Wall clock time and date at job start Wed Apr 1 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47084 * 2 1 4 4 O 1.42898 * 109.47027 * 119.99761 * 2 1 3 5 5 C 1.35914 * 117.00273 * 274.98420 * 4 2 1 6 6 C 1.39132 * 120.47132 * 5.12408 * 5 4 2 7 7 C 1.38542 * 118.37252 * 179.71396 * 6 5 4 8 8 C 1.38252 * 119.21695 * 0.58384 * 7 6 5 9 9 N 1.31846 * 120.89000 * 359.67446 * 8 7 6 10 10 C 1.31834 * 121.77987 * 0.03036 * 9 8 7 11 11 C 1.50699 * 109.47323 * 239.99835 * 2 1 3 12 12 O 1.21277 * 120.00218 * 244.99785 * 11 2 1 13 13 N 1.34783 * 119.99348 * 64.99996 * 11 2 1 14 14 C 1.46502 * 119.99617 * 180.02562 * 13 11 2 15 15 C 1.52999 * 109.47449 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47375 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47057 * 174.87709 * 16 15 14 18 18 H 1.09007 * 109.86679 * 305.01157 * 17 16 15 19 19 C 1.54319 * 109.88369 * 66.02687 * 17 16 15 20 20 C 1.55164 * 102.93924 * 141.61196 * 19 17 16 21 21 C 1.54911 * 101.58026 * 324.49836 * 20 19 17 22 22 N 1.47027 * 109.87945 * 184.00003 * 17 16 15 23 23 C 1.36931 * 125.64999 * 61.60306 * 22 17 16 24 24 H 1.08008 * 120.00353 * 9.04329 * 23 22 17 25 25 C 1.38811 * 120.00086 * 189.03719 * 23 22 17 26 26 N 1.31621 * 119.99781 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00135 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47335 * 60.00427 * 27 25 23 29 29 H 1.48506 * 109.46920 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47149 * 300.00139 * 27 25 23 31 31 H 1.09006 * 109.47218 * 300.00011 * 1 2 3 32 32 H 1.08994 * 109.47079 * 59.99740 * 1 2 3 33 33 H 1.08997 * 109.47207 * 180.02562 * 1 2 3 34 34 H 1.08002 * 120.81540 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.39145 * 180.25971 * 7 6 5 36 36 H 1.08006 * 119.55559 * 179.70269 * 8 7 6 37 37 H 1.08005 * 119.65750 * 179.97438 * 10 9 8 38 38 H 0.96994 * 120.00468 * 359.97438 * 13 11 2 39 39 H 1.09000 * 109.47337 * 59.99745 * 14 13 11 40 40 H 1.09000 * 109.47045 * 300.00106 * 14 13 11 41 41 H 1.08998 * 109.46605 * 300.00118 * 15 14 13 42 42 H 1.08997 * 109.46538 * 59.99547 * 15 14 13 43 43 H 1.09004 * 109.47003 * 294.87500 * 16 15 14 44 44 H 1.09003 * 109.47389 * 54.87380 * 16 15 14 45 45 H 1.08998 * 110.72166 * 259.97003 * 19 17 16 46 46 H 1.08993 * 110.72014 * 23.25174 * 19 17 16 47 47 H 1.08999 * 111.00411 * 82.57195 * 20 19 17 48 48 H 1.09002 * 111.00338 * 206.38301 * 20 19 17 49 49 H 1.09003 * 110.36491 * 155.85149 * 21 20 19 50 50 H 1.08998 * 110.36352 * 278.17030 * 21 20 19 51 51 H 0.97006 * 120.00030 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1128 0.0628 2.3042 6 6 1.6684 1.3808 2.3356 7 6 1.7925 2.0895 3.5196 8 6 2.3605 1.4727 4.6188 9 7 2.7767 0.2233 4.5541 10 6 2.6714 -0.4872 3.4485 11 6 2.0324 -0.7104 -1.2304 12 8 2.6531 -1.7466 -1.1214 13 7 1.7919 -0.1941 -2.4520 14 6 2.2798 -0.8850 -3.6482 15 6 1.8746 -0.0951 -4.8943 16 6 2.3836 -0.8170 -6.1436 17 6 1.8705 -0.0977 -7.3927 18 1 0.7841 -0.0172 -7.3539 19 6 2.4982 1.3091 -7.4834 20 6 2.7583 1.4763 -9.0039 21 6 3.1444 0.0331 -9.4138 22 7 2.2744 -0.8380 -8.5972 23 6 1.9062 -2.1200 -8.9070 24 1 1.1524 -2.6225 -8.3188 25 6 2.5016 -2.7738 -9.9769 26 7 3.4205 -2.1616 -10.6934 27 14 1.9988 -4.5223 -10.4000 28 1 0.5492 -4.5569 -10.7203 29 1 2.7771 -4.9907 -11.5749 30 1 2.2709 -5.4098 -9.2409 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.2334 1.8390 1.4596 35 1 1.4543 3.1133 3.5816 36 1 2.4644 2.0216 5.5432 37 1 3.0240 -1.5079 3.4337 38 1 1.2952 0.6345 -2.5391 39 1 1.8448 -1.8834 -3.6940 40 1 3.3661 -0.9636 -3.6047 41 1 0.7883 -0.0169 -4.9375 42 1 2.3092 0.9034 -4.8487 43 1 3.4736 -0.8154 -6.1453 44 1 2.0217 -1.8452 -6.1419 45 1 1.8006 2.0665 -7.1260 46 1 3.4336 1.3507 -6.9254 47 1 1.8555 1.8010 -9.5213 48 1 3.5807 2.1681 -9.1859 49 1 2.9491 -0.1250 -10.4745 50 1 4.1936 -0.1574 -9.1879 51 1 3.8368 -2.6186 -11.4409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731756017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:35 Heat of formation + Delta-G solvation = -20.732081 kcal Electronic energy + Delta-G solvation = -29477.931051 eV Core-core repulsion = 25378.185260 eV Total energy + Delta-G solvation = -4099.745790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30437 -40.02641 -38.42720 -37.82384 -35.61559 -33.43535 -32.72159 -32.55488 -31.91065 -30.46501 -29.40918 -28.10154 -25.59232 -24.81223 -24.30920 -23.87632 -22.99276 -21.62959 -20.61676 -20.12471 -19.18756 -18.93322 -17.94957 -17.19904 -16.76533 -16.53370 -16.30882 -15.94822 -15.54363 -15.10369 -14.88437 -14.74201 -14.39324 -14.18234 -14.09083 -13.82013 -13.72117 -13.47493 -12.96841 -12.81101 -12.66779 -12.38691 -12.08795 -12.08513 -11.91376 -11.79114 -11.69262 -11.49983 -11.07106 -10.82152 -10.75705 -10.60909 -10.31551 -10.12895 -10.05687 -10.02281 -9.99249 -9.79605 -9.60926 -9.57504 -9.28756 -8.88986 -8.58998 -6.80562 -5.70335 -3.06176 0.66705 0.76053 2.13697 2.27143 3.15976 3.34110 3.40705 3.45551 3.46178 3.98320 4.09783 4.20808 4.25430 4.29725 4.37720 4.49653 4.61512 4.73415 4.91291 4.96995 5.02955 5.10488 5.26740 5.31919 5.44308 5.47301 5.55541 5.56166 5.57113 5.57749 5.69978 5.81849 5.89284 5.91310 5.96790 6.04799 6.20193 6.28092 6.32063 6.39345 6.55139 6.67125 6.69649 6.71269 6.92142 7.13995 7.19220 7.51691 7.57999 7.60935 7.83293 7.90140 8.31516 9.21802 9.83812 10.51490 11.39728 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.001648 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.119844 B =16990.281072 C =17864.656072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 H 0.098 0.902 4 O -0.277 6.277 5 C 0.083 3.917 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.055 3.945 9 N -0.447 5.447 10 C 0.078 3.922 11 C 0.514 3.486 12 O -0.513 6.513 13 N -0.723 5.723 14 C 0.119 3.881 15 C -0.126 4.126 16 C -0.123 4.123 17 C 0.163 3.837 18 H 0.031 0.969 19 C -0.124 4.124 20 C -0.150 4.150 21 C 0.167 3.833 22 N -0.597 5.597 23 C -0.224 4.224 24 H 0.075 0.925 25 C -0.008 4.008 26 N -0.921 5.921 27 Si 0.910 3.090 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.400 0.600 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.082 0.918 50 H 0.019 0.981 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.988 13.419 25.061 29.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.005 3.995 3 H 0.116 0.884 4 O -0.188 6.188 5 C 0.035 3.965 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.102 4.102 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.298 3.702 12 O -0.387 6.387 13 N -0.376 5.376 14 C -0.004 4.004 15 C -0.165 4.165 16 C -0.163 4.163 17 C 0.055 3.945 18 H 0.048 0.952 19 C -0.162 4.162 20 C -0.189 4.189 21 C 0.042 3.958 22 N -0.321 5.321 23 C -0.353 4.353 24 H 0.093 0.907 25 C -0.204 4.204 26 N -0.568 5.568 27 Si 0.740 3.260 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.176 0.824 37 H 0.183 0.817 38 H 0.234 0.766 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.100 0.900 50 H 0.037 0.963 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.050 11.871 25.627 28.691 hybrid contribution -0.898 0.121 -1.089 1.416 sum -5.947 11.991 24.539 27.952 Atomic orbital electron populations 1.22344 0.92251 1.04873 1.03933 1.22280 0.95989 0.97010 0.84246 0.88422 1.86263 1.80688 1.36401 1.15399 1.20269 0.96665 0.91221 0.88324 1.21790 1.03698 0.94015 1.00200 1.22019 0.98832 1.01181 0.92962 1.22714 0.97224 0.91302 0.98915 1.67766 1.14815 1.07468 1.25490 1.22303 0.98585 1.01087 0.86135 1.19962 0.80474 0.85732 0.84062 1.90780 1.38932 1.22767 1.86253 1.45971 1.58065 1.27966 1.05583 1.21581 0.99862 0.96499 0.82449 1.21836 1.01393 0.99443 0.93829 1.22050 1.00947 1.00265 0.93077 1.20907 0.96066 0.90318 0.87216 0.95173 1.22594 0.99771 0.96612 0.97260 1.23013 1.00147 1.00329 0.95391 1.21600 0.92661 0.83837 0.97679 1.44630 1.57034 1.12219 1.18229 1.18943 1.16600 0.88167 1.11544 0.90714 1.24821 0.98302 0.98314 0.99000 1.69911 1.29339 1.36270 1.21282 0.86232 0.77669 0.84443 0.77623 1.21210 1.21623 1.21144 0.90697 0.89881 0.90283 0.84085 0.84351 0.82420 0.81687 0.76606 0.91084 0.91199 0.91646 0.91634 0.92172 0.91640 0.92678 0.92090 0.92474 0.92590 0.90024 0.96344 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 9.15 37.16 0.34 -0.65 16 2 C 0.07 0.52 2.64 -27.88 -0.07 0.45 16 3 H 0.10 0.52 6.33 -51.93 -0.33 0.20 16 4 O -0.28 -2.94 9.35 -39.33 -0.37 -3.31 16 5 C 0.08 0.76 6.62 -39.08 -0.26 0.50 16 6 C -0.17 -1.12 8.35 -39.14 -0.33 -1.45 16 7 C -0.13 -0.74 10.11 -39.46 -0.40 -1.14 16 8 C 0.06 0.39 11.18 -17.54 -0.20 0.19 16 9 N -0.45 -4.29 10.35 -13.12 -0.14 -4.42 16 10 C 0.08 0.74 11.14 -17.38 -0.19 0.55 16 11 C 0.51 5.86 7.18 -10.98 -0.08 5.78 16 12 O -0.51 -8.47 16.51 -14.30 -0.24 -8.71 16 13 N -0.72 -6.71 5.52 -60.29 -0.33 -7.04 16 14 C 0.12 1.41 5.67 -4.04 -0.02 1.39 16 15 C -0.13 -1.49 5.08 -26.73 -0.14 -1.63 16 16 C -0.12 -2.07 4.70 -26.73 -0.13 -2.20 16 17 C 0.16 3.12 3.17 -66.95 -0.21 2.91 16 18 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 19 C -0.12 -2.03 5.64 -24.90 -0.14 -2.17 16 20 C -0.15 -2.76 7.09 -24.58 -0.17 -2.94 16 21 C 0.17 3.99 5.57 -2.35 -0.01 3.98 16 22 N -0.60 -14.72 3.14 -162.31 -0.51 -15.23 16 23 C -0.22 -6.09 9.76 -15.06 -0.15 -6.24 16 24 H 0.08 1.97 7.83 -52.48 -0.41 1.55 16 25 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 26 N -0.92 -26.80 10.38 55.49 0.58 -26.23 16 27 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 30 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 31 H 0.07 0.34 6.97 -51.93 -0.36 -0.03 16 32 H 0.08 0.29 7.92 -51.93 -0.41 -0.12 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.14 0.58 5.61 -52.49 -0.29 0.29 16 35 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 36 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.40 2.32 8.25 -40.82 -0.34 1.98 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.69 7.60 -51.93 -0.39 0.29 16 43 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 44 H 0.06 1.23 7.87 -51.93 -0.41 0.82 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.95 7.79 -51.93 -0.40 0.54 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.08 2.20 6.53 -51.93 -0.34 1.86 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 411.14 15.07 6.20 6.20 Total: -1.00 -34.63 411.14 -10.40 -45.03 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.32 Total: -0.33 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.25 Total: -2.98 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.40 Total: -52.92 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.60 Total: -12.01 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.63 -10.40 -45.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731756017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.298 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds