Wall clock time and date at job start Wed Apr 1 2020 05:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47084 * 2 1 4 4 O 1.42898 * 109.47027 * 119.99761 * 2 1 3 5 5 C 1.35914 * 117.00273 * 274.98420 * 4 2 1 6 6 C 1.39132 * 120.47132 * 5.12408 * 5 4 2 7 7 C 1.38542 * 118.37252 * 179.71396 * 6 5 4 8 8 C 1.38252 * 119.21695 * 0.58384 * 7 6 5 9 9 N 1.31846 * 120.89000 * 359.67446 * 8 7 6 10 10 C 1.31834 * 121.77987 * 0.03036 * 9 8 7 11 11 C 1.50699 * 109.47323 * 239.99835 * 2 1 3 12 12 O 1.21277 * 120.00218 * 244.99785 * 11 2 1 13 13 N 1.34783 * 119.99348 * 64.99996 * 11 2 1 14 14 C 1.46502 * 119.99617 * 180.02562 * 13 11 2 15 15 C 1.52999 * 109.47449 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47375 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47057 * 174.87709 * 16 15 14 18 18 H 1.09007 * 109.86679 * 305.01157 * 17 16 15 19 19 C 1.54319 * 109.88369 * 66.02687 * 17 16 15 20 20 C 1.55164 * 102.93924 * 141.61196 * 19 17 16 21 21 C 1.54911 * 101.58026 * 324.49836 * 20 19 17 22 22 N 1.47027 * 109.87945 * 184.00003 * 17 16 15 23 23 C 1.36931 * 125.64999 * 61.60306 * 22 17 16 24 24 H 1.08008 * 120.00353 * 9.04329 * 23 22 17 25 25 C 1.38811 * 120.00086 * 189.03719 * 23 22 17 26 26 N 1.31621 * 119.99781 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00135 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47335 * 60.00427 * 27 25 23 29 29 H 1.48506 * 109.46920 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47149 * 300.00139 * 27 25 23 31 31 H 1.09006 * 109.47218 * 300.00011 * 1 2 3 32 32 H 1.08994 * 109.47079 * 59.99740 * 1 2 3 33 33 H 1.08997 * 109.47207 * 180.02562 * 1 2 3 34 34 H 1.08002 * 120.81540 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.39145 * 180.25971 * 7 6 5 36 36 H 1.08006 * 119.55559 * 179.70269 * 8 7 6 37 37 H 1.08005 * 119.65750 * 179.97438 * 10 9 8 38 38 H 0.96994 * 120.00468 * 359.97438 * 13 11 2 39 39 H 1.09000 * 109.47337 * 59.99745 * 14 13 11 40 40 H 1.09000 * 109.47045 * 300.00106 * 14 13 11 41 41 H 1.08998 * 109.46605 * 300.00118 * 15 14 13 42 42 H 1.08997 * 109.46538 * 59.99547 * 15 14 13 43 43 H 1.09004 * 109.47003 * 294.87500 * 16 15 14 44 44 H 1.09003 * 109.47389 * 54.87380 * 16 15 14 45 45 H 1.08998 * 110.72166 * 259.97003 * 19 17 16 46 46 H 1.08993 * 110.72014 * 23.25174 * 19 17 16 47 47 H 1.08999 * 111.00411 * 82.57195 * 20 19 17 48 48 H 1.09002 * 111.00338 * 206.38301 * 20 19 17 49 49 H 1.09003 * 110.36491 * 155.85149 * 21 20 19 50 50 H 1.08998 * 110.36352 * 278.17030 * 21 20 19 51 51 H 0.97006 * 120.00030 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1128 0.0628 2.3042 6 6 1.6684 1.3808 2.3356 7 6 1.7925 2.0895 3.5196 8 6 2.3605 1.4727 4.6188 9 7 2.7767 0.2233 4.5541 10 6 2.6714 -0.4872 3.4485 11 6 2.0324 -0.7104 -1.2304 12 8 2.6531 -1.7466 -1.1214 13 7 1.7919 -0.1941 -2.4520 14 6 2.2798 -0.8850 -3.6482 15 6 1.8746 -0.0951 -4.8943 16 6 2.3836 -0.8170 -6.1436 17 6 1.8705 -0.0977 -7.3927 18 1 0.7841 -0.0172 -7.3539 19 6 2.4982 1.3091 -7.4834 20 6 2.7583 1.4763 -9.0039 21 6 3.1444 0.0331 -9.4138 22 7 2.2744 -0.8380 -8.5972 23 6 1.9062 -2.1200 -8.9070 24 1 1.1524 -2.6225 -8.3188 25 6 2.5016 -2.7738 -9.9769 26 7 3.4205 -2.1616 -10.6934 27 14 1.9988 -4.5223 -10.4000 28 1 0.5492 -4.5569 -10.7203 29 1 2.7771 -4.9907 -11.5749 30 1 2.2709 -5.4098 -9.2409 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.2334 1.8390 1.4596 35 1 1.4543 3.1133 3.5816 36 1 2.4644 2.0216 5.5432 37 1 3.0240 -1.5079 3.4337 38 1 1.2952 0.6345 -2.5391 39 1 1.8448 -1.8834 -3.6940 40 1 3.3661 -0.9636 -3.6047 41 1 0.7883 -0.0169 -4.9375 42 1 2.3092 0.9034 -4.8487 43 1 3.4736 -0.8154 -6.1453 44 1 2.0217 -1.8452 -6.1419 45 1 1.8006 2.0665 -7.1260 46 1 3.4336 1.3507 -6.9254 47 1 1.8555 1.8010 -9.5213 48 1 3.5807 2.1681 -9.1859 49 1 2.9491 -0.1250 -10.4745 50 1 4.1936 -0.1574 -9.1879 51 1 3.8368 -2.6186 -11.4409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731756017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:34 Heat of formation + Delta-G solvation = -43.375509 kcal Electronic energy + Delta-G solvation = -29478.912943 eV Core-core repulsion = 25378.185260 eV Total energy + Delta-G solvation = -4100.727683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.93048 -40.81619 -39.49103 -39.03344 -36.72210 -34.77124 -34.02697 -33.21809 -32.87118 -31.24745 -31.01240 -29.41885 -26.72976 -26.21479 -25.35256 -24.61474 -23.72982 -22.72373 -21.84857 -21.49624 -20.68390 -19.51730 -18.80435 -18.55467 -17.74743 -17.30168 -17.08951 -16.94697 -16.74960 -16.39122 -16.04235 -15.68646 -15.56521 -15.33960 -15.00562 -14.75634 -14.53544 -14.26093 -13.97167 -13.89027 -13.66351 -13.56058 -13.34682 -13.14578 -13.11456 -13.01300 -12.72593 -12.67777 -12.62206 -12.32417 -12.23290 -12.04000 -11.82436 -11.65805 -11.47519 -11.29889 -11.15038 -10.97811 -10.72747 -10.65692 -10.57713 -10.21823 -9.48046 -8.80081 -7.81400 -5.17471 0.14178 0.23603 1.41527 1.44054 1.45501 1.47030 1.52690 2.44949 2.50867 2.79600 3.34116 3.41756 3.57439 3.61781 3.71686 3.75924 3.80769 3.91041 3.95490 4.01872 4.14678 4.17514 4.26716 4.32401 4.36484 4.44022 4.59460 4.62434 4.63432 4.77400 4.79023 4.83775 4.86222 4.99935 5.01737 5.05287 5.07526 5.13020 5.15086 5.25147 5.30213 5.37133 5.45086 5.51681 5.53561 5.71106 5.72139 5.83226 6.12950 6.29774 6.45897 6.96894 7.11694 7.13843 7.84442 8.50273 9.27408 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.001648 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.119844 B =16990.281072 C =17864.656072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.068 3.932 3 H 0.133 0.867 4 O -0.309 6.309 5 C 0.068 3.932 6 C -0.165 4.165 7 C -0.120 4.120 8 C 0.046 3.954 9 N -0.476 5.476 10 C 0.049 3.951 11 C 0.509 3.491 12 O -0.576 6.576 13 N -0.702 5.702 14 C 0.125 3.875 15 C -0.106 4.106 16 C -0.115 4.115 17 C 0.151 3.849 18 H 0.037 0.963 19 C -0.110 4.110 20 C -0.138 4.138 21 C 0.167 3.833 22 N -0.620 5.620 23 C -0.227 4.227 24 H 0.078 0.922 25 C -0.070 4.070 26 N -0.951 5.951 27 Si 0.970 3.030 28 H -0.276 1.276 29 H -0.296 1.296 30 H -0.282 1.282 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.422 0.578 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.040 0.960 44 H 0.035 0.965 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.041 0.959 50 H -0.014 1.014 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 17.367 26.852 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 H 0.150 0.850 4 O -0.221 6.221 5 C 0.020 3.980 6 C -0.191 4.191 7 C -0.139 4.139 8 C -0.111 4.111 9 N -0.185 5.185 10 C -0.109 4.109 11 C 0.295 3.705 12 O -0.455 6.455 13 N -0.356 5.356 14 C 0.001 3.999 15 C -0.144 4.144 16 C -0.155 4.155 17 C 0.045 3.955 18 H 0.055 0.945 19 C -0.148 4.148 20 C -0.176 4.176 21 C 0.042 3.958 22 N -0.345 5.345 23 C -0.357 4.357 24 H 0.096 0.904 25 C -0.262 4.262 26 N -0.601 5.601 27 Si 0.799 3.201 28 H -0.202 1.202 29 H -0.222 1.222 30 H -0.208 1.208 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.190 0.810 35 H 0.195 0.805 36 H 0.200 0.800 37 H 0.172 0.828 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.060 0.940 50 H 0.004 0.996 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.331 15.872 27.446 32.541 hybrid contribution -0.220 -1.049 -1.586 1.914 sum -7.550 14.823 25.859 30.748 Atomic orbital electron populations 1.22376 0.90103 1.04231 1.06173 1.22434 0.97366 0.97535 0.81800 0.84968 1.86221 1.81425 1.38007 1.16442 1.20325 0.97656 0.92415 0.87582 1.22159 1.02600 0.92686 1.01678 1.22439 0.97087 1.02573 0.91792 1.23282 0.96599 0.90615 1.00644 1.67735 1.16056 1.08982 1.25751 1.22263 1.00215 1.01263 0.87132 1.20709 0.79298 0.85039 0.85461 1.90757 1.41846 1.25665 1.87190 1.45699 1.57394 1.28308 1.04222 1.21299 0.98778 0.96037 0.83820 1.21629 1.02563 0.99647 0.90605 1.21849 0.99642 0.99141 0.94878 1.21227 0.96592 0.91794 0.85847 0.94520 1.22593 1.01165 0.95417 0.95628 1.22879 1.01184 0.96492 0.97056 1.21402 0.91060 0.87684 0.95648 1.44949 1.56898 1.11901 1.20732 1.19290 1.15983 0.89509 1.10880 0.90439 1.25596 0.99076 1.01946 0.99600 1.70143 1.30808 1.37353 1.21749 0.85268 0.77538 0.80303 0.76963 1.20200 1.22223 1.20818 0.88947 0.87040 0.92437 0.81025 0.80538 0.80019 0.82808 0.73932 0.93271 0.92952 0.89572 0.88778 0.94104 0.94594 0.88248 0.91022 0.91856 0.90185 0.94016 0.99592 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.15 71.98 0.66 -0.71 16 2 C 0.07 0.93 2.64 29.85 0.08 1.01 16 3 H 0.13 0.84 6.33 -2.38 -0.02 0.83 16 4 O -0.31 -6.50 9.35 -73.60 -0.69 -7.19 16 5 C 0.07 1.18 6.62 22.60 0.15 1.33 16 6 C -0.17 -1.61 8.35 22.56 0.19 -1.42 16 7 C -0.12 -0.90 10.11 22.35 0.23 -0.68 16 8 C 0.05 0.55 11.18 84.69 0.95 1.49 16 9 N -0.48 -9.11 10.35 -195.44 -2.02 -11.14 16 10 C 0.05 0.98 11.14 84.81 0.94 1.92 16 11 C 0.51 11.09 7.18 87.66 0.63 11.72 16 12 O -0.58 -19.72 16.51 15.97 0.26 -19.46 16 13 N -0.70 -11.24 5.52 -463.05 -2.55 -13.80 16 14 C 0.12 2.82 5.67 86.38 0.49 3.31 16 15 C -0.11 -2.16 5.08 30.59 0.16 -2.01 16 16 C -0.11 -3.77 4.70 30.59 0.14 -3.63 16 17 C 0.15 5.55 3.17 45.34 0.14 5.69 16 18 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 19 C -0.11 -3.17 5.64 31.78 0.18 -2.99 16 20 C -0.14 -4.76 7.09 31.99 0.23 -4.54 16 21 C 0.17 8.18 5.57 86.79 0.48 8.66 16 22 N -0.62 -30.96 3.14 -667.43 -2.09 -33.05 16 23 C -0.23 -12.63 9.76 84.03 0.82 -11.81 16 24 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 25 C -0.07 -4.00 5.48 84.86 0.47 -3.54 16 26 N -0.95 -57.86 10.38 21.65 0.22 -57.63 16 27 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 29 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 30 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 31 H 0.09 0.45 6.97 -2.38 -0.02 0.43 16 32 H 0.11 0.24 7.92 -2.39 -0.02 0.22 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.17 0.49 5.61 -2.91 -0.02 0.47 16 35 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 37 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.42 2.91 8.25 -92.71 -0.77 2.14 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.09 1.47 7.60 -2.39 -0.02 1.45 16 43 H 0.04 1.48 8.05 -2.38 -0.02 1.46 16 44 H 0.04 1.37 7.87 -2.39 -0.02 1.35 16 45 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.07 1.94 7.79 -2.39 -0.02 1.92 16 47 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.04 2.34 6.53 -2.39 -0.02 2.33 16 50 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 51 H 0.24 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -83.72 411.14 2.24 -81.48 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.16 Total: 8.35 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.93 Total: 3.83 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -6.45 Total: -115.62 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.42 Total: -26.65 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -83.72 2.24 -81.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731756017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.100 kcal (2) G-P(sol) polarization free energy of solvation -83.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds