Wall clock time and date at job start Wed Apr 1 2020 05:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46990 * 2 1 4 4 C 1.52999 * 109.46780 * 119.99433 * 2 1 3 5 5 H 1.08996 * 109.47177 * 60.00733 * 4 2 1 6 6 C 1.53005 * 109.47060 * 180.02562 * 4 2 1 7 7 N 1.46499 * 109.47130 * 174.99810 * 6 4 2 8 8 C 1.34776 * 119.99886 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99800 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00234 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.47261 * 300.00738 * 10 8 7 12 12 C 1.53005 * 109.46781 * 60.00183 * 10 8 7 13 13 N 1.46494 * 109.47096 * 179.97438 * 10 8 7 14 14 C 1.34784 * 119.99635 * 155.00208 * 13 10 8 15 15 O 1.21543 * 119.99981 * 0.02562 * 14 13 10 16 16 C 1.47843 * 119.99605 * 179.97438 * 14 13 10 17 17 C 1.39573 * 120.14845 * 359.72505 * 16 14 13 18 18 C 1.37963 * 119.85278 * 179.79136 * 17 16 14 19 19 C 1.38360 * 120.14494 * 0.48134 * 18 17 16 20 20 C 1.38355 * 120.28977 * 359.74814 * 19 18 17 21 21 C 1.37956 * 120.14972 * 0.02562 * 20 19 18 22 22 N 1.46503 * 109.47441 * 300.00219 * 4 2 1 23 23 C 1.36934 * 119.99709 * 85.00100 * 22 4 2 24 24 H 1.08002 * 120.00558 * 0.02562 * 23 22 4 25 25 C 1.38809 * 119.99882 * 180.02562 * 23 22 4 26 26 N 1.31625 * 120.00025 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00204 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47224 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47314 * 119.99742 * 27 25 23 30 30 H 1.48500 * 109.47158 * 239.99977 * 27 25 23 31 31 H 1.09010 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47448 * 300.00236 * 1 2 3 33 33 H 1.08998 * 109.47226 * 60.00547 * 1 2 3 34 34 H 1.08996 * 109.47448 * 239.99764 * 2 1 3 35 35 H 1.08991 * 109.47431 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47128 * 299.99947 * 3 2 1 37 37 H 1.09000 * 109.47653 * 59.99462 * 3 2 1 38 38 H 1.09002 * 109.46664 * 55.00391 * 6 4 2 39 39 H 1.08990 * 109.47169 * 295.00457 * 6 4 2 40 40 H 0.97000 * 120.00321 * 0.02562 * 7 6 4 41 41 H 1.09005 * 109.46855 * 299.99909 * 12 10 8 42 42 H 1.08996 * 109.47503 * 60.00150 * 12 10 8 43 43 H 1.08997 * 109.47041 * 180.02562 * 12 10 8 44 44 H 0.96995 * 120.00292 * 335.27641 * 13 10 8 45 45 H 1.08001 * 120.07226 * 359.97438 * 17 16 14 46 46 H 1.08000 * 119.92699 * 180.23376 * 18 17 16 47 47 H 1.07992 * 119.85104 * 179.72284 * 19 18 17 48 48 H 1.08007 * 119.92325 * 179.97438 * 20 19 18 49 49 H 1.08001 * 120.07492 * 179.97438 * 21 20 19 50 50 H 0.96992 * 119.99739 * 265.00209 * 22 4 2 51 51 H 0.97001 * 119.99861 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6767 -1.7488 1.2494 6 6 3.5700 -0.7206 1.2497 7 7 4.0582 -1.3042 2.5016 8 6 5.3832 -1.4073 2.7254 9 8 6.1714 -1.0166 1.8905 10 6 5.8855 -2.0082 4.0129 11 1 5.5213 -1.4196 4.8549 12 6 5.3766 -3.4457 4.1374 13 7 7.3505 -2.0075 4.0132 14 6 8.0241 -2.0078 5.1807 15 8 7.4160 -2.0091 6.2331 16 6 9.5025 -2.0077 5.1810 17 6 10.2038 -2.0131 3.9743 18 6 11.5834 -2.0087 3.9817 19 6 12.2718 -2.0089 5.1818 20 6 11.5827 -2.0083 6.3816 21 6 10.2031 -2.0081 6.3882 22 7 1.5515 -0.0305 2.4455 23 6 0.3100 -0.3209 2.9448 24 1 -0.3091 -1.0594 2.4571 25 6 -0.1530 0.3338 4.0778 26 7 0.6016 1.2335 4.6725 27 14 -1.8464 -0.0628 4.7594 28 1 -2.4890 -1.1018 3.9150 29 1 -1.7147 -0.5664 6.1501 30 1 -2.6820 1.1648 4.7545 31 1 -0.3634 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 3.9329 0.3033 1.1604 39 1 3.9337 -1.3098 0.4080 40 1 3.4278 -1.6164 3.1695 41 1 4.2866 -3.4466 4.1370 42 1 5.7408 -4.0344 3.2955 43 1 5.7395 -3.8802 5.0689 44 1 7.8357 -2.0029 3.1734 45 1 9.6676 -2.0178 3.0368 46 1 12.1272 -2.0090 3.0486 47 1 13.3517 -2.0099 5.1821 48 1 12.1260 -2.0089 7.3150 49 1 9.6664 -2.0081 7.3255 50 1 2.1076 0.6325 2.8837 51 1 0.2782 1.6908 5.4645 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732569625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:19 Heat of formation + Delta-G solvation = -45.321293 kcal Electronic energy + Delta-G solvation = -30439.234434 eV Core-core repulsion = 26338.422375 eV Total energy + Delta-G solvation = -4100.812059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60825 -39.57736 -38.35947 -37.37583 -35.04259 -34.06197 -32.94223 -32.15365 -31.23291 -30.46304 -29.90404 -27.91480 -26.34886 -25.08045 -24.03765 -23.31189 -22.74788 -21.96559 -20.55479 -20.13935 -19.02513 -18.43638 -17.35677 -16.76720 -16.70301 -15.98297 -15.62597 -15.48362 -15.03444 -14.89664 -14.72261 -14.59758 -14.24969 -13.95068 -13.74315 -13.59454 -13.45287 -13.25309 -13.00032 -12.95564 -12.55993 -12.37280 -12.24747 -11.97074 -11.92035 -11.61803 -11.39399 -11.35594 -11.05934 -10.95609 -10.83319 -10.58576 -10.29454 -10.12836 -10.10377 -9.95524 -9.73068 -9.50870 -9.36353 -9.30406 -9.14543 -8.95332 -8.72555 -7.05571 -5.84121 -3.13381 0.58065 1.05444 2.65728 2.75341 2.82270 3.38069 3.44461 3.46986 3.53718 3.63881 4.43849 4.51593 4.52209 4.62041 4.77436 4.85581 5.02378 5.05786 5.15917 5.18008 5.32265 5.40076 5.48248 5.48751 5.56636 5.65984 5.70301 5.73366 5.78809 5.84525 6.00593 6.04086 6.07484 6.08879 6.12106 6.18527 6.24627 6.30945 6.38339 6.52233 6.56089 6.59922 6.65246 6.76669 6.85631 7.02249 7.31203 7.37326 7.65042 7.75859 8.07538 8.32619 8.36978 9.45278 9.99235 10.35143 11.37490 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.002306 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.120292 B =12138.555610 C =13448.350483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.054 0.946 6 C 0.111 3.889 7 N -0.702 5.702 8 C 0.510 3.490 9 O -0.554 6.554 10 C 0.124 3.876 11 H 0.119 0.881 12 C -0.158 4.158 13 N -0.706 5.706 14 C 0.560 3.440 15 O -0.534 6.534 16 C -0.131 4.131 17 C -0.084 4.084 18 C -0.128 4.128 19 C -0.097 4.097 20 C -0.130 4.130 21 C -0.060 4.060 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.073 0.927 25 C -0.010 4.010 26 N -0.927 5.927 27 Si 0.901 3.099 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.031 0.969 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.413 0.587 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.408 0.592 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.137 0.863 50 H 0.385 0.615 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.158 -8.427 -3.420 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.353 5.353 8 C 0.294 3.706 9 O -0.433 6.433 10 C 0.016 3.984 11 H 0.137 0.863 12 C -0.217 4.217 13 N -0.360 5.360 14 C 0.347 3.653 15 O -0.412 6.412 16 C -0.134 4.134 17 C -0.103 4.103 18 C -0.146 4.146 19 C -0.115 4.115 20 C -0.148 4.148 21 C -0.079 4.079 22 N -0.360 5.360 23 C -0.368 4.368 24 H 0.091 0.909 25 C -0.206 4.206 26 N -0.575 5.575 27 Si 0.733 3.267 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.220 1.220 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.246 0.754 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.144 0.856 48 H 0.147 0.853 49 H 0.155 0.845 50 H 0.219 0.781 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.051 -8.216 -3.230 20.997 hybrid contribution -0.924 0.064 0.353 0.992 sum 18.127 -8.152 -2.877 20.082 Atomic orbital electron populations 1.21836 0.94979 1.00847 1.02104 1.21616 0.96833 0.96560 0.97883 1.21797 0.99633 0.96793 1.01700 1.20550 0.89187 0.96030 0.88556 0.92826 1.21810 0.95868 0.98567 0.85054 1.45917 1.06265 1.61602 1.21556 1.20418 0.83192 0.78996 0.87967 1.90650 1.55519 1.50246 1.46883 1.20803 0.81092 0.98794 0.97760 0.86347 1.22122 1.02256 0.94107 1.03175 1.45644 1.06131 1.74937 1.09261 1.18263 0.87194 0.76205 0.83624 1.90793 1.69698 1.49624 1.31062 1.19941 0.92623 1.06256 0.94624 1.21407 0.94765 0.96935 0.97197 1.21131 0.93954 1.01014 0.98521 1.21389 1.00244 0.97317 0.92529 1.21175 0.93955 1.01144 0.98507 1.21323 0.94027 0.94734 0.97788 1.42432 1.18065 1.47475 1.28008 1.19216 0.92784 1.18044 1.06752 0.90887 1.24723 0.98233 0.99187 0.98502 1.69664 1.36728 1.28949 1.22179 0.86215 0.84328 0.77409 0.78788 1.20594 1.21932 1.21994 0.94133 0.89342 0.95025 0.93287 0.93701 0.94303 0.91222 0.91176 0.91842 0.74999 0.90357 0.91939 0.90880 0.75421 0.85351 0.85329 0.85605 0.85293 0.84523 0.78051 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.26 37.16 0.31 -2.13 16 2 C -0.11 -1.75 2.80 -90.62 -0.25 -2.01 16 3 C -0.14 -2.34 8.69 37.16 0.32 -2.02 16 4 C 0.17 2.90 2.35 -67.93 -0.16 2.75 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C 0.11 1.77 5.02 -4.04 -0.02 1.75 16 7 N -0.70 -10.83 5.28 -60.29 -0.32 -11.15 16 8 C 0.51 7.81 7.22 -10.99 -0.08 7.73 16 9 O -0.55 -9.63 15.83 5.56 0.09 -9.54 16 10 C 0.12 1.69 2.99 -69.08 -0.21 1.48 16 11 H 0.12 1.79 7.58 -51.93 -0.39 1.40 16 12 C -0.16 -1.83 9.38 37.16 0.35 -1.48 16 13 N -0.71 -9.01 4.91 -55.88 -0.27 -9.28 16 14 C 0.56 7.69 7.74 -12.33 -0.10 7.59 16 15 O -0.53 -9.00 16.01 5.33 0.09 -8.91 16 16 C -0.13 -1.49 5.87 -104.97 -0.62 -2.10 16 17 C -0.08 -0.77 9.54 -39.18 -0.37 -1.15 16 18 C -0.13 -0.97 10.03 -39.64 -0.40 -1.37 16 19 C -0.10 -0.68 10.04 -39.49 -0.40 -1.08 16 20 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 21 C -0.06 -0.62 9.60 -39.18 -0.38 -0.99 16 22 N -0.72 -15.40 3.67 -53.42 -0.20 -15.60 16 23 C -0.24 -5.76 7.57 -15.06 -0.11 -5.88 16 24 H 0.07 1.75 7.40 -52.49 -0.39 1.37 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -26.16 13.06 55.49 0.72 -25.43 16 27 Si 0.90 21.21 29.55 -169.99 -5.02 16.18 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.69 6.32 -51.93 -0.33 0.37 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.34 7.60 -51.93 -0.39 0.95 16 38 H 0.07 1.20 6.17 -51.93 -0.32 0.88 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.41 6.48 7.56 -40.82 -0.31 6.17 16 41 H 0.08 0.86 7.57 -51.93 -0.39 0.47 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.41 4.71 5.82 -40.82 -0.24 4.47 16 45 H 0.13 1.01 6.41 -52.49 -0.34 0.68 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 48 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 49 H 0.14 1.43 7.65 -52.49 -0.40 1.03 16 50 H 0.39 9.18 7.80 -40.82 -0.32 8.86 16 51 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 413.69 15.07 6.23 6.23 Total: -1.00 -30.15 413.69 -9.20 -39.35 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -7.91 Total: 18.85 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.60 Total: -0.71 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.06 Total: -61.46 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.17 Total: -18.45 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.15 -9.20 -39.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732569625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.975 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds