Wall clock time and date at job start Wed Apr 1 2020 05:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46990 * 2 1 4 4 C 1.52999 * 109.46780 * 119.99433 * 2 1 3 5 5 H 1.08996 * 109.47177 * 60.00733 * 4 2 1 6 6 C 1.53005 * 109.47060 * 180.02562 * 4 2 1 7 7 N 1.46499 * 109.47130 * 174.99810 * 6 4 2 8 8 C 1.34776 * 119.99886 * 180.02562 * 7 6 4 9 9 O 1.21281 * 119.99800 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00234 * 180.02562 * 8 7 6 11 11 H 1.08997 * 109.47261 * 300.00738 * 10 8 7 12 12 C 1.53005 * 109.46781 * 60.00183 * 10 8 7 13 13 N 1.46494 * 109.47096 * 179.97438 * 10 8 7 14 14 C 1.34784 * 119.99635 * 155.00208 * 13 10 8 15 15 O 1.21543 * 119.99981 * 0.02562 * 14 13 10 16 16 C 1.47843 * 119.99605 * 179.97438 * 14 13 10 17 17 C 1.39573 * 120.14845 * 359.72505 * 16 14 13 18 18 C 1.37963 * 119.85278 * 179.79136 * 17 16 14 19 19 C 1.38360 * 120.14494 * 0.48134 * 18 17 16 20 20 C 1.38355 * 120.28977 * 359.74814 * 19 18 17 21 21 C 1.37956 * 120.14972 * 0.02562 * 20 19 18 22 22 N 1.46503 * 109.47441 * 300.00219 * 4 2 1 23 23 C 1.36934 * 119.99709 * 85.00100 * 22 4 2 24 24 H 1.08002 * 120.00558 * 0.02562 * 23 22 4 25 25 C 1.38809 * 119.99882 * 180.02562 * 23 22 4 26 26 N 1.31625 * 120.00025 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00204 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47224 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47314 * 119.99742 * 27 25 23 30 30 H 1.48500 * 109.47158 * 239.99977 * 27 25 23 31 31 H 1.09010 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47448 * 300.00236 * 1 2 3 33 33 H 1.08998 * 109.47226 * 60.00547 * 1 2 3 34 34 H 1.08996 * 109.47448 * 239.99764 * 2 1 3 35 35 H 1.08991 * 109.47431 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47128 * 299.99947 * 3 2 1 37 37 H 1.09000 * 109.47653 * 59.99462 * 3 2 1 38 38 H 1.09002 * 109.46664 * 55.00391 * 6 4 2 39 39 H 1.08990 * 109.47169 * 295.00457 * 6 4 2 40 40 H 0.97000 * 120.00321 * 0.02562 * 7 6 4 41 41 H 1.09005 * 109.46855 * 299.99909 * 12 10 8 42 42 H 1.08996 * 109.47503 * 60.00150 * 12 10 8 43 43 H 1.08997 * 109.47041 * 180.02562 * 12 10 8 44 44 H 0.96995 * 120.00292 * 335.27641 * 13 10 8 45 45 H 1.08001 * 120.07226 * 359.97438 * 17 16 14 46 46 H 1.08000 * 119.92699 * 180.23376 * 18 17 16 47 47 H 1.07992 * 119.85104 * 179.72284 * 19 18 17 48 48 H 1.08007 * 119.92325 * 179.97438 * 20 19 18 49 49 H 1.08001 * 120.07492 * 179.97438 * 21 20 19 50 50 H 0.96992 * 119.99739 * 265.00209 * 22 4 2 51 51 H 0.97001 * 119.99861 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6767 -1.7488 1.2494 6 6 3.5700 -0.7206 1.2497 7 7 4.0582 -1.3042 2.5016 8 6 5.3832 -1.4073 2.7254 9 8 6.1714 -1.0166 1.8905 10 6 5.8855 -2.0082 4.0129 11 1 5.5213 -1.4196 4.8549 12 6 5.3766 -3.4457 4.1374 13 7 7.3505 -2.0075 4.0132 14 6 8.0241 -2.0078 5.1807 15 8 7.4160 -2.0091 6.2331 16 6 9.5025 -2.0077 5.1810 17 6 10.2038 -2.0131 3.9743 18 6 11.5834 -2.0087 3.9817 19 6 12.2718 -2.0089 5.1818 20 6 11.5827 -2.0083 6.3816 21 6 10.2031 -2.0081 6.3882 22 7 1.5515 -0.0305 2.4455 23 6 0.3100 -0.3209 2.9448 24 1 -0.3091 -1.0594 2.4571 25 6 -0.1530 0.3338 4.0778 26 7 0.6016 1.2335 4.6725 27 14 -1.8464 -0.0628 4.7594 28 1 -2.4890 -1.1018 3.9150 29 1 -1.7147 -0.5664 6.1501 30 1 -2.6820 1.1648 4.7545 31 1 -0.3634 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 3.9329 0.3033 1.1604 39 1 3.9337 -1.3098 0.4080 40 1 3.4278 -1.6164 3.1695 41 1 4.2866 -3.4466 4.1370 42 1 5.7408 -4.0344 3.2955 43 1 5.7395 -3.8802 5.0689 44 1 7.8357 -2.0029 3.1734 45 1 9.6676 -2.0178 3.0368 46 1 12.1272 -2.0090 3.0486 47 1 13.3517 -2.0099 5.1821 48 1 12.1260 -2.0089 7.3150 49 1 9.6664 -2.0081 7.3255 50 1 2.1076 0.6325 2.8837 51 1 0.2782 1.6908 5.4645 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732569625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:18 Heat of formation + Delta-G solvation = -64.454686 kcal Electronic energy + Delta-G solvation = -30440.064120 eV Core-core repulsion = 26338.422375 eV Total energy + Delta-G solvation = -4101.641745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.67707 -40.67649 -39.27461 -38.79423 -36.18810 -35.41110 -34.72598 -33.05457 -31.96633 -31.88364 -31.05441 -29.35011 -27.73695 -26.19904 -25.51991 -24.51847 -23.55813 -23.16210 -21.57531 -21.34599 -20.29948 -19.58843 -19.11804 -17.87892 -17.74995 -17.03153 -16.85245 -16.53322 -16.37898 -16.12524 -15.81219 -15.77410 -15.46052 -15.14619 -15.02061 -14.76149 -14.57921 -14.48402 -14.30810 -14.01169 -13.71402 -13.53667 -13.34204 -13.31396 -12.92512 -12.81646 -12.72012 -12.65873 -12.58748 -12.40298 -12.12203 -12.02928 -11.91717 -11.86656 -11.36508 -11.20140 -11.17214 -11.01036 -10.80838 -10.39861 -10.03360 -9.96108 -9.91629 -8.91860 -7.85158 -5.10662 -0.16823 0.40820 1.46753 1.49118 1.52066 1.58949 1.68573 1.81958 2.37176 2.61493 2.88830 3.46760 3.52213 3.66577 3.89606 3.91509 3.96305 3.98632 4.01610 4.07028 4.24404 4.29779 4.37271 4.45860 4.46350 4.51303 4.58757 4.70790 4.72302 4.78327 4.85368 4.97215 5.00247 5.05461 5.09811 5.14317 5.18430 5.24463 5.29900 5.34076 5.34720 5.44336 5.50115 5.51823 5.61184 5.66282 5.85120 5.94396 6.35239 6.36106 6.47566 7.02904 7.09241 7.43850 8.16470 8.40330 9.37779 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.002306 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.120292 B =12138.555610 C =13448.350483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.168 3.832 5 H 0.060 0.940 6 C 0.119 3.881 7 N -0.701 5.701 8 C 0.514 3.486 9 O -0.572 6.572 10 C 0.126 3.874 11 H 0.099 0.901 12 C -0.149 4.149 13 N -0.699 5.699 14 C 0.557 3.443 15 O -0.576 6.576 16 C -0.157 4.157 17 C -0.089 4.089 18 C -0.128 4.128 19 C -0.088 4.088 20 C -0.130 4.130 21 C -0.079 4.079 22 N -0.721 5.721 23 C -0.206 4.206 24 H 0.081 0.919 25 C -0.073 4.073 26 N -0.967 5.967 27 Si 0.953 3.047 28 H -0.265 1.265 29 H -0.302 1.302 30 H -0.305 1.305 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.412 0.588 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.415 0.585 45 H 0.137 0.863 46 H 0.157 0.843 47 H 0.160 0.840 48 H 0.153 0.847 49 H 0.123 0.877 50 H 0.372 0.628 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.035 -9.930 -5.760 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.193 4.193 4 C 0.059 3.941 5 H 0.078 0.922 6 C -0.005 4.005 7 N -0.352 5.352 8 C 0.300 3.700 9 O -0.453 6.453 10 C 0.018 3.982 11 H 0.117 0.883 12 C -0.208 4.208 13 N -0.353 5.353 14 C 0.346 3.654 15 O -0.457 6.457 16 C -0.160 4.160 17 C -0.107 4.107 18 C -0.146 4.146 19 C -0.106 4.106 20 C -0.148 4.148 21 C -0.098 4.098 22 N -0.361 5.361 23 C -0.338 4.338 24 H 0.098 0.902 25 C -0.266 4.266 26 N -0.619 5.619 27 Si 0.785 3.215 28 H -0.189 1.189 29 H -0.230 1.230 30 H -0.233 1.233 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.249 0.751 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.254 0.746 45 H 0.155 0.845 46 H 0.175 0.825 47 H 0.177 0.823 48 H 0.170 0.830 49 H 0.141 0.859 50 H 0.204 0.796 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.926 -9.763 -5.644 23.771 hybrid contribution -1.399 0.511 0.951 1.767 sum 19.527 -9.252 -4.693 22.112 Atomic orbital electron populations 1.21757 0.95614 1.00916 1.01131 1.21582 0.96193 0.96506 0.98269 1.21721 1.00154 0.96727 1.00717 1.20725 0.90182 0.95814 0.87404 0.92170 1.21720 0.94554 0.98355 0.85859 1.45902 1.06344 1.61433 1.21493 1.20579 0.82887 0.78473 0.88096 1.90635 1.55875 1.51085 1.47666 1.20734 0.81749 0.99701 0.96044 0.88292 1.22062 1.02563 0.92662 1.03490 1.45604 1.05733 1.74502 1.09464 1.18745 0.88403 0.75156 0.83063 1.90758 1.70758 1.51792 1.32377 1.19874 0.91038 1.09023 0.96080 1.21568 0.95795 0.96794 0.96592 1.21515 0.93244 0.99713 1.00086 1.21830 1.01948 0.95066 0.91763 1.21472 0.92873 1.00193 1.00239 1.21396 0.95355 0.95960 0.97051 1.42522 1.17072 1.47322 1.29224 1.19491 0.93224 1.15909 1.05166 0.90160 1.25303 1.00960 1.00364 0.99927 1.69803 1.38188 1.31073 1.22829 0.85353 0.81464 0.76837 0.77824 1.18945 1.23028 1.23340 0.93467 0.93126 0.93190 0.90074 0.92822 0.92636 0.94793 0.92391 0.89779 0.75123 0.89751 0.90485 0.91402 0.74592 0.84502 0.82518 0.82280 0.82965 0.85881 0.79567 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 8.26 71.98 0.59 -3.87 16 2 C -0.10 -3.15 2.80 -10.79 -0.03 -3.18 16 3 C -0.14 -4.27 8.69 71.98 0.63 -3.65 16 4 C 0.17 5.53 2.35 44.99 0.11 5.64 16 5 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 6 C 0.12 3.59 5.02 86.38 0.43 4.02 16 7 N -0.70 -21.15 5.28 -463.06 -2.44 -23.59 16 8 C 0.51 15.55 7.22 87.66 0.63 16.18 16 9 O -0.57 -19.39 15.83 -3.03 -0.05 -19.44 16 10 C 0.13 3.50 2.99 44.25 0.13 3.64 16 11 H 0.10 3.17 7.58 -2.39 -0.02 3.15 16 12 C -0.15 -3.42 9.38 71.98 0.68 -2.75 16 13 N -0.70 -18.18 4.91 -448.99 -2.20 -20.39 16 14 C 0.56 16.00 7.74 86.78 0.67 16.67 16 15 O -0.58 -20.69 16.01 -3.85 -0.06 -20.75 16 16 C -0.16 -3.62 5.87 -20.09 -0.12 -3.73 16 17 C -0.09 -1.53 9.54 22.53 0.21 -1.31 16 18 C -0.13 -1.58 10.03 22.23 0.22 -1.35 16 19 C -0.09 -0.97 10.04 22.33 0.22 -0.75 16 20 C -0.13 -1.84 10.03 22.23 0.22 -1.62 16 21 C -0.08 -1.65 9.60 22.53 0.22 -1.43 16 22 N -0.72 -30.90 3.67 -322.93 -1.19 -32.08 16 23 C -0.21 -9.97 7.57 84.03 0.64 -9.34 16 24 H 0.08 3.75 7.40 -2.91 -0.02 3.73 16 25 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 26 N -0.97 -56.43 13.06 21.65 0.28 -56.14 16 27 Si 0.95 44.40 29.55 68.60 2.03 46.43 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 30 H -0.31 -14.69 7.11 99.48 0.71 -13.98 16 31 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.05 2.04 6.01 -2.39 -0.01 2.03 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.57 6.32 -2.39 -0.02 1.56 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.03 1.30 7.60 -2.39 -0.02 1.28 16 38 H 0.06 1.92 6.17 -2.39 -0.01 1.90 16 39 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.41 12.81 7.56 -92.71 -0.70 12.11 16 41 H 0.08 1.82 7.57 -2.38 -0.02 1.80 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.41 9.49 5.82 -92.71 -0.54 8.95 16 45 H 0.14 2.00 6.41 -2.91 -0.02 1.98 16 46 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 47 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 48 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.12 2.80 7.65 -2.91 -0.02 2.78 16 50 H 0.37 18.11 7.80 -92.71 -0.72 17.38 16 51 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -67.23 413.69 1.29 -65.93 By element: Atomic # 1 Polarization: 51.33 SS G_CDS: -1.00 Total: 50.33 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 5.93 Total: 9.72 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -5.55 Total: -132.21 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.11 Total: -40.19 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.23 1.29 -65.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732569625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.477 kcal (2) G-P(sol) polarization free energy of solvation -67.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds