Wall clock time and date at job start Wed Apr 1 2020 05:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46728 * 2 1 4 4 O 1.42897 * 109.47107 * 240.00266 * 2 1 3 5 5 C 1.42908 * 114.00249 * 89.99659 * 4 2 1 6 6 C 1.50699 * 109.47011 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78838 * 269.71653 * 6 5 4 8 8 C 1.38203 * 119.16046 * 179.75789 * 7 6 5 9 9 N 1.31873 * 120.76220 * 0.53404 * 8 7 6 10 10 C 1.31869 * 121.72591 * 359.74184 * 9 8 7 11 11 C 1.38197 * 120.76660 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47426 * 119.99987 * 2 1 3 13 13 O 1.21281 * 119.99899 * 115.00022 * 12 2 1 14 14 N 1.34777 * 119.99666 * 294.99936 * 12 2 1 15 15 C 1.46507 * 119.99450 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.16295 * 35.66811 * 15 14 12 17 17 C 1.50130 * 109.20405 * 155.00216 * 15 14 12 18 18 C 1.52523 * 105.41235 * 218.02702 * 17 15 14 19 19 C 1.46233 * 114.27989 * 270.59215 * 18 17 15 20 20 N 1.50176 * 107.53047 * 58.41315 * 19 18 17 21 21 C 1.36935 * 120.54073 * 109.61516 * 20 19 18 22 22 H 1.07995 * 119.99669 * 211.15963 * 21 20 19 23 23 C 1.38817 * 119.99982 * 31.15442 * 21 20 19 24 24 N 1.31617 * 119.99618 * 19.51858 * 23 21 20 25 25 Si 1.86795 * 119.99788 * 199.51873 * 23 21 20 26 26 H 1.48491 * 109.47185 * 94.74407 * 25 23 21 27 27 H 1.48508 * 109.46856 * 214.74177 * 25 23 21 28 28 H 1.48498 * 109.47249 * 334.74073 * 25 23 21 29 29 C 1.43439 * 118.92092 * 289.58614 * 20 19 18 30 30 C 1.54835 * 109.21005 * 276.32705 * 15 14 12 31 31 H 1.09004 * 109.46974 * 299.99756 * 1 2 3 32 32 H 1.08999 * 109.47498 * 59.99718 * 1 2 3 33 33 H 1.08999 * 109.46879 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46813 * 300.00423 * 5 4 2 35 35 H 1.09002 * 109.46746 * 60.00167 * 5 4 2 36 36 H 1.08005 * 120.41501 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.61811 * 180.29579 * 8 7 6 38 38 H 1.07998 * 119.61205 * 180.02562 * 10 9 8 39 39 H 1.08000 * 120.42234 * 180.02562 * 11 10 9 40 40 H 0.97000 * 120.00768 * 0.02562 * 14 12 2 41 41 H 1.09002 * 110.25008 * 99.05829 * 17 15 14 42 42 H 1.08997 * 110.24956 * 336.99722 * 17 15 14 43 43 H 1.09004 * 108.52684 * 31.83630 * 18 17 15 44 44 H 1.09001 * 108.52536 * 149.50947 * 18 17 15 45 45 H 1.09005 * 109.84932 * 177.91809 * 19 18 17 46 46 H 1.08997 * 109.85017 * 298.90615 * 19 18 17 47 47 H 0.97003 * 119.99447 * 179.97438 * 24 23 21 48 48 H 1.08997 * 108.15415 * 213.28561 * 29 20 19 49 49 H 1.09002 * 108.16151 * 329.85254 * 29 20 19 50 50 H 1.09005 * 109.36019 * 80.58660 * 30 15 14 51 51 H 1.09008 * 109.25106 * 320.92482 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2942 6 6 2.7002 -0.6283 -3.4614 7 6 4.0590 -0.8074 -3.6710 8 6 4.4804 -1.5621 -4.7494 9 7 3.6074 -2.0994 -5.5789 10 6 2.3082 -1.9453 -5.4137 11 6 1.8126 -1.2086 -4.3547 12 6 2.0324 -0.7104 1.2304 13 8 2.6531 -1.7466 1.1214 14 7 1.7920 -0.1941 2.4520 15 6 2.2800 -0.8851 3.6482 16 1 3.2453 -1.3413 3.4291 17 6 2.4448 0.1098 4.7604 18 6 3.7076 -0.3167 5.5019 19 6 3.4752 -1.2696 6.5864 20 7 2.8147 -2.4800 5.9914 21 6 3.4949 -3.6640 5.8884 22 1 3.2782 -4.3423 5.0765 23 6 4.4629 -3.9922 6.8277 24 7 4.4730 -3.3927 7.9994 25 14 5.7511 -5.2848 6.4286 26 1 6.9752 -4.6209 5.9130 27 1 6.0829 -6.0490 7.6580 28 1 5.2192 -6.2120 5.3978 29 6 1.4594 -2.3758 5.5331 30 6 1.2718 -1.9914 4.0444 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.2537 0.6548 -2.5588 35 1 2.9319 0.9514 -2.0451 36 1 4.7790 -0.3663 -2.9974 37 1 5.5370 -1.7104 -4.9168 38 1 1.6235 -2.4008 -6.1138 39 1 0.7475 -1.0863 -4.2245 40 1 1.2953 0.6345 2.5392 41 1 1.5846 0.0742 5.4289 42 1 2.5670 1.1136 4.3536 43 1 4.3941 -0.7681 4.7855 44 1 4.1804 0.5719 5.9201 45 1 4.4249 -1.5522 7.0407 46 1 2.8230 -0.8238 7.3374 47 1 5.1492 -3.6224 8.6558 48 1 0.9696 -3.3349 5.7008 49 1 0.9508 -1.6295 6.1435 50 1 1.4361 -2.8702 3.4208 51 1 0.2568 -1.6243 3.8912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733764321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:26 Heat of formation + Delta-G solvation = -18.390648 kcal Electronic energy + Delta-G solvation = -30655.569418 eV Core-core repulsion = 26555.925159 eV Total energy + Delta-G solvation = -4099.644258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.52978 -40.00465 -38.39603 -37.34460 -34.69227 -33.78384 -32.67473 -31.67276 -31.51683 -31.30459 -29.68848 -27.23635 -26.22997 -24.73268 -23.95917 -23.77341 -22.81181 -22.31350 -20.56235 -19.95390 -19.21516 -17.70538 -17.33506 -16.82915 -16.60115 -16.52357 -15.91460 -15.56248 -15.46199 -15.03963 -14.73591 -14.43439 -14.11116 -13.99714 -13.87799 -13.83584 -13.37817 -13.26966 -13.04884 -12.73191 -12.55641 -12.42867 -12.31639 -11.94224 -11.88312 -11.61007 -11.50895 -11.16224 -10.88710 -10.75463 -10.53555 -10.36213 -10.23513 -10.13420 -10.06902 -9.79604 -9.78597 -9.65569 -9.45027 -9.44397 -9.34443 -8.72174 -8.39503 -6.60565 -5.76688 -3.21615 0.80848 0.84109 2.74268 2.85545 3.42484 3.48570 3.49671 3.53429 3.81492 4.17051 4.32487 4.33576 4.54753 4.55451 4.68246 4.69592 4.77617 4.81402 4.93202 4.99555 5.17683 5.24756 5.29953 5.34542 5.36508 5.45568 5.47033 5.57675 5.62682 5.65848 5.78856 5.91481 5.97270 6.07230 6.16351 6.25592 6.37220 6.38659 6.54580 6.58400 6.68870 6.75030 6.88165 6.92196 6.99441 7.03465 7.35806 7.65956 7.67027 7.69510 7.88219 8.41548 8.53742 9.20741 9.89399 10.44757 11.30682 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.002332 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.501832 B =12003.369755 C =13429.917099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 H 0.084 0.916 4 O -0.347 6.347 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.149 4.149 8 C 0.097 3.903 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.152 4.152 12 C 0.507 3.493 13 O -0.512 6.512 14 N -0.726 5.726 15 C 0.156 3.844 16 H 0.093 0.907 17 C -0.119 4.119 18 C -0.131 4.131 19 C 0.146 3.854 20 N -0.584 5.584 21 C -0.249 4.249 22 H 0.064 0.936 23 C 0.005 3.995 24 N -0.898 5.898 25 Si 0.897 3.103 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.277 1.277 29 C 0.160 3.840 30 C -0.151 4.151 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.392 0.608 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.101 0.899 46 H 0.022 0.978 47 H 0.253 0.747 48 H 0.039 0.961 49 H 0.027 0.973 50 H 0.056 0.944 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 14.622 -20.406 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 H 0.102 0.898 4 O -0.265 6.265 5 C 0.022 3.978 6 C -0.052 4.052 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.172 4.172 12 C 0.291 3.709 13 O -0.385 6.385 14 N -0.379 5.379 15 C 0.054 3.946 16 H 0.111 0.889 17 C -0.157 4.157 18 C -0.171 4.171 19 C 0.023 3.977 20 N -0.305 5.305 21 C -0.379 4.379 22 H 0.081 0.919 23 C -0.194 4.194 24 N -0.542 5.542 25 Si 0.727 3.273 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.202 1.202 29 C 0.031 3.969 30 C -0.193 4.193 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.225 0.775 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.119 0.881 46 H 0.041 0.959 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.045 0.955 50 H 0.075 0.925 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.260 13.097 -21.027 25.814 hybrid contribution 0.046 0.544 0.534 0.764 sum -7.214 13.640 -20.493 25.652 Atomic orbital electron populations 1.22224 0.93527 1.04046 1.02925 1.21980 0.95115 0.96239 0.85834 0.89789 1.88160 1.86579 1.33380 1.18409 1.21411 0.99996 0.91682 0.84745 1.19960 0.93712 0.96845 0.94699 1.22131 0.95894 0.99817 0.99012 1.22799 0.99776 0.92938 0.90474 1.67673 1.03371 1.19512 1.28647 1.22773 0.92007 0.95338 0.96091 1.22070 1.00955 0.98323 0.95815 1.20238 0.80483 0.85916 0.84282 1.90777 1.38797 1.22711 1.86237 1.46447 1.58035 1.27389 1.06048 1.21237 0.99156 0.92358 0.81880 0.88947 1.21336 1.00330 0.96791 0.97278 1.20999 0.96183 0.99227 1.00652 1.20343 1.00394 0.85038 0.91974 1.43937 1.08927 1.07618 1.69978 1.19149 1.16439 0.96337 1.05930 0.91865 1.25006 1.01411 0.98538 0.94429 1.70021 1.34963 1.45036 1.04171 0.86344 0.82259 0.81371 0.77321 1.21471 1.21848 1.20247 1.20264 0.87696 0.98480 0.90499 1.23329 0.96635 0.97861 1.01495 0.90773 0.91446 0.90896 0.91776 0.91768 0.84490 0.82457 0.82563 0.84626 0.77473 0.90935 0.92463 0.92243 0.93891 0.88106 0.95938 0.93736 0.94254 0.95500 0.92469 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.48 37.16 0.35 -0.98 16 2 C 0.07 0.73 3.13 -27.88 -0.09 0.64 16 3 H 0.08 0.62 7.79 -51.92 -0.40 0.21 16 4 O -0.35 -4.33 9.51 -55.09 -0.52 -4.85 16 5 C 0.10 0.83 5.92 36.01 0.21 1.05 16 6 C -0.04 -0.42 5.55 -104.32 -0.58 -1.00 16 7 C -0.15 -1.42 9.82 -39.44 -0.39 -1.81 16 8 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 9 N -0.48 -5.29 10.36 -13.25 -0.14 -5.42 16 10 C 0.09 0.86 11.18 -17.55 -0.20 0.67 16 11 C -0.15 -1.32 9.82 -39.44 -0.39 -1.70 16 12 C 0.51 7.57 7.13 -10.99 -0.08 7.49 16 13 O -0.51 -10.62 16.17 -14.30 -0.23 -10.85 16 14 N -0.73 -9.49 4.93 -54.25 -0.27 -9.76 16 15 C 0.16 2.63 2.22 -68.39 -0.15 2.48 16 16 H 0.09 1.96 6.26 -51.93 -0.33 1.64 16 17 C -0.12 -1.82 5.34 -28.40 -0.15 -1.97 16 18 C -0.13 -2.44 5.20 -30.19 -0.16 -2.60 16 19 C 0.15 3.34 5.37 -5.20 -0.03 3.31 16 20 N -0.58 -14.39 2.56 -175.07 -0.45 -14.84 16 21 C -0.25 -6.93 9.54 -15.06 -0.14 -7.07 16 22 H 0.06 1.81 7.90 -52.49 -0.41 1.39 16 23 C 0.00 0.13 4.93 -17.43 -0.09 0.05 16 24 N -0.90 -25.92 11.25 55.49 0.62 -25.30 16 25 Si 0.90 22.30 29.60 -169.99 -5.03 17.26 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.16 3.37 5.17 -4.66 -0.02 3.35 16 30 C -0.15 -2.75 5.98 -24.76 -0.15 -2.90 16 31 H 0.07 0.46 7.92 -51.93 -0.41 0.04 16 32 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.39 7.83 -51.93 -0.41 -0.02 16 35 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 36 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.39 3.59 8.26 -40.82 -0.34 3.25 16 41 H 0.07 1.10 6.29 -51.93 -0.33 0.77 16 42 H 0.06 0.71 7.85 -51.93 -0.41 0.30 16 43 H 0.06 1.22 6.93 -51.93 -0.36 0.86 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.10 2.63 5.65 -51.93 -0.29 2.34 16 46 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.04 0.87 8.00 -51.93 -0.42 0.46 16 49 H 0.03 0.52 6.89 -51.93 -0.36 0.17 16 50 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.05 0.78 8.12 -51.92 -0.42 0.36 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -35.31 407.37 -10.34 -45.64 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.23 Total: 2.23 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.24 Total: -0.26 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.23 Total: -55.32 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.76 Total: -15.70 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.31 -10.34 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733764321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.252 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds