Wall clock time and date at job start Wed Apr 1 2020 04:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47443 * 2 1 4 4 O 1.42897 * 109.47248 * 120.00646 * 2 1 3 5 5 C 1.42899 * 113.99963 * 269.99662 * 4 2 1 6 6 C 1.50698 * 109.47374 * 179.97438 * 5 4 2 7 7 C 1.38647 * 120.79009 * 269.72290 * 6 5 4 8 8 C 1.38207 * 119.16124 * 179.75583 * 7 6 5 9 9 N 1.31862 * 120.76421 * 0.52774 * 8 7 6 10 10 C 1.31871 * 121.72915 * 359.74022 * 9 8 7 11 11 C 1.38207 * 120.75998 * 359.97438 * 10 9 8 12 12 C 1.50705 * 109.47056 * 240.00262 * 2 1 3 13 13 O 1.21274 * 120.00325 * 245.00577 * 12 2 1 14 14 N 1.34784 * 119.99817 * 65.00138 * 12 2 1 15 15 C 1.46925 * 120.63124 * 359.71838 * 14 12 2 16 16 C 1.53187 * 108.77438 * 126.66399 * 15 14 12 17 17 C 1.53046 * 109.30995 * 54.63706 * 16 15 14 18 18 C 1.53039 * 109.53959 * 298.63670 * 17 16 15 19 19 H 1.09000 * 109.51939 * 301.39307 * 18 17 16 20 20 N 1.46498 * 109.49536 * 181.31839 * 18 17 16 21 21 C 1.46494 * 119.99845 * 300.15480 * 20 18 17 22 22 C 1.36936 * 120.00117 * 120.16130 * 20 18 17 23 23 H 1.08001 * 120.00275 * 21.98996 * 22 20 18 24 24 C 1.38807 * 120.00000 * 201.98941 * 22 20 18 25 25 N 1.31621 * 120.00190 * 12.67783 * 24 22 20 26 26 Si 1.86797 * 120.00225 * 192.67954 * 24 22 20 27 27 H 1.48508 * 109.47034 * 60.00075 * 26 24 22 28 28 H 1.48499 * 109.47470 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47397 * 300.00270 * 26 24 22 30 30 C 1.46926 * 120.62949 * 180.02562 * 14 12 2 31 31 H 1.09007 * 109.46868 * 59.98971 * 1 2 3 32 32 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46553 * 300.00283 * 1 2 3 34 34 H 1.09005 * 109.46752 * 299.99953 * 5 4 2 35 35 H 1.08997 * 109.47113 * 59.99431 * 5 4 2 36 36 H 1.08000 * 120.41979 * 359.97438 * 7 6 5 37 37 H 1.08004 * 119.61595 * 180.29315 * 8 7 6 38 38 H 1.07997 * 119.61918 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.41553 * 180.02562 * 11 10 9 40 40 H 1.08996 * 109.59091 * 246.45660 * 15 14 12 41 41 H 1.09000 * 109.58554 * 6.88390 * 15 14 12 42 42 H 1.09002 * 109.50374 * 294.69019 * 16 15 14 43 43 H 1.09003 * 109.52732 * 174.60484 * 16 15 14 44 44 H 1.09003 * 109.45677 * 178.61282 * 17 16 15 45 45 H 1.09003 * 109.44556 * 58.64728 * 17 16 15 46 46 H 1.08998 * 109.47466 * 94.33892 * 21 20 18 47 47 H 1.09003 * 109.47552 * 214.33753 * 21 20 18 48 48 H 1.09000 * 109.47719 * 334.33756 * 21 20 18 49 49 H 0.97000 * 120.00339 * 179.97438 * 25 24 22 50 50 H 1.08995 * 109.58346 * 353.11574 * 30 14 12 51 51 H 1.08990 * 109.58890 * 113.40096 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1827 2.2940 6 6 2.7003 -0.6287 3.4612 7 6 1.8130 -1.2041 4.3578 8 6 2.3084 -1.9459 5.4135 9 7 3.6075 -2.1000 5.5785 10 6 4.4806 -1.5628 4.7490 11 6 4.0590 -0.8129 3.6673 12 6 2.0323 -0.7104 -1.2305 13 8 2.6528 -1.7467 -1.1217 14 7 1.7918 -0.1940 -2.4521 15 6 1.0362 1.0573 -2.6004 16 6 1.8581 2.0319 -3.4496 17 6 2.2288 1.3607 -4.7742 18 6 3.0831 0.1212 -4.4984 19 1 3.9806 0.4116 -3.9524 20 7 3.4635 -0.5027 -5.7681 21 6 2.4288 -0.9806 -6.6884 22 6 4.7864 -0.6392 -6.0946 23 1 5.5378 -0.6301 -5.3190 24 6 5.1616 -0.7894 -7.4226 25 7 4.2926 -0.5537 -8.3827 26 14 6.8997 -1.3261 -7.8472 27 1 7.1675 -2.6574 -7.2460 28 1 7.0453 -1.4104 -9.3226 29 1 7.8683 -0.3367 -7.3104 30 6 2.2746 -0.8753 -3.6610 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3632 0.5139 0.8900 34 1 2.9321 0.9511 2.0449 35 1 1.2539 0.6545 2.5588 36 1 0.7480 -1.0774 4.2307 37 1 1.6236 -2.4014 6.1135 38 1 5.5372 -1.7105 4.9168 39 1 4.7788 -0.3758 2.9912 40 1 0.0860 0.8540 -3.0942 41 1 0.8541 1.4928 -1.6179 42 1 2.7670 2.3047 -2.9133 43 1 1.2699 2.9279 -3.6479 44 1 2.7928 2.0607 -5.3906 45 1 1.3197 1.0658 -5.2984 46 1 2.2092 -0.2054 -7.4225 47 1 2.7828 -1.8756 -7.2002 48 1 1.5244 -1.2166 -6.1276 49 1 4.5549 -0.6583 -9.3107 50 1 2.9096 -1.7148 -3.3784 51 1 1.4254 -1.2381 -4.2398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731713737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:07 Heat of formation + Delta-G solvation = -9.379290 kcal Electronic energy + Delta-G solvation = -30823.281875 eV Core-core repulsion = 26724.028378 eV Total energy + Delta-G solvation = -4099.253497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.58186 -40.23074 -38.30066 -37.12923 -35.20728 -33.78366 -32.58622 -31.52130 -31.50407 -31.08201 -28.63780 -27.23882 -26.04073 -25.73732 -23.87747 -23.76105 -23.24488 -22.31705 -21.62832 -19.81325 -18.76711 -17.78653 -17.03992 -16.84054 -16.75839 -16.54765 -15.93798 -15.75372 -15.36868 -14.95843 -14.73431 -14.22206 -14.17199 -14.05658 -13.96067 -13.74673 -13.61868 -13.28361 -13.11616 -12.84436 -12.65947 -12.45732 -12.27906 -12.24926 -11.95563 -11.85533 -11.54201 -11.04485 -10.96527 -10.86021 -10.65358 -10.43373 -10.33614 -10.20919 -10.15326 -10.05706 -9.89515 -9.79616 -9.77928 -9.44792 -9.38274 -8.62443 -8.36976 -6.77512 -5.72791 -3.18600 0.80987 0.84172 2.70732 2.75602 3.39807 3.41630 3.45124 3.47648 3.76302 4.16677 4.26605 4.34277 4.45084 4.49234 4.59173 4.70438 4.75091 4.81112 4.86268 4.94526 5.00709 5.06377 5.19303 5.28761 5.31094 5.37184 5.42709 5.47320 5.48729 5.51944 5.62955 5.71401 5.81269 5.82299 5.94906 5.98022 6.10930 6.19496 6.34070 6.37323 6.46697 6.58227 6.70600 6.80592 6.92103 6.97269 7.38082 7.55845 7.65786 7.71340 7.81252 8.31131 8.39834 9.23035 9.85561 10.33401 11.32031 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.002270 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.889451 B =12333.553856 C =13670.175282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 H 0.086 0.914 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.043 4.043 7 C -0.152 4.152 8 C 0.094 3.906 9 N -0.483 5.483 10 C 0.097 3.903 11 C -0.148 4.148 12 C 0.512 3.488 13 O -0.520 6.520 14 N -0.603 5.603 15 C 0.102 3.898 16 C -0.133 4.133 17 C -0.132 4.132 18 C 0.170 3.830 19 H 0.064 0.936 20 N -0.593 5.593 21 C 0.162 3.838 22 C -0.255 4.255 23 H 0.068 0.932 24 C 0.002 3.998 25 N -0.908 5.908 26 Si 0.906 3.094 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.098 3.902 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.030 0.970 47 H 0.044 0.956 48 H -0.002 1.002 49 H 0.253 0.747 50 H 0.090 0.910 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.536 6.744 22.706 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.011 3.989 3 H 0.104 0.896 4 O -0.266 6.266 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.172 4.172 8 C -0.063 4.063 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.168 4.168 12 C 0.298 3.702 13 O -0.395 6.395 14 N -0.338 5.338 15 C -0.021 4.021 16 C -0.172 4.172 17 C -0.172 4.172 18 C 0.060 3.940 19 H 0.083 0.917 20 N -0.314 5.314 21 C 0.018 3.982 22 C -0.384 4.384 23 H 0.086 0.914 24 C -0.196 4.196 25 N -0.553 5.553 26 Si 0.735 3.265 27 H -0.210 1.210 28 H -0.216 1.216 29 H -0.210 1.210 30 C -0.025 4.025 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.156 0.844 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.062 0.938 48 H 0.016 0.984 49 H 0.063 0.937 50 H 0.108 0.892 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.817 5.445 23.247 25.815 hybrid contribution 0.473 0.615 -1.228 1.452 sum -9.345 6.060 22.018 24.675 Atomic orbital electron populations 1.22425 0.93563 1.04195 1.03403 1.21924 0.95126 0.96287 0.85611 0.89603 1.88137 1.86601 1.33426 1.18420 1.21415 1.00061 0.91706 0.84696 1.19961 0.93712 0.96798 0.94688 1.22072 1.00942 0.98339 0.95823 1.22769 0.92005 0.95374 0.96104 1.67667 1.03372 1.19572 1.28638 1.22800 0.99766 0.92995 0.90447 1.22141 0.95927 0.99735 0.99007 1.20210 0.80324 0.85689 0.83981 1.90729 1.39655 1.23273 1.85852 1.48126 1.55085 1.24680 1.05944 1.21955 0.95060 0.84632 1.00475 1.21957 0.99994 0.97677 0.97598 1.22127 1.00683 0.99022 0.95367 1.20576 0.95280 0.90051 0.88062 0.91728 1.43883 1.03393 1.67654 1.16494 1.20790 0.87540 0.98702 0.91169 1.19186 0.83157 1.44755 0.91325 0.91442 1.24985 0.97690 1.01066 0.95830 1.70060 1.33986 1.52377 0.98908 0.86320 0.84287 0.78864 0.76983 1.21009 1.21642 1.20972 1.22452 0.99104 0.97346 0.83626 0.90026 0.90944 0.91349 0.91688 0.91744 0.84632 0.82588 0.82458 0.84440 0.91153 0.90168 0.91779 0.91185 0.91403 0.92392 0.95203 0.93758 0.98387 0.93717 0.89197 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.10 37.16 0.34 -1.11 16 2 C 0.07 0.79 2.30 -27.88 -0.06 0.72 16 3 H 0.09 0.72 7.09 -51.93 -0.37 0.35 16 4 O -0.35 -4.37 9.51 -55.09 -0.52 -4.89 16 5 C 0.10 0.84 5.92 36.00 0.21 1.06 16 6 C -0.04 -0.41 5.55 -104.32 -0.58 -0.99 16 7 C -0.15 -1.29 9.82 -39.44 -0.39 -1.67 16 8 C 0.09 0.84 11.18 -17.55 -0.20 0.64 16 9 N -0.48 -5.19 10.36 -13.25 -0.14 -5.33 16 10 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 11 C -0.15 -1.40 9.82 -39.44 -0.39 -1.79 16 12 C 0.51 8.00 7.12 -10.98 -0.08 7.93 16 13 O -0.52 -10.72 15.92 -14.30 -0.23 -10.95 16 14 N -0.60 -8.84 2.97 -172.76 -0.51 -9.35 16 15 C 0.10 1.08 4.96 -3.71 -0.02 1.06 16 16 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 17 C -0.13 -2.20 5.14 -26.69 -0.14 -2.34 16 18 C 0.17 3.39 2.74 -67.80 -0.19 3.20 16 19 H 0.06 1.37 7.86 -51.93 -0.41 0.97 16 20 N -0.59 -14.60 2.82 -173.34 -0.49 -15.09 16 21 C 0.16 3.91 8.02 59.84 0.48 4.39 16 22 C -0.25 -7.01 9.60 -15.06 -0.14 -7.15 16 23 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 24 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 25 N -0.91 -26.25 10.64 55.49 0.59 -25.66 16 26 Si 0.91 22.07 29.57 -169.99 -5.03 17.04 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 30 C 0.10 1.79 5.78 -3.70 -0.02 1.76 16 31 H 0.08 0.56 5.40 -51.92 -0.28 0.28 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 34 H 0.06 0.48 8.05 -51.93 -0.42 0.06 16 35 H 0.06 0.39 7.83 -51.93 -0.41 -0.01 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.61 4.66 -51.93 -0.24 0.36 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 0.97 7.71 -51.93 -0.40 0.57 16 46 H 0.03 0.77 7.41 -51.93 -0.38 0.39 16 47 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 48 H 0.00 -0.05 6.36 -51.93 -0.33 -0.38 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.09 1.90 7.01 -51.93 -0.36 1.54 16 51 H 0.06 1.16 6.50 -51.93 -0.34 0.82 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -34.94 402.56 -9.95 -44.89 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.07 Total: -1.39 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.61 Total: 4.66 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.55 Total: -55.43 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.75 Total: -15.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.94 -9.95 -44.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731713737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.507 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds