Wall clock time and date at job start Wed Apr 1 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47405 * 2 1 4 4 O 1.42902 * 109.46877 * 240.00168 * 2 1 3 5 5 C 1.42898 * 114.00239 * 90.00006 * 4 2 1 6 6 C 1.50703 * 109.47352 * 179.97438 * 5 4 2 7 7 C 1.38646 * 120.78935 * 269.72278 * 6 5 4 8 8 C 1.38207 * 119.16118 * 179.75763 * 7 6 5 9 9 N 1.31868 * 120.76488 * 0.52842 * 8 7 6 10 10 C 1.31873 * 121.72239 * 359.74331 * 9 8 7 11 11 C 1.38197 * 120.76485 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.46938 * 120.00443 * 2 1 3 13 13 O 1.21285 * 119.99967 * 111.83365 * 12 2 1 14 14 N 1.34775 * 119.99915 * 291.82862 * 12 2 1 15 15 C 1.46920 * 120.62913 * 355.78875 * 14 12 2 16 16 C 1.53192 * 108.77639 * 126.36842 * 15 14 12 17 17 C 1.53042 * 109.31147 * 54.63496 * 16 15 14 18 18 C 1.53076 * 109.65669 * 298.69922 * 17 16 15 19 19 H 1.09000 * 109.39125 * 301.28107 * 18 17 16 20 20 N 1.46503 * 109.62239 * 181.16895 * 18 17 16 21 21 C 1.46498 * 120.00347 * 300.10973 * 20 18 17 22 22 C 1.36943 * 119.99846 * 120.10716 * 20 18 17 23 23 H 1.08002 * 120.00211 * 325.04525 * 22 20 18 24 24 C 1.38810 * 119.99997 * 145.04127 * 22 20 18 25 25 N 1.31615 * 119.99988 * 158.72141 * 24 22 20 26 26 Si 1.86800 * 119.99990 * 338.72956 * 24 22 20 27 27 H 1.48504 * 109.47209 * 90.97785 * 26 24 22 28 28 H 1.48502 * 109.47015 * 210.97547 * 26 24 22 29 29 H 1.48497 * 109.47251 * 330.97734 * 26 24 22 30 30 C 1.46929 * 120.63003 * 175.76464 * 14 12 2 31 31 H 1.08997 * 109.46940 * 304.75085 * 1 2 3 32 32 H 1.09002 * 109.47050 * 64.74522 * 1 2 3 33 33 H 1.09001 * 109.47292 * 184.74664 * 1 2 3 34 34 H 1.09000 * 109.47280 * 300.00144 * 5 4 2 35 35 H 1.09000 * 109.47124 * 60.00109 * 5 4 2 36 36 H 1.08006 * 120.42234 * 0.02562 * 7 6 5 37 37 H 1.08006 * 119.61749 * 180.29460 * 8 7 6 38 38 H 1.07999 * 119.61550 * 180.02562 * 10 9 8 39 39 H 1.08007 * 120.41960 * 179.97438 * 11 10 9 40 40 H 1.09003 * 109.58683 * 246.15559 * 15 14 12 41 41 H 1.09003 * 109.58924 * 6.58203 * 15 14 12 42 42 H 1.08994 * 109.49974 * 174.58417 * 16 15 14 43 43 H 1.09003 * 109.49895 * 294.65360 * 16 15 14 44 44 H 1.08991 * 109.46212 * 58.65545 * 17 16 15 45 45 H 1.09002 * 109.45659 * 178.63284 * 17 16 15 46 46 H 1.09001 * 109.47109 * 86.52583 * 21 20 18 47 47 H 1.08996 * 109.46960 * 206.53243 * 21 20 18 48 48 H 1.09006 * 109.46776 * 326.53389 * 21 20 18 49 49 H 0.97007 * 119.99931 * 180.02562 * 25 24 22 50 50 H 1.08999 * 109.58468 * 353.42231 * 30 14 12 51 51 H 1.08997 * 109.58628 * 113.70078 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7014 -0.6282 -3.4611 7 6 4.0604 -0.8065 -3.6699 8 6 4.4828 -1.5610 -4.7480 9 7 3.6106 -2.0989 -5.5780 10 6 2.3112 -1.9456 -5.4135 11 6 1.8147 -1.2091 -4.3548 12 6 2.0323 -0.7105 1.2304 13 8 2.6028 -1.7757 1.1252 14 7 1.8477 -0.1622 2.4477 15 6 1.2416 1.1690 2.5849 16 6 0.0521 1.0726 3.5455 17 6 0.5170 0.4544 4.8661 18 6 1.0500 -0.9582 4.6140 19 1 0.2651 -1.5663 4.1641 20 7 1.4689 -1.5597 5.8825 21 6 2.5177 -0.9239 6.6837 22 6 0.8799 -2.7163 6.3194 23 1 -0.1672 -2.8959 6.1251 24 6 1.6288 -3.6578 7.0118 25 7 1.0277 -4.5394 7.7824 26 14 3.4897 -3.6735 6.8503 27 1 4.0857 -2.8175 7.9073 28 1 3.9879 -5.0644 7.0004 29 1 3.8751 -3.1512 5.5147 30 6 2.2484 -0.8848 3.6627 31 1 -0.3633 0.5858 0.8444 32 1 -0.3633 0.4385 -0.9295 33 1 -0.3634 -1.0241 0.0850 34 1 1.2538 0.6547 -2.5589 35 1 2.9320 0.9513 -2.0451 36 1 4.7798 -0.3651 -2.9960 37 1 5.5396 -1.7087 -4.9149 38 1 1.6271 -2.4016 -6.1138 39 1 0.7494 -1.0868 -4.2256 40 1 1.9780 1.8665 2.9841 41 1 0.8972 1.5159 1.6107 42 1 -0.3473 2.0695 3.7313 43 1 -0.7229 0.4466 3.1032 44 1 1.3089 1.0679 5.2954 45 1 -0.3223 0.4070 5.5601 46 1 2.0720 -0.1720 7.3349 47 1 3.0195 -1.6782 7.2897 48 1 3.2420 -0.4483 6.0223 49 1 1.5510 -5.1971 8.2666 50 1 2.5685 -1.8929 3.3995 51 1 3.0687 -0.3562 4.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731713736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:04 Heat of formation + Delta-G solvation = -3.934050 kcal Electronic energy + Delta-G solvation = -31024.767011 eV Core-core repulsion = 26925.749638 eV Total energy + Delta-G solvation = -4099.017373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.60565 -40.26779 -38.36850 -37.22996 -35.39259 -33.78888 -32.56727 -31.66364 -31.53100 -31.34259 -29.26573 -27.25195 -26.24347 -25.76700 -24.11888 -23.79139 -23.25867 -22.32708 -21.72591 -19.92215 -18.75704 -17.85852 -17.07372 -16.87899 -16.82313 -16.63498 -15.93410 -15.64605 -15.57284 -15.37597 -14.89859 -14.43187 -14.31778 -14.11494 -13.98297 -13.91203 -13.63076 -13.28154 -13.20030 -12.83896 -12.57398 -12.53874 -12.39194 -12.29375 -12.23023 -12.14109 -11.86537 -11.55618 -11.40834 -11.10696 -10.69766 -10.57074 -10.44534 -10.22651 -10.07814 -10.07160 -9.91896 -9.80964 -9.58299 -9.46366 -9.42130 -8.53217 -8.47840 -6.90258 -6.00315 -3.41627 0.79548 0.82617 2.65564 2.73898 3.29339 3.39217 3.49056 3.53484 3.74412 4.15329 4.24282 4.32092 4.42481 4.50806 4.56193 4.68407 4.71182 4.75167 4.80276 4.92706 4.96702 4.98838 5.08023 5.14039 5.27228 5.28549 5.28933 5.38610 5.42313 5.45533 5.58842 5.61406 5.69112 5.77811 5.83996 5.95853 6.01226 6.05242 6.17878 6.27188 6.33558 6.35797 6.44655 6.53751 6.67346 6.73307 6.81872 6.85156 7.51092 7.64487 8.00466 8.28472 8.34117 8.93783 9.68086 10.05208 11.15178 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.002418 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.368689 B =11577.680538 C =12658.005849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 H 0.084 0.916 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.512 3.488 13 O -0.517 6.517 14 N -0.605 5.605 15 C 0.100 3.900 16 C -0.132 4.132 17 C -0.131 4.131 18 C 0.167 3.833 19 H 0.075 0.925 20 N -0.601 5.601 21 C 0.104 3.896 22 C -0.269 4.269 23 H 0.082 0.918 24 C 0.033 3.967 25 N -0.901 5.901 26 Si 0.886 3.114 27 H -0.285 1.285 28 H -0.302 1.302 29 H -0.270 1.270 30 C 0.094 3.906 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.018 0.982 47 H 0.050 0.950 48 H 0.029 0.971 49 H 0.264 0.736 50 H 0.092 0.908 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 17.481 -21.937 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.012 3.988 3 H 0.101 0.899 4 O -0.266 6.266 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.171 4.171 12 C 0.297 3.703 13 O -0.392 6.392 14 N -0.340 5.340 15 C -0.023 4.023 16 C -0.171 4.171 17 C -0.171 4.171 18 C 0.059 3.941 19 H 0.093 0.907 20 N -0.324 5.324 21 C -0.040 4.040 22 C -0.397 4.397 23 H 0.099 0.901 24 C -0.168 4.168 25 N -0.542 5.542 26 Si 0.717 3.283 27 H -0.214 1.214 28 H -0.231 1.231 29 H -0.194 1.194 30 C -0.029 4.029 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.036 0.964 47 H 0.068 0.932 48 H 0.047 0.953 49 H 0.074 0.926 50 H 0.110 0.890 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.996 16.026 -22.571 27.700 hybrid contribution 0.732 0.726 0.864 1.345 sum 1.728 16.752 -21.707 27.474 Atomic orbital electron populations 1.22367 0.93284 1.04481 1.03208 1.21940 0.95340 0.96019 0.85542 0.89866 1.88153 1.86579 1.33435 1.18419 1.21412 1.00035 0.91668 0.84745 1.19958 0.93702 0.96823 0.94697 1.22115 0.95870 0.99901 0.99048 1.22790 0.99757 0.92995 0.90499 1.67674 1.03406 1.19513 1.28619 1.22783 0.91979 0.95307 0.96091 1.22084 1.01021 0.98224 0.95758 1.20250 0.79921 0.86085 0.84006 1.90746 1.40832 1.21874 1.85705 1.48162 1.61554 1.18428 1.05882 1.21908 0.95832 0.84156 1.00354 1.21927 0.97235 1.01316 0.96633 1.22037 1.01252 0.97890 0.95903 1.20768 0.94438 0.92780 0.86144 0.90720 1.44088 1.44087 1.26787 1.17453 1.21421 0.91214 0.96784 0.94581 1.18810 0.93954 0.93774 1.33168 0.90084 1.25433 0.97849 0.95685 0.97795 1.69841 1.35789 1.20409 1.28149 0.86913 0.87402 0.75434 0.78575 1.21400 1.23060 1.19442 1.22517 0.99021 0.97939 0.83422 0.90092 0.91304 0.90748 0.91682 0.91825 0.84561 0.82503 0.82526 0.84559 0.91312 0.90079 0.90994 0.91389 0.92408 0.91262 0.96416 0.93203 0.95284 0.92622 0.88982 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.16 37.16 0.34 -1.20 16 2 C 0.07 0.80 2.28 -27.88 -0.06 0.74 16 3 H 0.08 0.65 6.96 -51.93 -0.36 0.29 16 4 O -0.35 -4.39 9.52 -55.01 -0.52 -4.92 16 5 C 0.10 0.83 5.92 36.01 0.21 1.04 16 6 C -0.04 -0.41 5.55 -104.32 -0.58 -0.99 16 7 C -0.15 -1.38 9.82 -39.44 -0.39 -1.77 16 8 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 9 N -0.48 -5.19 10.36 -13.25 -0.14 -5.33 16 10 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 11 C -0.15 -1.30 9.82 -39.45 -0.39 -1.69 16 12 C 0.51 8.06 7.06 -10.99 -0.08 7.99 16 13 O -0.52 -10.90 15.95 -14.22 -0.23 -11.13 16 14 N -0.60 -8.76 2.97 -172.77 -0.51 -9.27 16 15 C 0.10 1.00 5.58 -3.71 -0.02 0.98 16 16 C -0.13 -1.40 5.93 -26.61 -0.16 -1.56 16 17 C -0.13 -1.94 5.15 -26.67 -0.14 -2.07 16 18 C 0.17 3.18 2.75 -67.79 -0.19 3.00 16 19 H 0.07 1.54 7.89 -51.93 -0.41 1.13 16 20 N -0.60 -14.00 2.43 -173.32 -0.42 -14.42 16 21 C 0.10 2.23 8.51 59.85 0.51 2.74 16 22 C -0.27 -7.49 9.87 -15.06 -0.15 -7.64 16 23 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 24 C 0.03 0.96 5.32 -17.43 -0.09 0.87 16 25 N -0.90 -27.68 13.97 55.49 0.78 -26.91 16 26 Si 0.89 22.78 25.02 -169.99 -4.25 18.52 16 27 H -0.29 -7.01 6.47 56.52 0.37 -6.64 16 28 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 29 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 30 C 0.09 1.72 5.77 -3.71 -0.02 1.70 16 31 H 0.08 0.60 5.40 -51.93 -0.28 0.32 16 32 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.39 7.75 -51.93 -0.40 -0.01 16 35 H 0.06 0.43 8.04 -51.93 -0.42 0.01 16 36 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.57 4.39 -51.93 -0.23 0.34 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 44 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.05 1.18 2.87 -51.93 -0.15 1.03 16 48 H 0.03 0.54 6.35 -51.93 -0.33 0.21 16 49 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 50 H 0.09 2.03 7.03 -51.93 -0.37 1.67 16 51 H 0.06 1.07 6.48 -51.93 -0.34 0.74 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -36.36 397.56 -8.79 -45.15 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.89 Total: -1.19 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.59 Total: 3.49 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.30 Total: -55.93 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.75 Total: -16.04 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.25 Total: 18.52 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.36 -8.79 -45.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731713736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.217 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds