Wall clock time and date at job start Wed Apr 1 2020 04:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47405 * 2 1 4 4 O 1.42902 * 109.46877 * 240.00168 * 2 1 3 5 5 C 1.42898 * 114.00239 * 90.00006 * 4 2 1 6 6 C 1.50703 * 109.47352 * 179.97438 * 5 4 2 7 7 C 1.38646 * 120.78935 * 269.72278 * 6 5 4 8 8 C 1.38207 * 119.16118 * 179.75763 * 7 6 5 9 9 N 1.31868 * 120.76488 * 0.52842 * 8 7 6 10 10 C 1.31873 * 121.72239 * 359.74331 * 9 8 7 11 11 C 1.38197 * 120.76485 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.46938 * 120.00443 * 2 1 3 13 13 O 1.21285 * 119.99967 * 111.83365 * 12 2 1 14 14 N 1.34775 * 119.99915 * 291.82862 * 12 2 1 15 15 C 1.46920 * 120.62913 * 355.78875 * 14 12 2 16 16 C 1.53192 * 108.77639 * 126.36842 * 15 14 12 17 17 C 1.53042 * 109.31147 * 54.63496 * 16 15 14 18 18 C 1.53076 * 109.65669 * 298.69922 * 17 16 15 19 19 H 1.09000 * 109.39125 * 301.28107 * 18 17 16 20 20 N 1.46503 * 109.62239 * 181.16895 * 18 17 16 21 21 C 1.46498 * 120.00347 * 300.10973 * 20 18 17 22 22 C 1.36943 * 119.99846 * 120.10716 * 20 18 17 23 23 H 1.08002 * 120.00211 * 325.04525 * 22 20 18 24 24 C 1.38810 * 119.99997 * 145.04127 * 22 20 18 25 25 N 1.31615 * 119.99988 * 158.72141 * 24 22 20 26 26 Si 1.86800 * 119.99990 * 338.72956 * 24 22 20 27 27 H 1.48504 * 109.47209 * 90.97785 * 26 24 22 28 28 H 1.48502 * 109.47015 * 210.97547 * 26 24 22 29 29 H 1.48497 * 109.47251 * 330.97734 * 26 24 22 30 30 C 1.46929 * 120.63003 * 175.76464 * 14 12 2 31 31 H 1.08997 * 109.46940 * 304.75085 * 1 2 3 32 32 H 1.09002 * 109.47050 * 64.74522 * 1 2 3 33 33 H 1.09001 * 109.47292 * 184.74664 * 1 2 3 34 34 H 1.09000 * 109.47280 * 300.00144 * 5 4 2 35 35 H 1.09000 * 109.47124 * 60.00109 * 5 4 2 36 36 H 1.08006 * 120.42234 * 0.02562 * 7 6 5 37 37 H 1.08006 * 119.61749 * 180.29460 * 8 7 6 38 38 H 1.07999 * 119.61550 * 180.02562 * 10 9 8 39 39 H 1.08007 * 120.41960 * 179.97438 * 11 10 9 40 40 H 1.09003 * 109.58683 * 246.15559 * 15 14 12 41 41 H 1.09003 * 109.58924 * 6.58203 * 15 14 12 42 42 H 1.08994 * 109.49974 * 174.58417 * 16 15 14 43 43 H 1.09003 * 109.49895 * 294.65360 * 16 15 14 44 44 H 1.08991 * 109.46212 * 58.65545 * 17 16 15 45 45 H 1.09002 * 109.45659 * 178.63284 * 17 16 15 46 46 H 1.09001 * 109.47109 * 86.52583 * 21 20 18 47 47 H 1.08996 * 109.46960 * 206.53243 * 21 20 18 48 48 H 1.09006 * 109.46776 * 326.53389 * 21 20 18 49 49 H 0.97007 * 119.99931 * 180.02562 * 25 24 22 50 50 H 1.08999 * 109.58468 * 353.42231 * 30 14 12 51 51 H 1.08997 * 109.58628 * 113.70078 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7014 -0.6282 -3.4611 7 6 4.0604 -0.8065 -3.6699 8 6 4.4828 -1.5610 -4.7480 9 7 3.6106 -2.0989 -5.5780 10 6 2.3112 -1.9456 -5.4135 11 6 1.8147 -1.2091 -4.3548 12 6 2.0323 -0.7105 1.2304 13 8 2.6028 -1.7757 1.1252 14 7 1.8477 -0.1622 2.4477 15 6 1.2416 1.1690 2.5849 16 6 0.0521 1.0726 3.5455 17 6 0.5170 0.4544 4.8661 18 6 1.0500 -0.9582 4.6140 19 1 0.2651 -1.5663 4.1641 20 7 1.4689 -1.5597 5.8825 21 6 2.5177 -0.9239 6.6837 22 6 0.8799 -2.7163 6.3194 23 1 -0.1672 -2.8959 6.1251 24 6 1.6288 -3.6578 7.0118 25 7 1.0277 -4.5394 7.7824 26 14 3.4897 -3.6735 6.8503 27 1 4.0857 -2.8175 7.9073 28 1 3.9879 -5.0644 7.0004 29 1 3.8751 -3.1512 5.5147 30 6 2.2484 -0.8848 3.6627 31 1 -0.3633 0.5858 0.8444 32 1 -0.3633 0.4385 -0.9295 33 1 -0.3634 -1.0241 0.0850 34 1 1.2538 0.6547 -2.5589 35 1 2.9320 0.9513 -2.0451 36 1 4.7798 -0.3651 -2.9960 37 1 5.5396 -1.7087 -4.9149 38 1 1.6271 -2.4016 -6.1138 39 1 0.7494 -1.0868 -4.2256 40 1 1.9780 1.8665 2.9841 41 1 0.8972 1.5159 1.6107 42 1 -0.3473 2.0695 3.7313 43 1 -0.7229 0.4466 3.1032 44 1 1.3089 1.0679 5.2954 45 1 -0.3223 0.4070 5.5601 46 1 2.0720 -0.1720 7.3349 47 1 3.0195 -1.6782 7.2897 48 1 3.2420 -0.4483 6.0223 49 1 1.5510 -5.1971 8.2666 50 1 2.5685 -1.8929 3.3995 51 1 3.0687 -0.3562 4.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731713736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:02 Heat of formation + Delta-G solvation = -28.837781 kcal Electronic energy + Delta-G solvation = -31025.846918 eV Core-core repulsion = 26925.749638 eV Total energy + Delta-G solvation = -4100.097280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57446 -41.08419 -39.43431 -38.44661 -36.95154 -34.59697 -34.09523 -33.13035 -32.42539 -32.16464 -30.60787 -28.11756 -27.89959 -26.88583 -25.59543 -24.46743 -24.33538 -23.02009 -22.96263 -21.29327 -19.94923 -18.95754 -18.71650 -17.93123 -17.60004 -17.48037 -17.41426 -16.71789 -16.55508 -16.50152 -15.98331 -15.63666 -15.45220 -15.28127 -14.97357 -14.76619 -14.58304 -14.48384 -14.38013 -14.21212 -14.11533 -14.03167 -13.63790 -13.49021 -13.29410 -13.00902 -12.93194 -12.60575 -12.48863 -12.33027 -12.22857 -12.05634 -11.86118 -11.74687 -11.62661 -11.44886 -11.02969 -10.76472 -10.64697 -10.49967 -10.47954 -10.10812 -9.75508 -8.81761 -8.25532 -5.61999 0.12206 0.17960 1.21473 1.37485 1.46331 1.50841 1.72292 2.34685 2.62176 3.01777 3.04677 3.30259 3.39966 3.56667 3.70623 3.76034 3.87683 3.94099 3.99202 4.07346 4.08574 4.10606 4.17136 4.18921 4.30476 4.38633 4.43031 4.51287 4.57185 4.65048 4.68363 4.69698 4.75014 4.79606 4.85311 4.86520 4.88502 4.96837 4.97287 5.01617 5.16670 5.23850 5.32840 5.43191 5.45295 5.51474 5.73773 5.86782 6.01330 6.09874 6.42504 6.91339 6.98215 7.13453 7.56916 7.95894 8.94468 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.002418 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.368689 B =11577.680538 C =12658.005849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.081 3.919 3 H 0.129 0.871 4 O -0.386 6.386 5 C 0.095 3.905 6 C -0.061 4.061 7 C -0.160 4.160 8 C 0.081 3.919 9 N -0.512 5.512 10 C 0.082 3.918 11 C -0.154 4.154 12 C 0.500 3.500 13 O -0.586 6.586 14 N -0.601 5.601 15 C 0.094 3.906 16 C -0.125 4.125 17 C -0.122 4.122 18 C 0.165 3.835 19 H 0.043 0.957 20 N -0.617 5.617 21 C 0.103 3.897 22 C -0.256 4.256 23 H 0.044 0.956 24 C -0.025 4.025 25 N -0.949 5.949 26 Si 0.948 3.052 27 H -0.261 1.261 28 H -0.313 1.313 29 H -0.272 1.272 30 C 0.106 3.894 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.159 0.841 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.028 0.972 48 H 0.059 0.941 49 H 0.263 0.737 50 H 0.041 0.959 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 22.164 -23.490 32.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.021 3.979 3 H 0.146 0.854 4 O -0.305 6.305 5 C 0.020 3.980 6 C -0.069 4.069 7 C -0.180 4.180 8 C -0.075 4.075 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.173 4.173 12 C 0.289 3.711 13 O -0.466 6.466 14 N -0.335 5.335 15 C -0.026 4.026 16 C -0.164 4.164 17 C -0.161 4.161 18 C 0.058 3.942 19 H 0.062 0.938 20 N -0.341 5.341 21 C -0.041 4.041 22 C -0.386 4.386 23 H 0.062 0.938 24 C -0.221 4.221 25 N -0.593 5.593 26 Si 0.778 3.222 27 H -0.188 1.188 28 H -0.242 1.242 29 H -0.197 1.197 30 C -0.018 4.018 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.191 0.809 38 H 0.196 0.804 39 H 0.177 0.823 40 H 0.111 0.889 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.060 0.940 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.017 20.810 -24.143 31.890 hybrid contribution 0.620 -0.699 1.282 1.587 sum 1.637 20.110 -22.861 30.492 Atomic orbital electron populations 1.22391 0.91432 1.03249 1.05798 1.22011 0.96379 0.96819 0.82722 0.85358 1.88116 1.86994 1.35660 1.19701 1.21652 1.02153 0.91210 0.83008 1.20301 0.93929 0.97246 0.95411 1.22349 0.96505 0.99979 0.99175 1.23139 1.00603 0.93095 0.90641 1.67684 1.04404 1.20483 1.29579 1.23228 0.91889 0.95458 0.96850 1.22378 1.02177 0.97544 0.95249 1.21371 0.78643 0.85474 0.85653 1.90713 1.43997 1.25072 1.86790 1.48223 1.61163 1.19770 1.04359 1.22347 0.95908 0.81697 1.02665 1.21931 0.97415 1.02995 0.94020 1.21903 1.00947 0.94815 0.98459 1.20871 0.93969 0.94829 0.84496 0.93849 1.44203 1.44537 1.25825 1.19514 1.21475 0.91151 0.96430 0.95004 1.18710 0.92695 0.95314 1.31889 0.93843 1.26044 1.02054 0.95842 0.98171 1.69962 1.37355 1.21950 1.30070 0.85887 0.82367 0.75057 0.78888 1.18775 1.24160 1.19683 1.21999 0.98577 0.96238 0.85036 0.88250 0.87958 0.93879 0.88628 0.89941 0.83416 0.80893 0.80446 0.82324 0.88904 0.85994 0.86818 0.91819 0.91000 0.92716 0.94557 0.95365 0.92292 0.92755 0.94015 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.16 71.98 0.66 -1.67 16 2 C 0.08 1.50 2.28 29.85 0.07 1.57 16 3 H 0.13 1.20 6.96 -2.39 -0.02 1.18 16 4 O -0.39 -8.89 9.52 -130.07 -1.24 -10.12 16 5 C 0.10 1.28 5.92 71.24 0.42 1.70 16 6 C -0.06 -1.04 5.55 -19.67 -0.11 -1.15 16 7 C -0.16 -2.82 9.82 22.36 0.22 -2.60 16 8 C 0.08 1.51 11.18 84.68 0.95 2.46 16 9 N -0.51 -10.89 10.36 -195.84 -2.03 -12.92 16 10 C 0.08 1.41 11.18 84.68 0.95 2.36 16 11 C -0.15 -2.39 9.82 22.36 0.22 -2.17 16 12 C 0.50 15.24 7.06 87.66 0.62 15.86 16 13 O -0.59 -25.67 15.95 15.86 0.25 -25.41 16 14 N -0.60 -16.19 2.97 -818.91 -2.44 -18.62 16 15 C 0.09 1.37 5.58 86.36 0.48 1.86 16 16 C -0.13 -2.07 5.93 30.67 0.18 -1.89 16 17 C -0.12 -3.29 5.15 30.63 0.16 -3.13 16 18 C 0.17 6.32 2.75 45.08 0.12 6.44 16 19 H 0.04 1.89 7.89 -2.39 -0.02 1.87 16 20 N -0.62 -29.03 2.43 -702.27 -1.71 -30.74 16 21 C 0.10 4.25 8.51 127.77 1.09 5.33 16 22 C -0.26 -14.91 9.87 84.03 0.83 -14.08 16 23 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 24 C -0.02 -1.49 5.32 84.86 0.45 -1.04 16 25 N -0.95 -60.86 13.97 21.65 0.30 -60.56 16 26 Si 0.95 48.52 25.02 68.60 1.72 50.24 16 27 H -0.26 -12.21 6.47 99.48 0.64 -11.56 16 28 H -0.31 -16.36 7.11 99.48 0.71 -15.65 16 29 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 30 C 0.11 3.85 5.77 86.36 0.50 4.35 16 31 H 0.10 0.95 5.40 -2.39 -0.01 0.94 16 32 H 0.10 0.75 7.79 -2.39 -0.02 0.73 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.67 7.75 -2.39 -0.02 0.65 16 35 H 0.08 0.77 8.04 -2.39 -0.02 0.75 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.12 0.85 4.39 -2.39 -0.01 0.84 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.15 7.81 -2.39 -0.02 1.13 16 44 H 0.07 1.76 7.71 -2.39 -0.02 1.74 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.03 1.29 2.87 -2.39 -0.01 1.28 16 48 H 0.06 2.05 6.35 -2.38 -0.02 2.04 16 49 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 50 H 0.04 1.93 7.03 -2.39 -0.02 1.91 16 51 H 0.07 2.41 6.48 -2.39 -0.02 2.39 16 Total: -1.00 -88.46 397.56 3.53 -84.92 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.87 Total: 9.00 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 7.80 Total: 14.21 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -5.87 Total: -122.83 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.98 Total: -35.54 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.72 Total: 50.24 kcal Total: -88.46 3.53 -84.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731713736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.087 kcal (2) G-P(sol) polarization free energy of solvation -88.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds