4 O -0.39 -9.30 9.53 -130.20 -1.24 -10.55 16 5 C 0.10 1.41 5.92 71.23 0.42 1.83 16 6 C -0.06 -1.10 5.55 -19.67 -0.11 -1.21 16 7 C -0.15 -2.38 9.82 22.36 0.22 -2.16 16 8 C 0.08 1.44 11.18 84.68 0.95 2.39 16 9 N -0.51 -11.22 10.36 -195.85 -2.03 -13.25 16 10 C 0.08 1.63 11.18 84.68 0.95 2.58 16 11 C -0.16 -3.17 9.82 22.36 0.22 -2.95 16 12 C 0.50 16.05 7.05 87.66 0.62 16.67 16 13 O -0.59 -26.75 15.97 15.74 0.25 -26.50 16 14 N -0.60 -17.51 2.98 -819.74 -2.44 -19.95 16 15 C 0.09 1.57 5.29 86.22 0.46 2.02 16 16 C -0.12 -2.21 6.06 30.53 0.19 -2.02 16 17 C -0.12 -3.58 5.13 30.62 0.16 -3.42 16 18 C 0.17 6.73 2.74 45.07 0.12 6.85 16 19 H 0.04 1.93 7.86 -2.38 -0.02 1.91 16 20 N -0.61 -30.93 2.82 -702.35 -1.98 -32.91 16 21 C 0.18 8.96 7.91 127.77 1.01 9.97 16 22 C -0.26 -14.84 9.61 84.03 0.81 -14.03 16 23 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 24 C -0.06 -3.21 5.13 84.86 0.44 -2.77 16 25 N -0.94 -57.31 10.58 21.65 0.23 -57.09 16 26 Si 0.97 46.56 29.57 68.60 2.03 48.59 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 30 C 0.12 4.58 5.78 86.36 0.50 5.08 16 31 H 0.10 0.80 5.82 -2.39 -0.01 0.79 16 32 H 0.10 0.66 7.79 -2.39 -0.02 0.64 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.92 8.05 -2.39 -0.02 0.90 16 35 H 0.10 0.76 7.75 -2.39 -0.02 0.74 16 36 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.12 1.03 4.55 -2.39 -0.01 1.02 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 1.82 6.71 -2.39 -0.02 1.80 16 45 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.00 -0.23 7.41 -2.39 -0.02 -0.25 16 47 H 0.02 1.00 7.19 -2.39 -0.02 0.98 16 48 H 0.04 1.52 6.45 -2.39 -0.02 1.51 16 49 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 50 H 0.06 2.32 7.52 -2.39 -0.02 2.30 16 51 H 0.04 1.88 7.04 -2.39 -0.02 1.86 16 Total: -1.00 -85.89 402.85 3.40 -82.48 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.92 Total: 10.16 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 7.66 Total: 19.00 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -6.22 Total: -123.19 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.99 Total: -37.04 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -85.89 3.40 -82.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731713735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.989 kcal (2) G-P(sol) polarization free energy of solvation -85.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds