Wall clock time and date at job start Wed Apr 1 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46450 * 2 1 4 4 O 1.42896 * 109.47077 * 240.00322 * 2 1 3 5 5 C 1.42905 * 114.00313 * 89.99674 * 4 2 1 6 6 C 1.50698 * 109.46996 * 179.97438 * 5 4 2 7 7 C 1.38653 * 120.78594 * 90.00447 * 6 5 4 8 8 C 1.38206 * 119.15577 * 180.29577 * 7 6 5 9 9 N 1.31866 * 120.76732 * 359.44656 * 8 7 6 10 10 C 1.31871 * 121.72391 * 0.54396 * 9 8 7 11 11 C 1.38205 * 120.76552 * 359.74637 * 10 9 8 12 12 C 1.50698 * 109.46982 * 119.99928 * 2 1 3 13 13 O 1.21281 * 119.99704 * 120.00682 * 12 2 1 14 14 N 1.34777 * 120.00019 * 299.99782 * 12 2 1 15 15 C 1.46508 * 119.99676 * 180.02562 * 14 12 2 16 16 H 1.09001 * 108.44274 * 327.31205 * 15 14 12 17 17 C 1.52564 * 108.50927 * 209.76836 * 15 14 12 18 18 C 1.50884 * 109.35677 * 153.73241 * 17 15 14 19 19 C 1.53944 * 110.09199 * 91.88817 * 18 17 15 20 20 N 1.47608 * 112.14434 * 319.43012 * 19 18 17 21 21 C 1.36931 * 118.64317 * 137.89243 * 20 19 18 22 22 H 1.08000 * 120.00444 * 319.20456 * 21 20 19 23 23 C 1.38814 * 119.99780 * 139.20526 * 21 20 19 24 24 N 1.31623 * 119.99877 * 156.28377 * 23 21 20 25 25 Si 1.86801 * 120.00053 * 336.27636 * 23 21 20 26 26 H 1.48497 * 109.46901 * 95.53381 * 25 23 21 27 27 H 1.48497 * 109.46988 * 215.53263 * 25 23 21 28 28 H 1.48499 * 109.47235 * 335.53695 * 25 23 21 29 29 C 1.44576 * 122.71027 * 317.87460 * 20 19 18 30 30 C 1.47090 * 108.51462 * 84.99977 * 15 14 12 31 31 H 1.09000 * 109.47414 * 59.99997 * 1 2 3 32 32 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.47170 * 299.99703 * 1 2 3 34 34 H 1.09000 * 109.46450 * 59.99493 * 5 4 2 35 35 H 1.09003 * 109.46771 * 300.00322 * 5 4 2 36 36 H 1.07997 * 120.42190 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.61488 * 179.72147 * 8 7 6 38 38 H 1.08005 * 119.61354 * 179.72896 * 10 9 8 39 39 H 1.07997 * 120.41919 * 179.97438 * 11 10 9 40 40 H 0.96996 * 120.00142 * 0.02562 * 14 12 2 41 41 H 1.09000 * 109.49348 * 273.69761 * 17 15 14 42 42 H 1.09006 * 109.49374 * 33.76666 * 17 15 14 43 43 H 1.08993 * 109.36667 * 331.69369 * 18 17 15 44 44 H 1.09006 * 109.26316 * 212.00681 * 18 17 15 45 45 H 1.09001 * 108.94548 * 198.74950 * 19 18 17 46 46 H 1.08994 * 108.88276 * 80.07565 * 19 18 17 47 47 H 0.97005 * 120.00024 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.45452 * 330.68082 * 29 20 19 49 49 H 1.09002 * 109.42876 * 210.74609 * 29 20 19 50 50 H 1.09004 * 109.32788 * 304.32165 * 30 15 14 51 51 H 1.09007 * 109.32615 * 63.79382 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2941 6 6 2.7014 -0.6281 -3.4610 7 6 1.8146 -1.2090 -4.3547 8 6 2.3111 -1.9512 -5.4096 9 7 3.6106 -2.1003 -5.5768 10 6 4.4828 -1.5620 -4.7471 11 6 4.0602 -0.8115 -3.6663 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1191 14 7 1.7067 -0.2499 2.4546 15 6 2.1956 -0.9402 3.6508 16 1 2.2651 -2.0054 3.4299 17 6 1.1787 -0.7463 4.7714 18 6 1.2804 -1.8958 5.7435 19 6 2.2638 -1.5460 6.8751 20 7 3.4561 -0.8335 6.3756 21 6 3.9325 0.2316 7.0924 22 1 3.2441 0.9393 7.5300 23 6 5.3004 0.4015 7.2565 24 7 5.7892 1.5969 7.5107 25 14 6.4474 -1.0663 7.1169 26 1 6.9918 -1.1395 5.7373 27 1 7.5651 -0.9146 8.0827 28 1 5.6970 -2.3115 7.4196 29 6 4.1419 -1.2139 5.1610 30 6 3.5429 -0.4388 3.9616 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 2.9318 0.9514 -2.0450 35 1 1.2537 0.6548 -2.5588 36 1 0.7494 -1.0867 -4.2257 37 1 1.6269 -2.4107 -6.1076 38 1 5.5396 -1.7096 -4.9141 39 1 4.7794 -0.3735 -2.9900 40 1 1.1488 0.5386 2.5436 41 1 1.3846 0.1891 5.2916 42 1 0.1740 -0.7147 4.3496 43 1 1.6343 -2.7830 5.2184 44 1 0.2967 -2.0956 6.1685 45 1 2.5811 -2.4664 7.3653 46 1 1.7538 -0.9154 7.6032 47 1 6.7451 1.7158 7.6250 48 1 4.0226 -2.2849 4.9970 49 1 5.2018 -0.9768 5.2536 50 1 4.1859 -0.5682 3.0910 51 1 3.4850 0.6211 4.2097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733764320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:21 Heat of formation + Delta-G solvation = -42.717400 kcal Electronic energy + Delta-G solvation = -30669.659546 eV Core-core repulsion = 26568.960401 eV Total energy + Delta-G solvation = -4100.699145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.42015 -41.07673 -39.66831 -38.54289 -36.39063 -34.65200 -34.35027 -33.13270 -32.94924 -32.17293 -31.32089 -27.97213 -27.89036 -26.21658 -25.24259 -24.58641 -24.43097 -22.99383 -21.80778 -21.57665 -20.78928 -18.74385 -18.54388 -18.25009 -17.64043 -17.43391 -17.41112 -16.83750 -16.54565 -16.28788 -16.02527 -15.72755 -15.44424 -15.43331 -14.97212 -14.82098 -14.69734 -14.54731 -14.30546 -14.23695 -13.84579 -13.69650 -13.59437 -13.34280 -13.15753 -12.97803 -12.74279 -12.51285 -12.36387 -12.33196 -12.18620 -12.00591 -11.82185 -11.59244 -11.46534 -11.40098 -11.07556 -10.77539 -10.65142 -10.49564 -10.46103 -10.11600 -10.08569 -8.67410 -8.21871 -5.58578 0.11245 0.17151 1.28696 1.37758 1.48363 1.60086 1.88610 2.40748 2.68863 3.03507 3.07800 3.39469 3.55059 3.59782 3.72233 3.74523 3.79405 3.94621 4.02860 4.09222 4.12147 4.17930 4.25141 4.33448 4.35923 4.37392 4.41212 4.56751 4.64674 4.67446 4.72231 4.81378 4.84816 4.85846 4.90695 4.95253 4.96443 5.07758 5.14809 5.22266 5.27811 5.32096 5.32420 5.40821 5.52035 5.56331 5.72903 5.97869 6.00046 6.20396 6.60390 6.97399 7.05970 7.27240 7.67773 8.06501 8.97454 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.002249 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.806396 B =12448.446732 C =13480.388032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.381 6.381 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.151 4.151 8 C 0.084 3.916 9 N -0.510 5.510 10 C 0.083 3.917 11 C -0.163 4.163 12 C 0.505 3.495 13 O -0.577 6.577 14 N -0.710 5.710 15 C 0.167 3.833 16 H 0.061 0.939 17 C -0.104 4.104 18 C -0.123 4.123 19 C 0.140 3.860 20 N -0.609 5.609 21 C -0.253 4.253 22 H 0.048 0.952 23 C -0.012 4.012 24 N -0.942 5.942 25 Si 0.928 3.072 26 H -0.284 1.284 27 H -0.306 1.306 28 H -0.263 1.263 29 C 0.148 3.852 30 C -0.135 4.135 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.173 0.827 39 H 0.143 0.857 40 H 0.414 0.586 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.019 0.981 46 H 0.056 0.944 47 H 0.262 0.738 48 H 0.049 0.951 49 H 0.028 0.972 50 H 0.041 0.959 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.601 -1.396 -22.599 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.133 0.867 4 O -0.300 6.300 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.171 4.171 8 C -0.073 4.073 9 N -0.220 5.220 10 C -0.073 4.073 11 C -0.183 4.183 12 C 0.292 3.708 13 O -0.456 6.456 14 N -0.364 5.364 15 C 0.063 3.937 16 H 0.079 0.921 17 C -0.142 4.142 18 C -0.162 4.162 19 C 0.016 3.984 20 N -0.333 5.333 21 C -0.383 4.383 22 H 0.066 0.934 23 C -0.209 4.209 24 N -0.586 5.586 25 Si 0.758 3.242 26 H -0.212 1.212 27 H -0.234 1.234 28 H -0.188 1.188 29 C 0.021 3.979 30 C -0.176 4.176 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.179 0.821 37 H 0.198 0.802 38 H 0.190 0.810 39 H 0.161 0.839 40 H 0.252 0.748 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.046 0.954 50 H 0.060 0.940 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.670 -2.730 -23.342 27.703 hybrid contribution 1.030 0.594 1.083 1.609 sum -13.639 -2.136 -22.258 26.192 Atomic orbital electron populations 1.22241 0.90896 1.03587 1.05348 1.22063 0.96828 0.96614 0.83260 0.86721 1.88083 1.87101 1.35296 1.19557 1.21602 1.01873 0.91218 0.83281 1.20271 0.93874 0.97221 0.95427 1.22373 1.02154 0.97406 0.95163 1.23264 0.91843 0.95388 0.96758 1.67691 1.04448 1.20502 1.29384 1.23103 1.00603 0.93113 0.90523 1.22330 0.96594 1.00074 0.99262 1.21116 0.79659 0.84450 0.85616 1.90706 1.39268 1.28377 1.87245 1.46162 1.53256 1.32362 1.04586 1.19763 0.93115 0.96374 0.84414 0.92064 1.21187 0.98008 1.00089 0.94951 1.21704 1.00125 0.97631 0.96719 1.21459 0.86859 0.94719 0.95366 1.43987 1.31835 1.35086 1.22419 1.18688 0.90242 1.00566 1.28771 0.93436 1.26029 0.98849 0.97537 0.98495 1.69990 1.13120 1.22376 1.53065 0.86084 0.78874 0.83019 0.76269 1.21188 1.23437 1.18760 1.20955 0.94604 0.96341 0.85972 1.21532 0.97110 1.01156 0.97798 0.88839 0.92541 0.88755 0.90865 0.88695 0.82075 0.80169 0.81018 0.83949 0.74847 0.91858 0.88909 0.92443 0.88481 0.96307 0.92573 0.92938 0.93263 0.95430 0.94004 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.42 71.98 0.68 -1.10 16 2 C 0.07 1.30 3.14 29.85 0.09 1.40 16 3 H 0.12 1.41 7.79 -2.38 -0.02 1.39 16 4 O -0.38 -8.52 9.50 -129.94 -1.23 -9.75 16 5 C 0.10 1.40 5.92 71.24 0.42 1.82 16 6 C -0.06 -1.05 5.55 -19.67 -0.11 -1.15 16 7 C -0.15 -2.24 9.82 22.36 0.22 -2.02 16 8 C 0.08 1.37 11.18 84.68 0.95 2.32 16 9 N -0.51 -10.68 10.36 -195.84 -2.03 -12.71 16 10 C 0.08 1.57 11.18 84.68 0.95 2.52 16 11 C -0.16 -3.04 9.82 22.36 0.22 -2.82 16 12 C 0.51 13.78 7.08 87.66 0.62 14.40 16 13 O -0.58 -22.28 16.00 16.00 0.26 -22.02 16 14 N -0.71 -16.95 4.78 -452.05 -2.16 -19.11 16 15 C 0.17 5.10 1.96 43.01 0.08 5.18 16 16 H 0.06 2.09 6.65 -2.39 -0.02 2.07 16 17 C -0.10 -2.74 5.00 29.76 0.15 -2.59 16 18 C -0.12 -3.33 5.71 30.23 0.17 -3.16 16 19 C 0.14 5.08 6.24 86.49 0.54 5.62 16 20 N -0.61 -27.58 1.79 -698.39 -1.25 -28.83 16 21 C -0.25 -13.78 9.66 84.04 0.81 -12.97 16 22 H 0.05 2.83 8.06 -2.91 -0.02 2.80 16 23 C -0.01 -0.69 5.22 84.86 0.44 -0.25 16 24 N -0.94 -57.98 13.97 21.65 0.30 -57.68 16 25 Si 0.93 47.03 25.29 68.60 1.73 48.76 16 26 H -0.28 -14.20 6.70 99.48 0.67 -13.53 16 27 H -0.31 -15.61 7.11 99.48 0.71 -14.91 16 28 H -0.26 -12.91 7.11 99.48 0.71 -12.21 16 29 C 0.15 6.49 4.51 87.37 0.39 6.88 16 30 C -0.13 -5.19 5.20 29.39 0.15 -5.04 16 31 H 0.09 0.58 7.87 -2.39 -0.02 0.56 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.65 7.56 -2.38 -0.02 0.64 16 34 H 0.07 0.92 8.05 -2.39 -0.02 0.90 16 35 H 0.10 0.78 7.83 -2.39 -0.02 0.76 16 36 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.41 6.81 8.03 -92.71 -0.74 6.06 16 41 H 0.06 1.97 7.48 -2.39 -0.02 1.96 16 42 H 0.09 1.79 8.05 -2.38 -0.02 1.77 16 43 H 0.06 1.58 7.31 -2.39 -0.02 1.56 16 44 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 2.04 7.89 -2.39 -0.02 2.02 16 47 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 48 H 0.05 2.01 8.06 -2.39 -0.02 1.99 16 49 H 0.03 1.36 3.59 -2.39 -0.01 1.35 16 50 H 0.04 1.68 7.95 -2.38 -0.02 1.66 16 51 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -79.71 404.49 2.54 -77.17 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.14 Total: 15.16 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.78 Total: 9.02 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -5.14 Total: -118.33 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.98 Total: -31.78 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.73 Total: 48.76 kcal Total: -79.71 2.54 -77.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733764320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.452 kcal (2) G-P(sol) polarization free energy of solvation -79.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds