Wall clock time and date at job start Wed Apr 1 2020 05:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47485 * 2 1 4 4 C 1.53001 * 109.46881 * 120.00197 * 2 1 3 5 5 H 1.08999 * 109.47569 * 59.99139 * 4 2 1 6 6 C 1.53005 * 109.47048 * 299.99253 * 4 2 1 7 7 N 1.46499 * 109.47130 * 184.99917 * 6 4 2 8 8 C 1.34776 * 119.99886 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99800 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00234 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.47261 * 300.00738 * 10 8 7 12 12 C 1.53005 * 109.46781 * 60.00183 * 10 8 7 13 13 N 1.46494 * 109.47096 * 179.97438 * 10 8 7 14 14 C 1.34784 * 119.99635 * 155.00208 * 13 10 8 15 15 O 1.21543 * 119.99981 * 0.02562 * 14 13 10 16 16 C 1.47843 * 119.99605 * 179.97438 * 14 13 10 17 17 C 1.39573 * 120.14845 * 359.72505 * 16 14 13 18 18 C 1.37963 * 119.85278 * 179.79136 * 17 16 14 19 19 C 1.38360 * 120.14494 * 0.48134 * 18 17 16 20 20 C 1.38355 * 120.28977 * 359.74814 * 19 18 17 21 21 C 1.37956 * 120.14972 * 0.02562 * 20 19 18 22 22 N 1.46497 * 109.47186 * 179.97438 * 4 2 1 23 23 C 1.36937 * 119.99732 * 274.99699 * 22 4 2 24 24 H 1.07999 * 120.00071 * 359.97438 * 23 22 4 25 25 C 1.38813 * 119.99847 * 179.97438 * 23 22 4 26 26 N 1.31618 * 120.00313 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99927 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47064 * 90.00145 * 27 25 23 29 29 H 1.48500 * 109.47008 * 209.99772 * 27 25 23 30 30 H 1.48494 * 109.47098 * 329.99686 * 27 25 23 31 31 H 1.09002 * 109.46702 * 59.99574 * 1 2 3 32 32 H 1.08999 * 109.47722 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46622 * 300.00518 * 1 2 3 34 34 H 1.09000 * 109.46703 * 239.99011 * 2 1 3 35 35 H 1.09002 * 109.46747 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46766 * 299.99829 * 3 2 1 37 37 H 1.08996 * 109.47411 * 60.00277 * 3 2 1 38 38 H 1.09002 * 109.46664 * 65.00497 * 6 4 2 39 39 H 1.08990 * 109.47169 * 305.00563 * 6 4 2 40 40 H 0.97000 * 120.00321 * 0.02562 * 7 6 4 41 41 H 1.09005 * 109.46855 * 299.99909 * 12 10 8 42 42 H 1.08996 * 109.47503 * 60.00150 * 12 10 8 43 43 H 1.08997 * 109.47041 * 180.02562 * 12 10 8 44 44 H 0.96995 * 120.00292 * 335.27641 * 13 10 8 45 45 H 1.08001 * 120.07226 * 359.97438 * 17 16 14 46 46 H 1.08000 * 119.92699 * 180.23376 * 18 17 16 47 47 H 1.07992 * 119.85104 * 179.72284 * 19 18 17 48 48 H 1.08007 * 119.92325 * 179.97438 * 20 19 18 49 49 H 1.08001 * 120.07492 * 179.97438 * 21 20 19 50 50 H 0.96996 * 120.00227 * 94.99683 * 22 4 2 51 51 H 0.96998 * 120.00441 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6765 -1.7489 1.2493 6 6 1.5301 0.0001 2.4985 7 7 2.1141 -0.6176 3.6917 8 6 1.8053 -0.1444 4.9152 9 8 1.0435 0.7925 5.0285 10 6 2.4065 -0.7793 6.1426 11 1 2.1189 -1.8298 6.1862 12 6 3.9313 -0.6703 6.0782 13 7 1.9182 -0.0887 7.3387 14 6 1.8850 -0.7326 8.5223 15 8 2.2607 -1.8861 8.5973 16 6 1.3927 -0.0354 9.7295 17 6 0.9669 1.2913 9.6481 18 6 0.5046 1.9347 10.7776 19 6 0.4718 1.2708 11.9910 20 6 0.8969 -0.0429 12.0795 21 6 1.3571 -0.6993 10.9568 22 7 3.5049 -0.7219 1.2490 23 6 4.1891 -1.6937 0.5688 24 1 3.6487 -2.4600 0.0329 25 6 5.5772 -1.6940 0.5681 26 7 6.2359 -0.7605 1.2216 27 14 6.5105 -3.0193 -0.3603 28 1 6.7574 -2.5674 -1.7531 29 1 7.8084 -3.2756 0.3143 30 1 5.7078 -4.2684 -0.3801 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8900 34 1 1.8933 -0.5140 -0.8899 35 1 3.1301 1.4423 -0.0005 36 1 1.6768 1.9562 -0.8900 37 1 1.6769 1.9563 0.8900 38 1 0.4437 -0.0768 2.5444 39 1 1.8184 1.0502 2.4548 40 1 2.7231 -1.3671 3.6011 41 1 4.2950 -1.1839 5.1881 42 1 4.2190 0.3801 6.0346 43 1 4.3662 -1.1299 6.9657 44 1 1.6149 0.8307 7.2780 45 1 0.9965 1.8122 8.7024 46 1 0.1713 2.9601 10.7152 47 1 0.1132 1.7804 12.8730 48 1 0.8691 -0.5553 13.0298 49 1 1.6891 -1.7246 11.0272 50 1 3.9903 -0.0339 1.7306 51 1 7.2058 -0.7604 1.2209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732569624.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:15 Heat of formation + Delta-G solvation = -46.884934 kcal Electronic energy + Delta-G solvation = -30434.789227 eV Core-core repulsion = 26333.909364 eV Total energy + Delta-G solvation = -4100.879863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61236 -39.58767 -38.37597 -37.39776 -35.02389 -33.95775 -33.28214 -32.12270 -31.24020 -30.53260 -29.97485 -27.38888 -26.66014 -25.01921 -24.11350 -23.26394 -22.74240 -22.33497 -20.58440 -20.13390 -19.02551 -18.30983 -17.41319 -16.77066 -16.66805 -16.01026 -15.74223 -15.43077 -15.15592 -14.93961 -14.71599 -14.46505 -14.15539 -13.91833 -13.75276 -13.56689 -13.46628 -13.24611 -13.07890 -12.97117 -12.74324 -12.35840 -12.22060 -12.08024 -11.97444 -11.59249 -11.46934 -11.39720 -11.18813 -11.01979 -10.91093 -10.65937 -10.39836 -10.22724 -10.11547 -9.85701 -9.71800 -9.69848 -9.36927 -9.31122 -9.13926 -8.97771 -8.71073 -7.07592 -5.86243 -3.16208 0.57170 1.04718 2.66081 2.73076 2.83474 3.37680 3.43964 3.45211 3.54301 3.63815 4.43501 4.50625 4.51538 4.61533 4.78221 4.86035 5.04867 5.10878 5.16830 5.17062 5.29949 5.34024 5.46425 5.48305 5.59351 5.65374 5.69130 5.71062 5.78525 5.83824 5.92878 6.00189 6.05374 6.08097 6.11299 6.12775 6.24787 6.28488 6.29956 6.33785 6.40300 6.55276 6.56448 6.69141 6.79625 6.98015 7.01080 7.37183 7.62606 7.76117 8.06254 8.30930 8.37155 9.43614 9.97104 10.33065 11.35318 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002339 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.480377 B =11965.894101 C =13450.154308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.169 3.831 5 H 0.054 0.946 6 C 0.110 3.890 7 N -0.703 5.703 8 C 0.509 3.491 9 O -0.554 6.554 10 C 0.126 3.874 11 H 0.114 0.886 12 C -0.160 4.160 13 N -0.705 5.705 14 C 0.560 3.440 15 O -0.537 6.537 16 C -0.132 4.132 17 C -0.084 4.084 18 C -0.128 4.128 19 C -0.096 4.096 20 C -0.130 4.130 21 C -0.060 4.060 22 N -0.719 5.719 23 C -0.243 4.243 24 H 0.071 0.929 25 C -0.008 4.008 26 N -0.929 5.929 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.413 0.587 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.408 0.592 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.137 0.863 50 H 0.385 0.615 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.952 4.706 16.410 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.014 4.014 7 N -0.354 5.354 8 C 0.294 3.706 9 O -0.433 6.433 10 C 0.017 3.983 11 H 0.132 0.868 12 C -0.218 4.218 13 N -0.359 5.359 14 C 0.348 3.652 15 O -0.415 6.415 16 C -0.135 4.135 17 C -0.103 4.103 18 C -0.146 4.146 19 C -0.115 4.115 20 C -0.148 4.148 21 C -0.079 4.079 22 N -0.361 5.361 23 C -0.374 4.374 24 H 0.088 0.912 25 C -0.205 4.205 26 N -0.576 5.576 27 Si 0.735 3.265 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.250 0.750 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.246 0.754 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.144 0.856 48 H 0.147 0.853 49 H 0.154 0.846 50 H 0.220 0.780 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.130 4.382 16.400 20.864 hybrid contribution 0.908 -0.285 -0.656 1.156 sum -11.222 4.098 15.744 19.763 Atomic orbital electron populations 1.21929 0.96757 1.00985 1.01007 1.21721 0.93571 0.97171 1.00815 1.21768 1.02626 0.95605 0.99779 1.20519 0.86460 0.96707 0.90444 0.92827 1.21865 0.97294 0.98008 0.84204 1.45935 1.48077 1.36378 1.05020 1.20437 0.81414 0.83760 0.85020 1.90648 1.36935 1.28971 1.86755 1.20806 0.95665 0.98468 0.83316 0.86816 1.22140 0.92111 1.03446 1.04141 1.45669 1.65653 1.17527 1.07058 1.18253 0.77883 0.86053 0.83021 1.90776 1.48168 1.16944 1.85637 1.19941 1.04450 0.94981 0.94117 1.21420 0.96181 0.93477 0.99190 1.21138 1.00449 1.00440 0.92560 1.21391 0.97505 0.94724 0.97844 1.21171 0.99947 0.95085 0.98613 1.21312 0.95320 1.00331 0.90937 1.42438 0.98656 1.33476 1.61497 1.19196 0.88903 1.04580 1.24689 0.91152 1.24716 0.96424 0.98633 1.00689 1.69648 1.06938 1.34871 1.46173 0.86242 0.79525 0.81323 0.79367 1.21807 1.21828 1.20778 0.93508 0.93208 0.92975 0.90896 0.91326 0.94255 0.93604 0.91544 0.91205 0.75031 0.89731 0.91703 0.91057 0.75356 0.85309 0.85302 0.85599 0.85310 0.84564 0.78033 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.84 37.16 0.33 -1.67 16 2 C -0.11 -1.81 2.91 -90.62 -0.26 -2.07 16 3 C -0.14 -2.29 8.69 37.15 0.32 -1.97 16 4 C 0.17 2.97 2.27 -67.93 -0.15 2.82 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.76 4.51 -4.04 -0.02 1.75 16 7 N -0.70 -10.94 5.28 -60.29 -0.32 -11.26 16 8 C 0.51 7.83 7.22 -10.99 -0.08 7.75 16 9 O -0.55 -9.63 15.83 5.56 0.09 -9.54 16 10 C 0.13 1.72 2.99 -69.08 -0.21 1.51 16 11 H 0.11 1.57 7.58 -51.93 -0.39 1.18 16 12 C -0.16 -2.16 9.38 37.16 0.35 -1.81 16 13 N -0.71 -9.04 4.91 -55.88 -0.27 -9.31 16 14 C 0.56 7.57 7.74 -12.33 -0.10 7.48 16 15 O -0.54 -8.77 16.01 5.33 0.09 -8.69 16 16 C -0.13 -1.47 5.87 -104.97 -0.62 -2.09 16 17 C -0.08 -0.77 9.54 -39.18 -0.37 -1.15 16 18 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 19 C -0.10 -0.68 10.04 -39.49 -0.40 -1.07 16 20 C -0.13 -1.01 10.03 -39.64 -0.40 -1.41 16 21 C -0.06 -0.61 9.60 -39.18 -0.38 -0.98 16 22 N -0.72 -15.67 3.80 -53.42 -0.20 -15.87 16 23 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 27 Si 0.90 21.28 29.55 -169.99 -5.02 16.25 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.67 6.54 -51.93 -0.34 0.33 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.32 7.61 -51.93 -0.39 0.92 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.70 6.32 -51.93 -0.33 0.37 16 38 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 39 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 40 H 0.41 6.55 7.56 -40.82 -0.31 6.24 16 41 H 0.08 1.20 7.57 -51.93 -0.39 0.80 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.41 4.82 5.82 -40.82 -0.24 4.58 16 45 H 0.13 1.04 6.41 -52.49 -0.34 0.70 16 46 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 48 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 49 H 0.14 1.37 7.65 -52.49 -0.40 0.97 16 50 H 0.39 9.15 7.80 -40.82 -0.32 8.83 16 51 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 415.82 15.07 6.27 6.27 Total: -1.00 -30.14 415.82 -9.17 -39.31 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -7.89 Total: 18.94 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.62 Total: -0.81 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.07 Total: -61.73 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.17 Total: -18.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.14 -9.17 -39.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732569624.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.577 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds