Wall clock time and date at job start Wed Apr 1 2020 04:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47443 * 2 1 4 4 O 1.42897 * 109.47248 * 120.00646 * 2 1 3 5 5 C 1.42899 * 113.99963 * 269.99662 * 4 2 1 6 6 C 1.50698 * 109.47374 * 179.97438 * 5 4 2 7 7 C 1.38647 * 120.79009 * 269.72290 * 6 5 4 8 8 C 1.38207 * 119.16124 * 179.75583 * 7 6 5 9 9 N 1.31862 * 120.76421 * 0.52774 * 8 7 6 10 10 C 1.31871 * 121.72915 * 359.74022 * 9 8 7 11 11 C 1.38207 * 120.75998 * 359.97438 * 10 9 8 12 12 C 1.50705 * 109.47056 * 240.00262 * 2 1 3 13 13 O 1.21274 * 120.00325 * 245.00577 * 12 2 1 14 14 N 1.34784 * 119.99817 * 65.00138 * 12 2 1 15 15 C 1.46925 * 120.63124 * 359.71838 * 14 12 2 16 16 C 1.53187 * 108.77438 * 126.66399 * 15 14 12 17 17 C 1.53046 * 109.30995 * 54.63706 * 16 15 14 18 18 C 1.53039 * 109.53959 * 298.63670 * 17 16 15 19 19 H 1.09000 * 109.51939 * 301.39307 * 18 17 16 20 20 N 1.46498 * 109.49536 * 181.31839 * 18 17 16 21 21 C 1.46494 * 119.99845 * 300.15480 * 20 18 17 22 22 C 1.36936 * 120.00117 * 120.16130 * 20 18 17 23 23 H 1.08001 * 120.00275 * 21.98996 * 22 20 18 24 24 C 1.38807 * 120.00000 * 201.98941 * 22 20 18 25 25 N 1.31621 * 120.00190 * 12.67783 * 24 22 20 26 26 Si 1.86797 * 120.00225 * 192.67954 * 24 22 20 27 27 H 1.48508 * 109.47034 * 60.00075 * 26 24 22 28 28 H 1.48499 * 109.47470 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47397 * 300.00270 * 26 24 22 30 30 C 1.46926 * 120.62949 * 180.02562 * 14 12 2 31 31 H 1.09007 * 109.46868 * 59.98971 * 1 2 3 32 32 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46553 * 300.00283 * 1 2 3 34 34 H 1.09005 * 109.46752 * 299.99953 * 5 4 2 35 35 H 1.08997 * 109.47113 * 59.99431 * 5 4 2 36 36 H 1.08000 * 120.41979 * 359.97438 * 7 6 5 37 37 H 1.08004 * 119.61595 * 180.29315 * 8 7 6 38 38 H 1.07997 * 119.61918 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.41553 * 180.02562 * 11 10 9 40 40 H 1.08996 * 109.59091 * 246.45660 * 15 14 12 41 41 H 1.09000 * 109.58554 * 6.88390 * 15 14 12 42 42 H 1.09002 * 109.50374 * 294.69019 * 16 15 14 43 43 H 1.09003 * 109.52732 * 174.60484 * 16 15 14 44 44 H 1.09003 * 109.45677 * 178.61282 * 17 16 15 45 45 H 1.09003 * 109.44556 * 58.64728 * 17 16 15 46 46 H 1.08998 * 109.47466 * 94.33892 * 21 20 18 47 47 H 1.09003 * 109.47552 * 214.33753 * 21 20 18 48 48 H 1.09000 * 109.47719 * 334.33756 * 21 20 18 49 49 H 0.97000 * 120.00339 * 179.97438 * 25 24 22 50 50 H 1.08995 * 109.58346 * 353.11574 * 30 14 12 51 51 H 1.08990 * 109.58890 * 113.40096 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1827 2.2940 6 6 2.7003 -0.6287 3.4612 7 6 1.8130 -1.2041 4.3578 8 6 2.3084 -1.9459 5.4135 9 7 3.6075 -2.1000 5.5785 10 6 4.4806 -1.5628 4.7490 11 6 4.0590 -0.8129 3.6673 12 6 2.0323 -0.7104 -1.2305 13 8 2.6528 -1.7467 -1.1217 14 7 1.7918 -0.1940 -2.4521 15 6 1.0362 1.0573 -2.6004 16 6 1.8581 2.0319 -3.4496 17 6 2.2288 1.3607 -4.7742 18 6 3.0831 0.1212 -4.4984 19 1 3.9806 0.4116 -3.9524 20 7 3.4635 -0.5027 -5.7681 21 6 2.4288 -0.9806 -6.6884 22 6 4.7864 -0.6392 -6.0946 23 1 5.5378 -0.6301 -5.3190 24 6 5.1616 -0.7894 -7.4226 25 7 4.2926 -0.5537 -8.3827 26 14 6.8997 -1.3261 -7.8472 27 1 7.1675 -2.6574 -7.2460 28 1 7.0453 -1.4104 -9.3226 29 1 7.8683 -0.3367 -7.3104 30 6 2.2746 -0.8753 -3.6610 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3632 0.5139 0.8900 34 1 2.9321 0.9511 2.0449 35 1 1.2539 0.6545 2.5588 36 1 0.7480 -1.0774 4.2307 37 1 1.6236 -2.4014 6.1135 38 1 5.5372 -1.7105 4.9168 39 1 4.7788 -0.3758 2.9912 40 1 0.0860 0.8540 -3.0942 41 1 0.8541 1.4928 -1.6179 42 1 2.7670 2.3047 -2.9133 43 1 1.2699 2.9279 -3.6479 44 1 2.7928 2.0607 -5.3906 45 1 1.3197 1.0658 -5.2984 46 1 2.2092 -0.2054 -7.4225 47 1 2.7828 -1.8756 -7.2002 48 1 1.5244 -1.2166 -6.1276 49 1 4.5549 -0.6583 -9.3107 50 1 2.9096 -1.7148 -3.3784 51 1 1.4254 -1.2381 -4.2398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731713737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:06 Heat of formation + Delta-G solvation = -31.416798 kcal Electronic energy + Delta-G solvation = -30824.237493 eV Core-core repulsion = 26724.028378 eV Total energy + Delta-G solvation = -4100.209115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.54874 -41.07291 -39.36875 -38.38524 -36.84294 -34.61173 -33.98599 -32.87485 -32.25310 -32.15456 -30.15689 -28.07645 -27.89364 -26.87149 -25.36782 -24.45946 -24.34502 -23.01595 -22.96147 -21.15307 -20.07002 -18.84537 -18.61950 -17.87295 -17.59633 -17.41876 -17.14433 -16.63377 -16.47637 -16.28514 -15.88176 -15.71287 -15.30154 -15.09184 -15.07233 -14.77363 -14.56132 -14.49378 -14.22767 -14.06634 -13.85242 -13.72266 -13.42164 -13.29865 -12.97178 -12.86143 -12.79831 -12.53675 -12.45667 -12.29946 -12.27724 -12.10906 -11.94266 -11.78651 -11.62929 -11.39979 -11.01200 -10.75305 -10.69257 -10.48277 -10.46040 -10.09862 -9.73139 -8.78222 -7.85768 -5.33326 0.13036 0.18846 1.42329 1.45442 1.51676 1.55129 1.73264 2.47568 2.64158 3.05413 3.26910 3.40268 3.57551 3.60607 3.72753 3.76859 3.89882 3.96948 4.05119 4.08568 4.11496 4.12591 4.19774 4.21168 4.36384 4.39687 4.43711 4.57169 4.69012 4.70484 4.73611 4.76264 4.82652 4.86925 4.87587 4.90465 4.98146 5.02841 5.15662 5.24535 5.28538 5.34047 5.43199 5.48505 5.50252 5.62017 5.71379 5.74681 6.01794 6.30065 6.44451 6.99063 7.11902 7.15465 7.84294 8.26034 9.16564 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.002270 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.889451 B =12333.553856 C =13670.175282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.079 3.921 3 H 0.122 0.878 4 O -0.384 6.384 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.151 4.151 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.082 3.918 11 C -0.162 4.162 12 C 0.502 3.498 13 O -0.585 6.585 14 N -0.600 5.600 15 C 0.097 3.903 16 C -0.124 4.124 17 C -0.123 4.123 18 C 0.168 3.832 19 H 0.043 0.957 20 N -0.611 5.611 21 C 0.180 3.820 22 C -0.266 4.266 23 H 0.060 0.940 24 C -0.048 4.048 25 N -0.933 5.933 26 Si 0.966 3.034 27 H -0.284 1.284 28 H -0.289 1.289 29 H -0.275 1.275 30 C 0.113 3.887 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.144 0.856 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.042 0.958 45 H 0.059 0.941 46 H 0.009 0.991 47 H 0.012 0.988 48 H 0.030 0.970 49 H 0.249 0.751 50 H 0.050 0.950 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.789 9.082 24.654 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.018 3.982 3 H 0.139 0.861 4 O -0.303 6.303 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.171 4.171 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.074 4.074 11 C -0.182 4.182 12 C 0.291 3.709 13 O -0.464 6.464 14 N -0.334 5.334 15 C -0.024 4.024 16 C -0.163 4.163 17 C -0.163 4.163 18 C 0.060 3.940 19 H 0.061 0.939 20 N -0.334 5.334 21 C 0.036 3.964 22 C -0.397 4.397 23 H 0.078 0.922 24 C -0.244 4.244 25 N -0.580 5.580 26 Si 0.794 3.206 27 H -0.211 1.211 28 H -0.215 1.215 29 H -0.201 1.201 30 C -0.011 4.011 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.190 0.810 39 H 0.162 0.838 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.028 0.972 47 H 0.031 0.969 48 H 0.049 0.951 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.102 7.839 25.233 29.062 hybrid contribution 1.168 -0.130 -1.759 2.116 sum -10.934 7.709 23.474 27.019 Atomic orbital electron populations 1.22444 0.90875 1.03738 1.05915 1.22014 0.96830 0.96549 0.82801 0.86100 1.88096 1.87081 1.35464 1.19614 1.21635 1.02091 0.91195 0.83094 1.20287 0.93857 0.97248 0.95442 1.22379 1.02180 0.97428 0.95113 1.23256 0.91847 0.95402 0.96835 1.67681 1.04446 1.20496 1.29493 1.23104 1.00576 0.93149 0.90598 1.22339 0.96632 1.00038 0.99203 1.21308 0.79036 0.85129 0.85447 1.90699 1.42552 1.26318 1.86818 1.48189 1.54885 1.25761 1.04579 1.22363 0.94758 0.82266 1.02997 1.21928 1.00940 0.98832 0.94558 1.21942 0.99405 0.96798 0.98124 1.20715 0.95476 0.91777 0.86011 0.93855 1.44091 1.02659 1.68657 1.17955 1.20494 0.88443 0.96502 0.90978 1.19422 0.84567 1.44282 0.91388 0.92179 1.25686 1.01248 1.01673 0.95774 1.70203 1.35476 1.53494 0.98812 0.85372 0.80385 0.78342 0.76525 1.21055 1.21512 1.20122 1.21910 0.98233 0.95917 0.85086 0.88214 0.92978 0.88030 0.90504 0.88438 0.82043 0.80249 0.81047 0.83831 0.89074 0.85722 0.91833 0.87407 0.93953 0.92182 0.97247 0.96922 0.95120 0.94140 0.93155 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.10 71.98 0.65 -1.32 16 2 C 0.08 1.45 2.30 29.85 0.07 1.52 16 3 H 0.12 1.36 7.09 -2.38 -0.02 1.35 16 4 O -0.38 -8.77 9.51 -129.99 -1.24 -10.00 16 5 C 0.10 1.34 5.92 71.24 0.42 1.76 16 6 C -0.06 -1.04 5.55 -19.67 -0.11 -1.15 16 7 C -0.15 -2.25 9.82 22.36 0.22 -2.03 16 8 C 0.08 1.38 11.18 84.68 0.95 2.32 16 9 N -0.51 -10.82 10.36 -195.84 -2.03 -12.85 16 10 C 0.08 1.57 11.18 84.68 0.95 2.51 16 11 C -0.16 -3.01 9.82 22.36 0.22 -2.79 16 12 C 0.50 15.14 7.12 87.66 0.62 15.76 16 13 O -0.58 -24.89 15.92 15.98 0.25 -24.63 16 14 N -0.60 -16.55 2.97 -818.88 -2.43 -18.98 16 15 C 0.10 1.60 4.96 86.36 0.43 2.03 16 16 C -0.12 -2.47 6.08 30.67 0.19 -2.28 16 17 C -0.12 -3.96 5.14 30.62 0.16 -3.80 16 18 C 0.17 6.83 2.74 45.08 0.12 6.95 16 19 H 0.04 1.91 7.86 -2.39 -0.02 1.89 16 20 N -0.61 -31.11 2.82 -702.32 -1.98 -33.09 16 21 C 0.18 8.94 8.02 127.77 1.03 9.96 16 22 C -0.27 -15.18 9.60 84.03 0.81 -14.37 16 23 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 24 C -0.05 -2.77 5.10 84.86 0.43 -2.34 16 25 N -0.93 -55.52 10.64 21.65 0.23 -55.28 16 26 Si 0.97 46.45 29.57 68.60 2.03 48.48 16 27 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 28 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 30 C 0.11 4.18 5.78 86.37 0.50 4.68 16 31 H 0.10 0.76 5.40 -2.38 -0.01 0.75 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.55 7.87 -2.39 -0.02 0.53 16 34 H 0.08 0.87 8.05 -2.38 -0.02 0.85 16 35 H 0.10 0.70 7.83 -2.39 -0.02 0.68 16 36 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.12 1.04 4.66 -2.39 -0.01 1.03 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.90 7.71 -2.39 -0.02 1.88 16 46 H 0.01 0.49 7.41 -2.39 -0.02 0.48 16 47 H 0.01 0.67 7.21 -2.39 -0.02 0.65 16 48 H 0.03 1.28 6.36 -2.39 -0.02 1.27 16 49 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 50 H 0.05 2.25 7.01 -2.39 -0.02 2.23 16 51 H 0.07 2.42 6.50 -2.39 -0.02 2.40 16 Total: -1.00 -83.00 402.56 3.41 -79.59 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.92 Total: 9.35 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 7.65 Total: 17.42 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -6.21 Total: -120.21 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.98 Total: -34.63 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -83.00 3.41 -79.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731713737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.171 kcal (2) G-P(sol) polarization free energy of solvation -82.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds