Wall clock time and date at job start Wed Apr 1 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47485 * 2 1 4 4 C 1.53001 * 109.46881 * 120.00197 * 2 1 3 5 5 H 1.08999 * 109.47569 * 59.99139 * 4 2 1 6 6 C 1.53005 * 109.47048 * 299.99253 * 4 2 1 7 7 N 1.46499 * 109.47130 * 184.99917 * 6 4 2 8 8 C 1.34776 * 119.99886 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99800 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00234 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.47261 * 300.00738 * 10 8 7 12 12 C 1.53005 * 109.46781 * 60.00183 * 10 8 7 13 13 N 1.46494 * 109.47096 * 179.97438 * 10 8 7 14 14 C 1.34784 * 119.99635 * 155.00208 * 13 10 8 15 15 O 1.21543 * 119.99981 * 0.02562 * 14 13 10 16 16 C 1.47843 * 119.99605 * 179.97438 * 14 13 10 17 17 C 1.39573 * 120.14845 * 359.72505 * 16 14 13 18 18 C 1.37963 * 119.85278 * 179.79136 * 17 16 14 19 19 C 1.38360 * 120.14494 * 0.48134 * 18 17 16 20 20 C 1.38355 * 120.28977 * 359.74814 * 19 18 17 21 21 C 1.37956 * 120.14972 * 0.02562 * 20 19 18 22 22 N 1.46497 * 109.47186 * 179.97438 * 4 2 1 23 23 C 1.36937 * 119.99732 * 274.99699 * 22 4 2 24 24 H 1.07999 * 120.00071 * 359.97438 * 23 22 4 25 25 C 1.38813 * 119.99847 * 179.97438 * 23 22 4 26 26 N 1.31618 * 120.00313 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99927 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47064 * 90.00145 * 27 25 23 29 29 H 1.48500 * 109.47008 * 209.99772 * 27 25 23 30 30 H 1.48494 * 109.47098 * 329.99686 * 27 25 23 31 31 H 1.09002 * 109.46702 * 59.99574 * 1 2 3 32 32 H 1.08999 * 109.47722 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46622 * 300.00518 * 1 2 3 34 34 H 1.09000 * 109.46703 * 239.99011 * 2 1 3 35 35 H 1.09002 * 109.46747 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46766 * 299.99829 * 3 2 1 37 37 H 1.08996 * 109.47411 * 60.00277 * 3 2 1 38 38 H 1.09002 * 109.46664 * 65.00497 * 6 4 2 39 39 H 1.08990 * 109.47169 * 305.00563 * 6 4 2 40 40 H 0.97000 * 120.00321 * 0.02562 * 7 6 4 41 41 H 1.09005 * 109.46855 * 299.99909 * 12 10 8 42 42 H 1.08996 * 109.47503 * 60.00150 * 12 10 8 43 43 H 1.08997 * 109.47041 * 180.02562 * 12 10 8 44 44 H 0.96995 * 120.00292 * 335.27641 * 13 10 8 45 45 H 1.08001 * 120.07226 * 359.97438 * 17 16 14 46 46 H 1.08000 * 119.92699 * 180.23376 * 18 17 16 47 47 H 1.07992 * 119.85104 * 179.72284 * 19 18 17 48 48 H 1.08007 * 119.92325 * 179.97438 * 20 19 18 49 49 H 1.08001 * 120.07492 * 179.97438 * 21 20 19 50 50 H 0.96996 * 120.00227 * 94.99683 * 22 4 2 51 51 H 0.96998 * 120.00441 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6765 -1.7489 1.2493 6 6 1.5301 0.0001 2.4985 7 7 2.1141 -0.6176 3.6917 8 6 1.8053 -0.1444 4.9152 9 8 1.0435 0.7925 5.0285 10 6 2.4065 -0.7793 6.1426 11 1 2.1189 -1.8298 6.1862 12 6 3.9313 -0.6703 6.0782 13 7 1.9182 -0.0887 7.3387 14 6 1.8850 -0.7326 8.5223 15 8 2.2607 -1.8861 8.5973 16 6 1.3927 -0.0354 9.7295 17 6 0.9669 1.2913 9.6481 18 6 0.5046 1.9347 10.7776 19 6 0.4718 1.2708 11.9910 20 6 0.8969 -0.0429 12.0795 21 6 1.3571 -0.6993 10.9568 22 7 3.5049 -0.7219 1.2490 23 6 4.1891 -1.6937 0.5688 24 1 3.6487 -2.4600 0.0329 25 6 5.5772 -1.6940 0.5681 26 7 6.2359 -0.7605 1.2216 27 14 6.5105 -3.0193 -0.3603 28 1 6.7574 -2.5674 -1.7531 29 1 7.8084 -3.2756 0.3143 30 1 5.7078 -4.2684 -0.3801 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8900 34 1 1.8933 -0.5140 -0.8899 35 1 3.1301 1.4423 -0.0005 36 1 1.6768 1.9562 -0.8900 37 1 1.6769 1.9563 0.8900 38 1 0.4437 -0.0768 2.5444 39 1 1.8184 1.0502 2.4548 40 1 2.7231 -1.3671 3.6011 41 1 4.2950 -1.1839 5.1881 42 1 4.2190 0.3801 6.0346 43 1 4.3662 -1.1299 6.9657 44 1 1.6149 0.8307 7.2780 45 1 0.9965 1.8122 8.7024 46 1 0.1713 2.9601 10.7152 47 1 0.1132 1.7804 12.8730 48 1 0.8691 -0.5553 13.0298 49 1 1.6891 -1.7246 11.0272 50 1 3.9903 -0.0339 1.7306 51 1 7.2058 -0.7604 1.2209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732569624.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:14 Heat of formation + Delta-G solvation = -65.612614 kcal Electronic energy + Delta-G solvation = -30435.601321 eV Core-core repulsion = 26333.909364 eV Total energy + Delta-G solvation = -4101.691956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.68262 -40.69146 -39.28084 -38.78379 -36.17907 -35.30304 -35.04534 -33.02972 -32.17771 -31.88757 -31.03474 -28.84673 -27.90728 -26.22375 -25.54820 -24.46546 -23.79100 -23.32883 -21.58263 -21.33805 -20.24869 -19.45390 -19.19814 -17.94070 -17.69378 -17.16371 -16.82634 -16.70798 -16.36750 -15.98013 -15.95933 -15.53720 -15.42164 -15.10911 -14.97291 -14.87604 -14.70033 -14.38602 -14.28549 -14.10974 -13.72368 -13.64037 -13.48949 -13.34906 -12.87969 -12.78370 -12.75858 -12.64626 -12.58623 -12.49700 -12.16990 -12.09810 -12.02475 -11.85384 -11.49750 -11.20931 -11.18759 -11.02083 -10.82408 -10.40081 -10.03669 -9.95683 -9.91452 -8.94841 -7.88657 -5.15686 -0.16457 0.41270 1.45357 1.49780 1.51651 1.58134 1.69136 1.81145 2.36956 2.59348 2.89283 3.43689 3.50458 3.65901 3.89263 3.89972 3.93439 3.97364 4.01713 4.03461 4.24286 4.24787 4.35566 4.46706 4.46924 4.51640 4.54591 4.58865 4.69276 4.75078 4.85543 4.89317 4.95628 5.05904 5.10826 5.11494 5.15809 5.18704 5.25909 5.30735 5.34794 5.44325 5.45958 5.50618 5.57698 5.62871 5.68792 5.94744 6.32180 6.35694 6.46353 7.01964 7.07994 7.40813 8.12956 8.37907 9.33466 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013233 B = 0.002339 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.480377 B =11965.894101 C =13450.154308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.170 3.830 5 H 0.055 0.945 6 C 0.120 3.880 7 N -0.703 5.703 8 C 0.514 3.486 9 O -0.571 6.571 10 C 0.132 3.868 11 H 0.113 0.887 12 C -0.151 4.151 13 N -0.700 5.700 14 C 0.559 3.441 15 O -0.574 6.574 16 C -0.157 4.157 17 C -0.090 4.090 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.130 4.130 21 C -0.077 4.077 22 N -0.723 5.723 23 C -0.228 4.228 24 H 0.075 0.925 25 C -0.066 4.066 26 N -0.962 5.962 27 Si 0.959 3.041 28 H -0.295 1.295 29 H -0.301 1.301 30 H -0.271 1.271 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.411 0.589 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.414 0.586 45 H 0.135 0.865 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.153 0.847 49 H 0.126 0.874 50 H 0.375 0.625 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 5.544 17.479 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.061 3.939 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.353 5.353 8 C 0.299 3.701 9 O -0.451 6.451 10 C 0.023 3.977 11 H 0.131 0.869 12 C -0.209 4.209 13 N -0.354 5.354 14 C 0.348 3.652 15 O -0.455 6.455 16 C -0.160 4.160 17 C -0.109 4.109 18 C -0.146 4.146 19 C -0.106 4.106 20 C -0.148 4.148 21 C -0.096 4.096 22 N -0.363 5.363 23 C -0.360 4.360 24 H 0.092 0.908 25 C -0.259 4.259 26 N -0.612 5.612 27 Si 0.790 3.210 28 H -0.223 1.223 29 H -0.229 1.229 30 H -0.196 1.196 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.253 0.747 45 H 0.153 0.847 46 H 0.173 0.827 47 H 0.177 0.823 48 H 0.171 0.829 49 H 0.144 0.856 50 H 0.207 0.793 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.382 5.222 17.451 23.209 hybrid contribution 1.476 -0.492 -0.940 1.818 sum -12.907 4.730 16.511 21.484 Atomic orbital electron populations 1.21846 0.93846 1.01975 1.02184 1.21608 0.95939 0.96525 0.98799 1.21693 1.00280 0.96028 1.01141 1.20674 0.84019 0.97265 0.91981 0.92722 1.21753 0.98023 0.97183 0.83461 1.45928 1.48000 1.36268 1.05131 1.20596 0.80951 0.83341 0.85198 1.90635 1.37761 1.29736 1.86992 1.20692 0.95543 0.98369 0.83071 0.86918 1.22040 0.91992 1.03243 1.03657 1.45629 1.65408 1.17674 1.06667 1.18705 0.77073 0.85701 0.83683 1.90743 1.50004 1.18539 1.86195 1.19874 1.06695 0.96069 0.93378 1.21566 0.96210 0.92720 1.00375 1.21505 0.99465 1.01591 0.92089 1.21826 0.95746 0.94265 0.98784 1.21478 0.98950 0.95630 0.98695 1.21398 0.96328 1.00256 0.91597 1.42497 1.00412 1.32462 1.60960 1.19491 0.89054 1.04404 1.23065 0.90757 1.25323 0.97476 1.00649 1.02444 1.69782 1.06404 1.36731 1.48332 0.85355 0.78076 0.79802 0.77776 1.22306 1.22852 1.19629 0.92064 0.92355 0.92079 0.92928 0.94805 0.92539 0.92600 0.89910 0.92017 0.75182 0.90517 0.91721 0.91158 0.74691 0.84704 0.82693 0.82334 0.82883 0.85638 0.79281 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.84 71.98 0.64 -2.74 16 2 C -0.11 -3.36 2.91 -10.79 -0.03 -3.39 16 3 C -0.13 -4.26 8.69 71.98 0.63 -3.63 16 4 C 0.17 5.82 2.27 44.99 0.10 5.92 16 5 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 6 C 0.12 3.70 4.51 86.38 0.39 4.09 16 7 N -0.70 -21.65 5.28 -463.06 -2.45 -24.09 16 8 C 0.51 15.65 7.22 87.66 0.63 16.28 16 9 O -0.57 -19.39 15.83 -3.03 -0.05 -19.44 16 10 C 0.13 3.65 2.99 44.25 0.13 3.79 16 11 H 0.11 3.19 7.58 -2.39 -0.02 3.17 16 12 C -0.15 -4.18 9.38 71.98 0.68 -3.50 16 13 N -0.70 -18.14 4.91 -448.99 -2.20 -20.35 16 14 C 0.56 15.52 7.74 86.78 0.67 16.20 16 15 O -0.57 -19.54 16.01 -3.85 -0.06 -19.60 16 16 C -0.16 -3.52 5.87 -20.09 -0.12 -3.64 16 17 C -0.09 -1.55 9.54 22.53 0.21 -1.34 16 18 C -0.13 -1.60 10.03 22.23 0.22 -1.38 16 19 C -0.09 -0.95 10.04 22.33 0.22 -0.73 16 20 C -0.13 -1.75 10.03 22.23 0.22 -1.53 16 21 C -0.08 -1.53 9.60 22.53 0.22 -1.32 16 22 N -0.72 -31.72 3.80 -322.94 -1.23 -32.95 16 23 C -0.23 -11.42 9.93 84.03 0.83 -10.59 16 24 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 25 C -0.07 -3.53 5.50 84.86 0.47 -3.07 16 26 N -0.96 -55.15 13.06 21.65 0.28 -54.87 16 27 Si 0.96 44.27 29.55 68.60 2.03 46.29 16 28 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 29 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 30 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.37 6.54 -2.38 -0.02 1.36 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.03 1.29 7.61 -2.39 -0.02 1.28 16 36 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.06 1.64 6.32 -2.39 -0.02 1.63 16 38 H 0.08 2.33 6.71 -2.39 -0.02 2.31 16 39 H 0.06 2.04 6.17 -2.39 -0.01 2.02 16 40 H 0.41 13.11 7.56 -92.71 -0.70 12.41 16 41 H 0.08 2.24 7.57 -2.38 -0.02 2.22 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.41 9.73 5.82 -92.71 -0.54 9.19 16 45 H 0.14 2.04 6.41 -2.91 -0.02 2.03 16 46 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 48 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.13 2.67 7.65 -2.91 -0.02 2.65 16 50 H 0.37 18.15 7.80 -92.71 -0.72 17.42 16 51 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -65.65 415.82 1.45 -64.21 By element: Atomic # 1 Polarization: 52.35 SS G_CDS: -1.00 Total: 51.35 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 6.12 Total: 9.43 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -5.59 Total: -132.25 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.11 Total: -39.04 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.65 1.45 -64.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732569624.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.404 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds