Wall clock time and date at job start Wed Apr 1 2020 05:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46921 * 2 1 4 4 C 1.52999 * 109.47323 * 120.00143 * 2 1 3 5 5 H 1.09007 * 109.46949 * 60.00053 * 4 2 1 6 6 C 1.52999 * 109.47323 * 179.97438 * 4 2 1 7 7 N 1.46497 * 109.46992 * 175.00101 * 6 4 2 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 12 12 C 1.52998 * 109.47092 * 300.27576 * 10 8 7 13 13 N 1.46499 * 109.47257 * 180.27849 * 10 8 7 14 14 C 1.34774 * 120.00436 * 205.00106 * 13 10 8 15 15 O 1.21558 * 119.99826 * 359.97438 * 14 13 10 16 16 C 1.47841 * 120.00255 * 180.02562 * 14 13 10 17 17 C 1.39573 * 120.14566 * 359.71596 * 16 14 13 18 18 C 1.37957 * 119.85407 * 179.79502 * 17 16 14 19 19 C 1.38360 * 120.14681 * 0.48751 * 18 17 16 20 20 C 1.38364 * 120.28802 * 359.74383 * 19 18 17 21 21 C 1.37958 * 120.14500 * 0.02562 * 20 19 18 22 22 N 1.46500 * 109.47230 * 300.00081 * 4 2 1 23 23 C 1.36935 * 119.99823 * 84.99836 * 22 4 2 24 24 H 1.07999 * 120.00402 * 359.97438 * 23 22 4 25 25 C 1.38819 * 120.00161 * 180.02562 * 23 22 4 26 26 N 1.31624 * 119.99387 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00358 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47023 * 59.99860 * 27 25 23 29 29 H 1.48500 * 109.47047 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47216 * 299.99961 * 27 25 23 31 31 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47090 * 299.99540 * 1 2 3 33 33 H 1.09001 * 109.47114 * 59.99460 * 1 2 3 34 34 H 1.08999 * 109.47090 * 240.00460 * 2 1 3 35 35 H 1.09008 * 109.47037 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47667 * 300.00201 * 3 2 1 37 37 H 1.09007 * 109.47198 * 60.00295 * 3 2 1 38 38 H 1.08995 * 109.46838 * 54.99989 * 6 4 2 39 39 H 1.09001 * 109.46617 * 295.00324 * 6 4 2 40 40 H 0.97000 * 120.00580 * 0.02562 * 7 6 4 41 41 H 1.09004 * 109.47239 * 60.00118 * 12 10 8 42 42 H 1.09005 * 109.47323 * 180.02562 * 12 10 8 43 43 H 1.09006 * 109.47458 * 299.99989 * 12 10 8 44 44 H 0.97002 * 120.00224 * 24.99714 * 13 10 8 45 45 H 1.08003 * 120.07246 * 0.02562 * 17 16 14 46 46 H 1.08002 * 119.92865 * 180.23299 * 18 17 16 47 47 H 1.07998 * 119.85861 * 179.72058 * 19 18 17 48 48 H 1.08003 * 119.92597 * 179.97438 * 20 19 18 49 49 H 1.08005 * 120.07246 * 179.97438 * 21 20 19 50 50 H 0.96996 * 120.00430 * 265.00115 * 22 4 2 51 51 H 0.96999 * 119.99780 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2492 6 6 3.5700 -0.7218 1.2489 7 7 4.0584 -1.3056 2.5006 8 6 5.3835 -1.4106 2.7233 9 8 6.1716 -1.0214 1.8876 10 6 5.8859 -2.0054 4.0135 11 1 5.5252 -3.0298 4.1062 12 6 5.3724 -1.1754 5.1918 13 7 7.3509 -2.0016 4.0153 14 6 8.0263 -2.8914 4.7693 15 8 7.4198 -3.6969 5.4483 16 6 9.5047 -2.8871 4.7714 17 6 10.2041 -1.9668 3.9892 18 6 11.5836 -1.9654 3.9990 19 6 12.2739 -2.8802 4.7742 20 6 11.5867 -3.7983 5.5482 21 6 10.2071 -3.8073 5.5511 22 7 1.5517 -0.0307 2.4454 23 6 0.3102 -0.3212 2.9448 24 1 -0.3092 -1.0590 2.4565 25 6 -0.1528 0.3335 4.0779 26 7 0.6019 1.2331 4.6726 27 14 -1.8467 -0.0622 4.7587 28 1 -1.9097 -1.5001 5.1242 29 1 -2.1014 0.7662 5.9646 30 1 -2.8752 0.2323 3.7290 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9563 0.8901 38 1 3.9337 0.3018 1.1591 39 1 3.9329 -1.3115 0.4070 40 1 3.4281 -1.6172 3.1689 41 1 4.2824 -1.1782 5.1906 42 1 5.7361 -1.6054 6.1251 43 1 5.7332 -0.1509 5.0992 44 1 7.8349 -1.3586 3.4737 45 1 9.6665 -1.2549 3.3804 46 1 12.1260 -1.2513 3.3971 47 1 13.3539 -2.8779 4.7749 48 1 12.1314 -4.5101 6.1508 49 1 9.6718 -4.5248 6.1554 50 1 2.1078 0.6322 2.8837 51 1 0.2786 1.6903 5.4647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732569623.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:10 Heat of formation + Delta-G solvation = -63.702705 kcal Electronic energy + Delta-G solvation = -30464.840917 eV Core-core repulsion = 26363.231780 eV Total energy + Delta-G solvation = -4101.609137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67446 -40.67301 -39.26963 -38.78824 -36.18322 -35.40879 -34.71515 -33.05031 -31.95564 -31.87873 -31.05393 -29.34694 -27.72866 -26.19459 -25.51033 -24.52160 -23.55188 -23.15492 -21.56730 -21.34482 -20.29281 -19.59171 -19.10133 -17.88692 -17.72062 -17.09413 -16.73918 -16.63713 -16.35980 -16.05350 -15.80711 -15.74239 -15.48775 -15.20240 -14.94010 -14.77513 -14.67671 -14.41031 -14.31561 -13.89660 -13.78667 -13.53924 -13.36896 -13.28345 -12.87999 -12.79539 -12.72560 -12.64175 -12.58726 -12.45017 -12.12749 -12.02490 -11.94911 -11.87446 -11.36527 -11.19335 -11.16440 -11.00196 -10.77992 -10.39635 -10.03379 -9.95738 -9.91443 -8.90023 -7.83532 -5.08557 -0.16489 0.41225 1.46096 1.51834 1.53214 1.57467 1.69639 1.81189 2.37553 2.62599 2.89258 3.47213 3.52578 3.66536 3.89839 3.93052 3.95637 3.98665 4.01765 4.03827 4.24752 4.29973 4.37467 4.45558 4.46741 4.51686 4.59056 4.68651 4.72200 4.78725 4.85531 4.97452 5.00361 5.05857 5.11451 5.13769 5.18622 5.24686 5.30090 5.34296 5.35071 5.44595 5.50550 5.51733 5.61805 5.66929 5.84862 5.94696 6.35761 6.36826 6.47533 7.02182 7.09133 7.46012 8.17830 8.43048 9.38658 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.002264 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.365184 B =12366.561981 C =13637.679496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.168 3.832 5 H 0.056 0.944 6 C 0.119 3.881 7 N -0.701 5.701 8 C 0.514 3.486 9 O -0.572 6.572 10 C 0.132 3.868 11 H 0.113 0.887 12 C -0.150 4.150 13 N -0.700 5.700 14 C 0.559 3.441 15 O -0.574 6.574 16 C -0.157 4.157 17 C -0.090 4.090 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.130 4.130 21 C -0.077 4.077 22 N -0.719 5.719 23 C -0.211 4.211 24 H 0.077 0.923 25 C -0.068 4.068 26 N -0.963 5.963 27 Si 0.952 3.048 28 H -0.282 1.282 29 H -0.306 1.306 30 H -0.285 1.285 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.412 0.588 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.414 0.586 45 H 0.135 0.865 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.153 0.847 49 H 0.126 0.874 50 H 0.374 0.626 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.110 -6.820 -4.101 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.059 3.941 5 H 0.074 0.926 6 C -0.005 4.005 7 N -0.352 5.352 8 C 0.299 3.701 9 O -0.452 6.452 10 C 0.023 3.977 11 H 0.130 0.870 12 C -0.209 4.209 13 N -0.354 5.354 14 C 0.348 3.652 15 O -0.455 6.455 16 C -0.160 4.160 17 C -0.109 4.109 18 C -0.147 4.147 19 C -0.106 4.106 20 C -0.148 4.148 21 C -0.096 4.096 22 N -0.359 5.359 23 C -0.343 4.343 24 H 0.094 0.906 25 C -0.261 4.261 26 N -0.614 5.614 27 Si 0.784 3.216 28 H -0.209 1.209 29 H -0.233 1.233 30 H -0.212 1.212 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.249 0.751 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.253 0.747 45 H 0.153 0.847 46 H 0.173 0.827 47 H 0.177 0.823 48 H 0.171 0.829 49 H 0.144 0.856 50 H 0.207 0.793 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 21.007 -7.182 -4.221 22.599 hybrid contribution -1.455 0.494 0.885 1.773 sum 19.553 -6.688 -3.336 20.932 Atomic orbital electron populations 1.21754 0.95659 1.00827 1.01158 1.21580 0.96155 0.96664 0.98185 1.21716 1.00202 0.96522 1.00792 1.20698 0.90202 0.95676 0.87562 0.92608 1.21711 0.94525 0.98476 0.85755 1.45905 1.06361 1.61468 1.21465 1.20591 0.82876 0.78582 0.88038 1.90637 1.55872 1.51106 1.47606 1.20695 0.81692 1.02225 0.93066 0.86951 1.22038 1.02285 0.99782 0.96785 1.45628 1.05740 1.36647 1.47360 1.18705 0.88328 0.79576 0.78564 1.90748 1.70803 1.40384 1.43575 1.19873 0.91103 1.01486 1.03553 1.21565 0.95820 0.96788 0.96700 1.21504 0.93255 0.99984 0.99910 1.21830 1.01934 0.93148 0.93712 1.21481 0.92943 1.00164 1.00166 1.21398 0.95281 0.96545 0.96361 1.42456 1.17021 1.47337 1.29123 1.19385 0.93338 1.16168 1.05366 0.90552 1.25246 1.00765 1.00288 0.99800 1.69771 1.38115 1.30789 1.22756 0.85532 0.81877 0.77063 0.77177 1.20858 1.23296 1.21189 0.93644 0.93031 0.93208 0.90314 0.92709 0.92678 0.94588 0.91890 0.90273 0.75113 0.90447 0.91223 0.91748 0.74703 0.84705 0.82694 0.82332 0.82882 0.85640 0.79309 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 8.26 71.98 0.59 -3.90 16 2 C -0.10 -3.17 2.80 -10.80 -0.03 -3.20 16 3 C -0.13 -4.18 8.69 71.98 0.63 -3.55 16 4 C 0.17 5.57 2.34 44.99 0.11 5.67 16 5 H 0.06 1.87 8.08 -2.38 -0.02 1.85 16 6 C 0.12 3.61 5.02 86.38 0.43 4.04 16 7 N -0.70 -21.19 5.28 -463.07 -2.44 -23.64 16 8 C 0.51 15.51 7.22 87.66 0.63 16.14 16 9 O -0.57 -19.36 15.84 -3.04 -0.05 -19.41 16 10 C 0.13 3.63 2.99 44.24 0.13 3.76 16 11 H 0.11 3.16 7.58 -2.39 -0.02 3.14 16 12 C -0.15 -4.14 9.38 71.98 0.68 -3.46 16 13 N -0.70 -18.11 4.90 -448.98 -2.20 -20.31 16 14 C 0.56 15.51 7.74 86.79 0.67 16.18 16 15 O -0.57 -19.54 16.01 -3.90 -0.06 -19.61 16 16 C -0.16 -3.52 5.87 -20.09 -0.12 -3.64 16 17 C -0.09 -1.56 9.54 22.53 0.21 -1.34 16 18 C -0.13 -1.60 10.03 22.23 0.22 -1.38 16 19 C -0.09 -0.95 10.04 22.33 0.22 -0.73 16 20 C -0.13 -1.75 10.03 22.23 0.22 -1.53 16 21 C -0.08 -1.54 9.60 22.53 0.22 -1.32 16 22 N -0.72 -30.33 3.68 -322.93 -1.19 -31.52 16 23 C -0.21 -10.12 7.57 84.04 0.64 -9.49 16 24 H 0.08 3.57 7.39 -2.91 -0.02 3.55 16 25 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 26 N -0.96 -54.55 13.06 21.65 0.28 -54.27 16 27 Si 0.95 43.88 29.55 68.60 2.03 45.90 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 29 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 30 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 2.09 6.01 -2.39 -0.01 2.07 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.57 6.32 -2.38 -0.02 1.55 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.03 1.35 7.60 -2.38 -0.02 1.33 16 38 H 0.06 2.03 6.17 -2.39 -0.01 2.02 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.41 12.84 7.55 -92.71 -0.70 12.14 16 41 H 0.08 2.24 7.56 -2.38 -0.02 2.22 16 42 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.41 9.71 5.82 -92.71 -0.54 9.17 16 45 H 0.14 2.05 6.41 -2.91 -0.02 2.03 16 46 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 48 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.13 2.67 7.65 -2.91 -0.02 2.65 16 50 H 0.37 17.65 7.80 -92.71 -0.72 16.92 16 51 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -64.20 413.68 1.30 -62.91 By element: Atomic # 1 Polarization: 51.81 SS G_CDS: -1.00 Total: 50.81 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.93 Total: 9.13 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -5.55 Total: -129.73 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.11 Total: -39.02 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.20 1.30 -62.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732569623.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.797 kcal (2) G-P(sol) polarization free energy of solvation -64.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds