Wall clock time and date at job start Wed Apr 1 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46921 * 2 1 4 4 C 1.52999 * 109.47323 * 120.00143 * 2 1 3 5 5 H 1.09007 * 109.46949 * 60.00053 * 4 2 1 6 6 C 1.52999 * 109.47323 * 179.97438 * 4 2 1 7 7 N 1.46497 * 109.46992 * 175.00101 * 6 4 2 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 12 12 C 1.52998 * 109.47092 * 300.27576 * 10 8 7 13 13 N 1.46499 * 109.47257 * 180.27849 * 10 8 7 14 14 C 1.34774 * 120.00436 * 205.00106 * 13 10 8 15 15 O 1.21558 * 119.99826 * 359.97438 * 14 13 10 16 16 C 1.47841 * 120.00255 * 180.02562 * 14 13 10 17 17 C 1.39573 * 120.14566 * 359.71596 * 16 14 13 18 18 C 1.37957 * 119.85407 * 179.79502 * 17 16 14 19 19 C 1.38360 * 120.14681 * 0.48751 * 18 17 16 20 20 C 1.38364 * 120.28802 * 359.74383 * 19 18 17 21 21 C 1.37958 * 120.14500 * 0.02562 * 20 19 18 22 22 N 1.46500 * 109.47230 * 300.00081 * 4 2 1 23 23 C 1.36935 * 119.99823 * 84.99836 * 22 4 2 24 24 H 1.07999 * 120.00402 * 359.97438 * 23 22 4 25 25 C 1.38819 * 120.00161 * 180.02562 * 23 22 4 26 26 N 1.31624 * 119.99387 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00358 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47023 * 59.99860 * 27 25 23 29 29 H 1.48500 * 109.47047 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47216 * 299.99961 * 27 25 23 31 31 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47090 * 299.99540 * 1 2 3 33 33 H 1.09001 * 109.47114 * 59.99460 * 1 2 3 34 34 H 1.08999 * 109.47090 * 240.00460 * 2 1 3 35 35 H 1.09008 * 109.47037 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47667 * 300.00201 * 3 2 1 37 37 H 1.09007 * 109.47198 * 60.00295 * 3 2 1 38 38 H 1.08995 * 109.46838 * 54.99989 * 6 4 2 39 39 H 1.09001 * 109.46617 * 295.00324 * 6 4 2 40 40 H 0.97000 * 120.00580 * 0.02562 * 7 6 4 41 41 H 1.09004 * 109.47239 * 60.00118 * 12 10 8 42 42 H 1.09005 * 109.47323 * 180.02562 * 12 10 8 43 43 H 1.09006 * 109.47458 * 299.99989 * 12 10 8 44 44 H 0.97002 * 120.00224 * 24.99714 * 13 10 8 45 45 H 1.08003 * 120.07246 * 0.02562 * 17 16 14 46 46 H 1.08002 * 119.92865 * 180.23299 * 18 17 16 47 47 H 1.07998 * 119.85861 * 179.72058 * 19 18 17 48 48 H 1.08003 * 119.92597 * 179.97438 * 20 19 18 49 49 H 1.08005 * 120.07246 * 179.97438 * 21 20 19 50 50 H 0.96996 * 120.00430 * 265.00115 * 22 4 2 51 51 H 0.96999 * 119.99780 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2492 6 6 3.5700 -0.7218 1.2489 7 7 4.0584 -1.3056 2.5006 8 6 5.3835 -1.4106 2.7233 9 8 6.1716 -1.0214 1.8876 10 6 5.8859 -2.0054 4.0135 11 1 5.5252 -3.0298 4.1062 12 6 5.3724 -1.1754 5.1918 13 7 7.3509 -2.0016 4.0153 14 6 8.0263 -2.8914 4.7693 15 8 7.4198 -3.6969 5.4483 16 6 9.5047 -2.8871 4.7714 17 6 10.2041 -1.9668 3.9892 18 6 11.5836 -1.9654 3.9990 19 6 12.2739 -2.8802 4.7742 20 6 11.5867 -3.7983 5.5482 21 6 10.2071 -3.8073 5.5511 22 7 1.5517 -0.0307 2.4454 23 6 0.3102 -0.3212 2.9448 24 1 -0.3092 -1.0590 2.4565 25 6 -0.1528 0.3335 4.0779 26 7 0.6019 1.2331 4.6726 27 14 -1.8467 -0.0622 4.7587 28 1 -1.9097 -1.5001 5.1242 29 1 -2.1014 0.7662 5.9646 30 1 -2.8752 0.2323 3.7290 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9563 0.8901 38 1 3.9337 0.3018 1.1591 39 1 3.9329 -1.3115 0.4070 40 1 3.4281 -1.6172 3.1689 41 1 4.2824 -1.1782 5.1906 42 1 5.7361 -1.6054 6.1251 43 1 5.7332 -0.1509 5.0992 44 1 7.8349 -1.3586 3.4737 45 1 9.6665 -1.2549 3.3804 46 1 12.1260 -1.2513 3.3971 47 1 13.3539 -2.8779 4.7749 48 1 12.1314 -4.5101 6.1508 49 1 9.6718 -4.5248 6.1554 50 1 2.1078 0.6322 2.8837 51 1 0.2786 1.6903 5.4647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732569623.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:11 Heat of formation + Delta-G solvation = -45.578469 kcal Electronic energy + Delta-G solvation = -30464.054991 eV Core-core repulsion = 26363.231780 eV Total energy + Delta-G solvation = -4100.823211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.61127 -39.57805 -38.36649 -37.37744 -35.03305 -34.05962 -32.95030 -32.14235 -31.24124 -30.45442 -29.88835 -27.89972 -26.34806 -25.03374 -24.03956 -23.31722 -22.75527 -21.95522 -20.55717 -20.13782 -19.02260 -18.44119 -17.36869 -16.74598 -16.71983 -15.98529 -15.63977 -15.43353 -15.12700 -14.88793 -14.69949 -14.48224 -14.29254 -13.96713 -13.83872 -13.60101 -13.36668 -13.21771 -13.01591 -12.93696 -12.50237 -12.30172 -12.20415 -11.97754 -11.90097 -11.55389 -11.39767 -11.36220 -11.05477 -10.93854 -10.85133 -10.58708 -10.29357 -10.18131 -10.11746 -9.96896 -9.72508 -9.50967 -9.36758 -9.31189 -9.13949 -8.95415 -8.72536 -7.06594 -5.85282 -3.14159 0.57081 1.04669 2.66029 2.72509 2.83418 3.38023 3.43706 3.44895 3.53852 3.63725 4.43397 4.50987 4.51655 4.61472 4.78104 4.85959 5.04796 5.10758 5.16751 5.17011 5.32252 5.39500 5.48193 5.48453 5.65315 5.69817 5.70965 5.78831 5.83357 5.84306 6.00116 6.04724 6.08054 6.11240 6.18423 6.24665 6.28591 6.30899 6.38404 6.52190 6.55267 6.59528 6.65110 6.76329 6.85515 7.01650 7.30990 7.36979 7.63541 7.75821 8.06109 8.31815 8.36988 9.44413 9.98133 10.34468 11.36209 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.002264 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.365184 B =12366.561981 C =13637.679496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.054 0.946 6 C 0.111 3.889 7 N -0.702 5.702 8 C 0.509 3.491 9 O -0.554 6.554 10 C 0.126 3.874 11 H 0.114 0.886 12 C -0.160 4.160 13 N -0.705 5.705 14 C 0.560 3.440 15 O -0.537 6.537 16 C -0.132 4.132 17 C -0.084 4.084 18 C -0.128 4.128 19 C -0.096 4.096 20 C -0.130 4.130 21 C -0.060 4.060 22 N -0.717 5.717 23 C -0.237 4.237 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.929 5.929 27 Si 0.902 3.098 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.031 0.969 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.413 0.587 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.408 0.592 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.137 0.863 50 H 0.385 0.615 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.118 -6.161 -2.411 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.056 3.944 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.354 5.354 8 C 0.294 3.706 9 O -0.433 6.433 10 C 0.018 3.982 11 H 0.132 0.868 12 C -0.218 4.218 13 N -0.359 5.359 14 C 0.348 3.652 15 O -0.415 6.415 16 C -0.135 4.135 17 C -0.103 4.103 18 C -0.146 4.146 19 C -0.115 4.115 20 C -0.148 4.148 21 C -0.079 4.079 22 N -0.359 5.359 23 C -0.368 4.368 24 H 0.090 0.910 25 C -0.206 4.206 26 N -0.576 5.576 27 Si 0.733 3.267 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.250 0.750 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.246 0.754 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.144 0.856 48 H 0.147 0.853 49 H 0.154 0.846 50 H 0.220 0.780 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.014 -6.502 -2.476 20.247 hybrid contribution -0.935 0.325 0.476 1.099 sum 18.079 -6.177 -2.000 19.209 Atomic orbital electron populations 1.21835 0.94974 1.00853 1.02107 1.21615 0.96833 0.96555 0.97894 1.21796 0.99616 0.96789 1.01689 1.20551 0.89203 0.96048 0.88554 0.92830 1.21806 0.95855 0.98531 0.85094 1.45918 1.06266 1.61631 1.21540 1.20439 0.83190 0.79093 0.87901 1.90650 1.55524 1.50238 1.46899 1.20805 0.80999 1.02508 0.93933 0.86826 1.22140 1.02875 0.99895 0.96907 1.45666 1.06209 1.36613 1.47411 1.18255 0.87178 0.80365 0.79417 1.90780 1.69841 1.38929 1.41991 1.19938 0.92632 0.99532 1.01387 1.21419 0.94793 0.97125 0.96933 1.21137 0.93951 0.99564 0.99936 1.21395 1.00251 0.94503 0.95314 1.21174 0.93964 0.99611 1.00068 1.21311 0.94004 0.96528 0.96057 1.42403 1.18032 1.47465 1.28005 1.19136 0.92818 1.18105 1.06762 0.91019 1.24705 0.98208 0.99170 0.98484 1.69640 1.36866 1.28908 1.22225 0.86356 0.84484 0.77508 0.78343 1.21314 1.21843 1.21343 0.94133 0.89336 0.95029 0.93287 0.93706 0.94305 0.91230 0.91142 0.91878 0.74995 0.89712 0.91071 0.91714 0.75361 0.85306 0.85302 0.85598 0.85308 0.84564 0.78047 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.26 37.16 0.31 -2.13 16 2 C -0.11 -1.75 2.80 -90.62 -0.25 -2.00 16 3 C -0.14 -2.31 8.69 37.16 0.32 -1.98 16 4 C 0.17 2.89 2.34 -67.93 -0.16 2.74 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C 0.11 1.77 5.02 -4.04 -0.02 1.75 16 7 N -0.70 -10.81 5.28 -60.30 -0.32 -11.13 16 8 C 0.51 7.79 7.22 -10.98 -0.08 7.71 16 9 O -0.55 -9.62 15.84 5.55 0.09 -9.53 16 10 C 0.13 1.71 2.99 -69.08 -0.21 1.51 16 11 H 0.11 1.56 7.58 -51.93 -0.39 1.17 16 12 C -0.16 -2.15 9.38 37.16 0.35 -1.80 16 13 N -0.71 -9.02 4.90 -55.88 -0.27 -9.29 16 14 C 0.56 7.56 7.74 -12.33 -0.10 7.47 16 15 O -0.54 -8.77 16.01 5.31 0.09 -8.69 16 16 C -0.13 -1.47 5.87 -104.97 -0.62 -2.09 16 17 C -0.08 -0.77 9.54 -39.19 -0.37 -1.15 16 18 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 19 C -0.10 -0.68 10.04 -39.49 -0.40 -1.07 16 20 C -0.13 -1.01 10.03 -39.64 -0.40 -1.41 16 21 C -0.06 -0.61 9.60 -39.19 -0.38 -0.98 16 22 N -0.72 -15.16 3.68 -53.42 -0.20 -15.35 16 23 C -0.24 -5.71 7.57 -15.06 -0.11 -5.83 16 24 H 0.07 1.71 7.39 -52.49 -0.39 1.32 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 26 N -0.93 -25.62 13.06 55.49 0.72 -24.89 16 27 Si 0.90 21.03 29.55 -169.99 -5.02 16.00 16 28 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.68 6.32 -51.92 -0.33 0.35 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.32 7.60 -51.93 -0.39 0.93 16 38 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.41 6.47 7.55 -40.82 -0.31 6.16 16 41 H 0.08 1.19 7.56 -51.93 -0.39 0.80 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.41 4.81 5.82 -40.82 -0.24 4.58 16 45 H 0.13 1.04 6.41 -52.48 -0.34 0.70 16 46 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 48 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 49 H 0.14 1.37 7.65 -52.48 -0.40 0.97 16 50 H 0.39 8.95 7.80 -40.82 -0.32 8.64 16 51 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 413.68 15.07 6.23 6.23 Total: -1.00 -29.36 413.68 -9.20 -38.56 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -7.91 Total: 19.07 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.60 Total: -0.98 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.06 Total: -60.67 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.17 Total: -18.22 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.36 -9.20 -38.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732569623.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.020 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds