Wall clock time and date at job start Wed Apr 1 2020 05:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46450 * 2 1 4 4 O 1.42896 * 109.47077 * 240.00322 * 2 1 3 5 5 C 1.42905 * 114.00313 * 89.99674 * 4 2 1 6 6 C 1.50698 * 109.46996 * 179.97438 * 5 4 2 7 7 C 1.38653 * 120.78594 * 90.00447 * 6 5 4 8 8 C 1.38206 * 119.15577 * 180.29577 * 7 6 5 9 9 N 1.31866 * 120.76732 * 359.44656 * 8 7 6 10 10 C 1.31871 * 121.72391 * 0.54396 * 9 8 7 11 11 C 1.38205 * 120.76552 * 359.74637 * 10 9 8 12 12 C 1.50698 * 109.46982 * 119.99928 * 2 1 3 13 13 O 1.21281 * 119.99704 * 120.00682 * 12 2 1 14 14 N 1.34777 * 120.00019 * 299.99782 * 12 2 1 15 15 C 1.46508 * 119.99676 * 180.02562 * 14 12 2 16 16 H 1.09001 * 108.44274 * 327.31205 * 15 14 12 17 17 C 1.52564 * 108.50927 * 209.76836 * 15 14 12 18 18 C 1.50884 * 109.35677 * 153.73241 * 17 15 14 19 19 C 1.53944 * 110.09199 * 91.88817 * 18 17 15 20 20 N 1.47608 * 112.14434 * 319.43012 * 19 18 17 21 21 C 1.36931 * 118.64317 * 137.89243 * 20 19 18 22 22 H 1.08000 * 120.00444 * 319.20456 * 21 20 19 23 23 C 1.38814 * 119.99780 * 139.20526 * 21 20 19 24 24 N 1.31623 * 119.99877 * 156.28377 * 23 21 20 25 25 Si 1.86801 * 120.00053 * 336.27636 * 23 21 20 26 26 H 1.48497 * 109.46901 * 95.53381 * 25 23 21 27 27 H 1.48497 * 109.46988 * 215.53263 * 25 23 21 28 28 H 1.48499 * 109.47235 * 335.53695 * 25 23 21 29 29 C 1.44576 * 122.71027 * 317.87460 * 20 19 18 30 30 C 1.47090 * 108.51462 * 84.99977 * 15 14 12 31 31 H 1.09000 * 109.47414 * 59.99997 * 1 2 3 32 32 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.47170 * 299.99703 * 1 2 3 34 34 H 1.09000 * 109.46450 * 59.99493 * 5 4 2 35 35 H 1.09003 * 109.46771 * 300.00322 * 5 4 2 36 36 H 1.07997 * 120.42190 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.61488 * 179.72147 * 8 7 6 38 38 H 1.08005 * 119.61354 * 179.72896 * 10 9 8 39 39 H 1.07997 * 120.41919 * 179.97438 * 11 10 9 40 40 H 0.96996 * 120.00142 * 0.02562 * 14 12 2 41 41 H 1.09000 * 109.49348 * 273.69761 * 17 15 14 42 42 H 1.09006 * 109.49374 * 33.76666 * 17 15 14 43 43 H 1.08993 * 109.36667 * 331.69369 * 18 17 15 44 44 H 1.09006 * 109.26316 * 212.00681 * 18 17 15 45 45 H 1.09001 * 108.94548 * 198.74950 * 19 18 17 46 46 H 1.08994 * 108.88276 * 80.07565 * 19 18 17 47 47 H 0.97005 * 120.00024 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.45452 * 330.68082 * 29 20 19 49 49 H 1.09002 * 109.42876 * 210.74609 * 29 20 19 50 50 H 1.09004 * 109.32788 * 304.32165 * 30 15 14 51 51 H 1.09007 * 109.32615 * 63.79382 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7014 -0.6281 -3.4610 7 6 1.8146 -1.2090 -4.3547 8 6 2.3111 -1.9512 -5.4096 9 7 3.6106 -2.1003 -5.5768 10 6 4.4828 -1.5620 -4.7471 11 6 4.0602 -0.8115 -3.6663 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1191 14 7 1.7067 -0.2499 2.4546 15 6 2.1956 -0.9402 3.6508 16 1 2.2651 -2.0054 3.4299 17 6 1.1787 -0.7463 4.7714 18 6 1.2804 -1.8958 5.7435 19 6 2.2638 -1.5460 6.8751 20 7 3.4561 -0.8335 6.3756 21 6 3.9325 0.2316 7.0924 22 1 3.2441 0.9393 7.5300 23 6 5.3004 0.4015 7.2565 24 7 5.7892 1.5969 7.5107 25 14 6.4474 -1.0663 7.1169 26 1 6.9918 -1.1395 5.7373 27 1 7.5651 -0.9146 8.0827 28 1 5.6970 -2.3115 7.4196 29 6 4.1419 -1.2139 5.1610 30 6 3.5429 -0.4388 3.9616 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 2.9318 0.9514 -2.0450 35 1 1.2537 0.6548 -2.5588 36 1 0.7494 -1.0867 -4.2257 37 1 1.6269 -2.4107 -6.1076 38 1 5.5396 -1.7096 -4.9141 39 1 4.7794 -0.3735 -2.9900 40 1 1.1488 0.5386 2.5436 41 1 1.3846 0.1891 5.2916 42 1 0.1740 -0.7147 4.3496 43 1 1.6343 -2.7830 5.2184 44 1 0.2967 -2.0956 6.1685 45 1 2.5811 -2.4664 7.3653 46 1 1.7538 -0.9154 7.6032 47 1 6.7451 1.7158 7.6250 48 1 4.0226 -2.2849 4.9970 49 1 5.2018 -0.9768 5.2536 50 1 4.1859 -0.5682 3.0910 51 1 3.4850 0.6211 4.2097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733764320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:22 Heat of formation + Delta-G solvation = -19.774030 kcal Electronic energy + Delta-G solvation = -30668.664647 eV Core-core repulsion = 26568.960401 eV Total energy + Delta-G solvation = -4099.704246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.56178 -40.13605 -38.49123 -37.39831 -34.87130 -33.82005 -32.90237 -31.88500 -31.53515 -31.24901 -30.17389 -27.25055 -26.31233 -24.94600 -23.88356 -23.77796 -23.04417 -22.34023 -20.46935 -20.32312 -19.31753 -17.74868 -17.40086 -16.84323 -16.70455 -16.56859 -16.12834 -15.93280 -15.46571 -15.13684 -14.57502 -14.50078 -14.35062 -14.11492 -13.96797 -13.88865 -13.52466 -13.39110 -13.07370 -12.98230 -12.68519 -12.59162 -12.36317 -12.07065 -11.91573 -11.89376 -11.62183 -11.57436 -10.89325 -10.83142 -10.56616 -10.34281 -10.26722 -10.19004 -10.08595 -9.99525 -9.86756 -9.81526 -9.58657 -9.46918 -9.42191 -8.86069 -8.47671 -6.74802 -6.02272 -3.44125 0.78782 0.82147 2.67653 2.80591 3.34330 3.44989 3.48255 3.55125 3.78314 4.14911 4.31479 4.32962 4.53258 4.53590 4.64112 4.68627 4.76255 4.79251 4.92661 4.99116 5.00101 5.05294 5.22122 5.28273 5.28346 5.34946 5.41151 5.45375 5.54594 5.60939 5.74230 5.79042 5.89834 5.95951 6.02596 6.17386 6.23232 6.29081 6.35296 6.41342 6.52048 6.61020 6.66361 6.75953 6.79160 6.81559 6.86775 7.06588 7.62185 7.63734 8.09624 8.32648 8.38618 9.05108 9.72219 10.11445 11.13075 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.002249 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.806396 B =12448.446732 C =13480.388032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 H 0.088 0.912 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.152 4.152 8 C 0.094 3.906 9 N -0.483 5.483 10 C 0.097 3.903 11 C -0.148 4.148 12 C 0.511 3.489 13 O -0.521 6.521 14 N -0.724 5.724 15 C 0.162 3.838 16 H 0.074 0.926 17 C -0.113 4.113 18 C -0.132 4.132 19 C 0.146 3.854 20 N -0.603 5.603 21 C -0.274 4.274 22 H 0.075 0.925 23 C 0.040 3.960 24 N -0.898 5.898 25 Si 0.873 3.127 26 H -0.285 1.285 27 H -0.301 1.301 28 H -0.269 1.269 29 C 0.153 3.847 30 C -0.151 4.151 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.396 0.604 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.057 0.943 47 H 0.263 0.737 48 H 0.035 0.965 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -1.106 -21.279 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.106 0.894 4 O -0.266 6.266 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.172 4.172 8 C -0.063 4.063 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.168 4.168 12 C 0.295 3.705 13 O -0.395 6.395 14 N -0.377 5.377 15 C 0.059 3.941 16 H 0.092 0.908 17 C -0.151 4.151 18 C -0.171 4.171 19 C 0.021 3.979 20 N -0.326 5.326 21 C -0.402 4.402 22 H 0.093 0.907 23 C -0.161 4.161 24 N -0.538 5.538 25 Si 0.703 3.297 26 H -0.213 1.213 27 H -0.229 1.229 28 H -0.194 1.194 29 C 0.026 3.974 30 C -0.192 4.192 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.156 0.844 40 H 0.229 0.771 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.705 -2.447 -22.011 25.050 hybrid contribution 0.188 0.494 0.698 0.876 sum -11.517 -1.952 -21.313 24.305 Atomic orbital electron populations 1.22240 0.93559 1.03873 1.03095 1.21975 0.95050 0.96523 0.85693 0.89405 1.88129 1.86621 1.33451 1.18426 1.21419 1.00100 0.91704 0.84653 1.19963 0.93710 0.96793 0.94713 1.22072 1.00942 0.98305 0.95873 1.22771 0.91999 0.95416 0.96082 1.67671 1.03385 1.19591 1.28579 1.22804 0.99782 0.93001 0.90421 1.22145 0.95931 0.99706 0.99018 1.20227 0.80874 0.85106 0.84291 1.90732 1.36684 1.25706 1.86405 1.46379 1.53609 1.32079 1.05600 1.20038 0.94303 0.97069 0.82652 0.90790 1.21254 0.96650 1.01396 0.95823 1.21759 0.99702 0.97573 0.98048 1.21274 0.87650 0.95308 0.93648 1.43894 1.30763 1.35569 1.22374 1.18757 0.90844 1.00340 1.30300 0.90746 1.25523 0.97292 0.95902 0.97398 1.69893 1.12967 1.20776 1.50195 0.86974 0.80581 0.85538 0.76590 1.21304 1.22882 1.19375 1.20960 0.95936 0.95250 0.85257 1.21738 0.95147 1.02781 0.99534 0.91370 0.91027 0.90703 0.91638 0.91722 0.84637 0.82583 0.82448 0.84428 0.77063 0.89843 0.92700 0.92647 0.91977 0.96420 0.92405 0.92742 0.94615 0.92688 0.92863 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.42 37.16 0.35 -0.91 16 2 C 0.07 0.71 3.14 -27.88 -0.09 0.62 16 3 H 0.09 0.70 7.79 -51.92 -0.40 0.29 16 4 O -0.35 -4.21 9.50 -55.14 -0.52 -4.73 16 5 C 0.10 0.83 5.92 36.00 0.21 1.04 16 6 C -0.04 -0.41 5.55 -104.32 -0.58 -0.99 16 7 C -0.15 -1.27 9.82 -39.44 -0.39 -1.66 16 8 C 0.09 0.83 11.18 -17.55 -0.20 0.63 16 9 N -0.48 -5.14 10.36 -13.25 -0.14 -5.27 16 10 C 0.10 0.92 11.18 -17.55 -0.20 0.72 16 11 C -0.15 -1.40 9.82 -39.44 -0.39 -1.79 16 12 C 0.51 7.36 7.08 -10.99 -0.08 7.28 16 13 O -0.52 -10.06 16.00 -14.35 -0.23 -10.29 16 14 N -0.72 -9.44 4.78 -56.81 -0.27 -9.71 16 15 C 0.16 2.60 1.96 -70.99 -0.14 2.46 16 16 H 0.07 1.31 6.65 -51.93 -0.35 0.97 16 17 C -0.11 -1.65 5.00 -28.02 -0.14 -1.79 16 18 C -0.13 -1.99 5.71 -27.30 -0.16 -2.15 16 19 C 0.15 2.78 6.24 -2.94 -0.02 2.76 16 20 N -0.60 -13.75 1.79 -172.09 -0.31 -14.06 16 21 C -0.27 -7.36 9.66 -15.06 -0.15 -7.51 16 22 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 23 C 0.04 1.13 5.22 -17.43 -0.09 1.04 16 24 N -0.90 -26.88 13.97 55.49 0.78 -26.10 16 25 Si 0.87 22.29 25.29 -169.99 -4.30 18.00 16 26 H -0.29 -7.18 6.70 56.52 0.38 -6.81 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 28 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.15 3.37 4.51 -4.09 -0.02 3.35 16 30 C -0.15 -2.91 5.20 -28.59 -0.15 -3.06 16 31 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.44 7.56 -51.92 -0.39 0.04 16 34 H 0.07 0.48 8.05 -51.93 -0.42 0.07 16 35 H 0.06 0.39 7.83 -51.93 -0.41 -0.02 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.40 3.91 8.03 -40.82 -0.33 3.58 16 41 H 0.08 1.39 7.48 -51.93 -0.39 1.00 16 42 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 43 H 0.05 0.85 7.31 -51.93 -0.38 0.47 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 1.09 7.89 -51.93 -0.41 0.68 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 49 H 0.06 1.35 3.59 -51.93 -0.19 1.16 16 50 H 0.05 1.06 7.95 -51.93 -0.41 0.64 16 51 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 404.49 15.07 6.10 6.10 Total: -1.00 -35.07 404.49 -9.38 -44.45 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.28 Total: 1.59 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.20 Total: 0.05 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.06 Total: -55.15 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.75 Total: -15.03 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.30 Total: 18.00 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.07 -9.38 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733764320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.675 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds