Wall clock time and date at job start Wed Apr 1 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46728 * 2 1 4 4 O 1.42897 * 109.47107 * 240.00266 * 2 1 3 5 5 C 1.42908 * 114.00249 * 89.99659 * 4 2 1 6 6 C 1.50699 * 109.47011 * 180.02562 * 5 4 2 7 7 C 1.38654 * 120.78838 * 269.71653 * 6 5 4 8 8 C 1.38203 * 119.16046 * 179.75789 * 7 6 5 9 9 N 1.31873 * 120.76220 * 0.53404 * 8 7 6 10 10 C 1.31869 * 121.72591 * 359.74184 * 9 8 7 11 11 C 1.38197 * 120.76660 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47426 * 119.99987 * 2 1 3 13 13 O 1.21281 * 119.99899 * 115.00022 * 12 2 1 14 14 N 1.34777 * 119.99666 * 294.99936 * 12 2 1 15 15 C 1.46507 * 119.99450 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.16295 * 35.66811 * 15 14 12 17 17 C 1.50130 * 109.20405 * 155.00216 * 15 14 12 18 18 C 1.52523 * 105.41235 * 218.02702 * 17 15 14 19 19 C 1.46233 * 114.27989 * 270.59215 * 18 17 15 20 20 N 1.50176 * 107.53047 * 58.41315 * 19 18 17 21 21 C 1.36935 * 120.54073 * 109.61516 * 20 19 18 22 22 H 1.07995 * 119.99669 * 211.15963 * 21 20 19 23 23 C 1.38817 * 119.99982 * 31.15442 * 21 20 19 24 24 N 1.31617 * 119.99618 * 19.51858 * 23 21 20 25 25 Si 1.86795 * 119.99788 * 199.51873 * 23 21 20 26 26 H 1.48491 * 109.47185 * 94.74407 * 25 23 21 27 27 H 1.48508 * 109.46856 * 214.74177 * 25 23 21 28 28 H 1.48498 * 109.47249 * 334.74073 * 25 23 21 29 29 C 1.43439 * 118.92092 * 289.58614 * 20 19 18 30 30 C 1.54835 * 109.21005 * 276.32705 * 15 14 12 31 31 H 1.09004 * 109.46974 * 299.99756 * 1 2 3 32 32 H 1.08999 * 109.47498 * 59.99718 * 1 2 3 33 33 H 1.08999 * 109.46879 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46813 * 300.00423 * 5 4 2 35 35 H 1.09002 * 109.46746 * 60.00167 * 5 4 2 36 36 H 1.08005 * 120.41501 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.61811 * 180.29579 * 8 7 6 38 38 H 1.07998 * 119.61205 * 180.02562 * 10 9 8 39 39 H 1.08000 * 120.42234 * 180.02562 * 11 10 9 40 40 H 0.97000 * 120.00768 * 0.02562 * 14 12 2 41 41 H 1.09002 * 110.25008 * 99.05829 * 17 15 14 42 42 H 1.08997 * 110.24956 * 336.99722 * 17 15 14 43 43 H 1.09004 * 108.52684 * 31.83630 * 18 17 15 44 44 H 1.09001 * 108.52536 * 149.50947 * 18 17 15 45 45 H 1.09005 * 109.84932 * 177.91809 * 19 18 17 46 46 H 1.08997 * 109.85017 * 298.90615 * 19 18 17 47 47 H 0.97003 * 119.99447 * 179.97438 * 24 23 21 48 48 H 1.08997 * 108.15415 * 213.28561 * 29 20 19 49 49 H 1.09002 * 108.16151 * 329.85254 * 29 20 19 50 50 H 1.09005 * 109.36019 * 80.58660 * 30 15 14 51 51 H 1.09008 * 109.25106 * 320.92482 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2000 0.1830 -2.2942 6 6 2.7002 -0.6283 -3.4614 7 6 4.0590 -0.8074 -3.6710 8 6 4.4804 -1.5621 -4.7494 9 7 3.6074 -2.0994 -5.5789 10 6 2.3082 -1.9453 -5.4137 11 6 1.8126 -1.2086 -4.3547 12 6 2.0324 -0.7104 1.2304 13 8 2.6531 -1.7466 1.1214 14 7 1.7920 -0.1941 2.4520 15 6 2.2800 -0.8851 3.6482 16 1 3.2453 -1.3413 3.4291 17 6 2.4448 0.1098 4.7604 18 6 3.7076 -0.3167 5.5019 19 6 3.4752 -1.2696 6.5864 20 7 2.8147 -2.4800 5.9914 21 6 3.4949 -3.6640 5.8884 22 1 3.2782 -4.3423 5.0765 23 6 4.4629 -3.9922 6.8277 24 7 4.4730 -3.3927 7.9994 25 14 5.7511 -5.2848 6.4286 26 1 6.9752 -4.6209 5.9130 27 1 6.0829 -6.0490 7.6580 28 1 5.2192 -6.2120 5.3978 29 6 1.4594 -2.3758 5.5331 30 6 1.2718 -1.9914 4.0444 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.2537 0.6548 -2.5588 35 1 2.9319 0.9514 -2.0451 36 1 4.7790 -0.3663 -2.9974 37 1 5.5370 -1.7104 -4.9168 38 1 1.6235 -2.4008 -6.1138 39 1 0.7475 -1.0863 -4.2245 40 1 1.2953 0.6345 2.5392 41 1 1.5846 0.0742 5.4289 42 1 2.5670 1.1136 4.3536 43 1 4.3941 -0.7681 4.7855 44 1 4.1804 0.5719 5.9201 45 1 4.4249 -1.5522 7.0407 46 1 2.8230 -0.8238 7.3374 47 1 5.1492 -3.6224 8.6558 48 1 0.9696 -3.3349 5.7008 49 1 0.9508 -1.6295 6.1435 50 1 1.4361 -2.8702 3.4208 51 1 0.2568 -1.6243 3.8912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733764321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:25 Heat of formation + Delta-G solvation = -41.682826 kcal Electronic energy + Delta-G solvation = -30656.579442 eV Core-core repulsion = 26555.925159 eV Total energy + Delta-G solvation = -4100.654283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.33826 -41.03540 -39.62843 -38.53028 -36.27271 -34.59832 -34.18920 -33.29403 -32.54384 -32.17372 -31.07918 -28.00939 -27.88214 -25.95374 -25.56127 -24.45105 -24.20545 -22.98413 -22.02421 -21.21348 -20.84817 -18.57962 -18.57049 -18.10959 -17.51930 -17.41352 -17.05560 -16.73439 -16.57856 -16.36788 -15.96197 -15.89620 -15.50799 -15.12103 -14.97680 -14.79693 -14.56549 -14.39926 -14.17581 -14.01345 -13.64516 -13.49909 -13.34426 -13.19691 -13.15577 -12.96679 -12.76842 -12.58920 -12.51036 -12.28954 -12.18745 -12.03670 -11.80298 -11.57893 -11.36518 -11.17784 -11.05644 -10.77103 -10.56250 -10.49384 -10.39474 -10.11677 -10.00276 -8.62254 -7.90271 -5.36764 0.11641 0.17087 1.40007 1.42784 1.51772 1.62970 1.92909 2.48244 2.70129 3.09563 3.20065 3.55326 3.60943 3.62716 3.75040 3.77781 3.92483 3.95298 4.07169 4.09215 4.10817 4.18105 4.26998 4.37825 4.42214 4.43724 4.50698 4.65235 4.67465 4.72723 4.79306 4.83326 4.85641 4.90278 4.96459 4.99404 5.09092 5.21567 5.24405 5.26235 5.32184 5.36669 5.44799 5.62622 5.64352 5.70132 5.72962 5.80791 6.03442 6.43879 6.66561 6.97372 7.12590 7.35533 7.87714 8.37586 9.13706 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.002332 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.501832 B =12003.369755 C =13429.917099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 H 0.125 0.875 4 O -0.386 6.386 5 C 0.096 3.904 6 C -0.061 4.061 7 C -0.162 4.162 8 C 0.081 3.919 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.153 4.153 12 C 0.500 3.500 13 O -0.582 6.582 14 N -0.706 5.706 15 C 0.166 3.834 16 H 0.042 0.958 17 C -0.104 4.104 18 C -0.126 4.126 19 C 0.151 3.849 20 N -0.601 5.601 21 C -0.259 4.259 22 H 0.043 0.957 23 C -0.039 4.039 24 N -0.920 5.920 25 Si 0.951 3.049 26 H -0.287 1.287 27 H -0.287 1.287 28 H -0.279 1.279 29 C 0.157 3.843 30 C -0.137 4.137 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.180 0.820 39 H 0.161 0.839 40 H 0.418 0.582 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.030 0.970 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.252 0.748 48 H 0.018 0.982 49 H 0.052 0.948 50 H 0.018 0.982 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.171 17.883 -21.366 29.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 H 0.143 0.857 4 O -0.305 6.305 5 C 0.021 3.979 6 C -0.069 4.069 7 C -0.182 4.182 8 C -0.075 4.075 9 N -0.221 5.221 10 C -0.074 4.074 11 C -0.173 4.173 12 C 0.286 3.714 13 O -0.461 6.461 14 N -0.360 5.360 15 C 0.062 3.938 16 H 0.060 0.940 17 C -0.142 4.142 18 C -0.165 4.165 19 C 0.027 3.973 20 N -0.323 5.323 21 C -0.389 4.389 22 H 0.061 0.939 23 C -0.235 4.235 24 N -0.565 5.565 25 Si 0.780 3.220 26 H -0.214 1.214 27 H -0.213 1.213 28 H -0.204 1.204 29 C 0.028 3.972 30 C -0.179 4.179 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.163 0.837 37 H 0.190 0.810 38 H 0.197 0.803 39 H 0.178 0.822 40 H 0.256 0.744 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.049 0.951 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.061 0.939 48 H 0.036 0.964 49 H 0.070 0.930 50 H 0.037 0.963 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.286 16.425 -21.998 28.981 hybrid contribution 0.625 -0.481 0.808 1.129 sum -8.661 15.945 -21.189 27.897 Atomic orbital electron populations 1.22243 0.91186 1.03203 1.05524 1.22072 0.96567 0.96819 0.82961 0.85746 1.88116 1.87073 1.35581 1.19757 1.21621 1.01995 0.91176 0.83125 1.20309 0.93880 0.97248 0.95462 1.22345 0.96590 1.00045 0.99181 1.23121 1.00595 0.93101 0.90648 1.67685 1.04417 1.20468 1.29546 1.23246 0.91874 0.95413 0.96839 1.22374 1.02163 0.97522 0.95199 1.21277 0.79011 0.85140 0.85956 1.90755 1.41996 1.26043 1.87284 1.46137 1.57518 1.27802 1.04582 1.20799 0.96386 0.92653 0.83971 0.93999 1.21262 0.98671 0.98138 0.96128 1.20830 0.97830 0.98955 0.98902 1.20258 0.98490 0.85195 0.93322 1.44140 1.10301 1.07364 1.70449 1.19202 1.17196 0.97390 1.05136 0.93899 1.25569 1.02907 1.00594 0.94441 1.70117 1.35468 1.46252 1.04656 0.85504 0.80068 0.79409 0.77025 1.21379 1.21272 1.20426 1.20391 0.85959 0.98297 0.92522 1.23133 0.99113 0.97224 0.98454 0.88474 0.88556 0.93441 0.88679 0.90297 0.83654 0.80991 0.80307 0.82188 0.74390 0.89739 0.88143 0.95111 0.91133 0.91801 0.95397 0.93894 0.96398 0.93014 0.96281 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 71.98 0.68 -1.22 16 2 C 0.08 1.35 3.13 29.85 0.09 1.44 16 3 H 0.13 1.18 7.79 -2.38 -0.02 1.16 16 4 O -0.39 -8.93 9.51 -129.99 -1.24 -10.17 16 5 C 0.10 1.37 5.92 71.24 0.42 1.79 16 6 C -0.06 -1.09 5.55 -19.67 -0.11 -1.20 16 7 C -0.16 -3.05 9.82 22.36 0.22 -2.83 16 8 C 0.08 1.60 11.18 84.68 0.95 2.55 16 9 N -0.51 -11.20 10.36 -195.85 -2.03 -13.23 16 10 C 0.08 1.44 11.18 84.68 0.95 2.39 16 11 C -0.15 -2.42 9.82 22.36 0.22 -2.20 16 12 C 0.50 14.31 7.13 87.66 0.62 14.93 16 13 O -0.58 -25.03 16.17 15.96 0.26 -24.78 16 14 N -0.71 -16.56 4.93 -443.94 -2.19 -18.75 16 15 C 0.17 5.43 2.22 44.69 0.10 5.52 16 16 H 0.04 1.84 6.26 -2.39 -0.01 1.83 16 17 C -0.10 -2.84 5.34 29.51 0.16 -2.69 16 18 C -0.13 -4.56 5.20 28.35 0.15 -4.41 16 19 C 0.15 6.92 5.37 83.58 0.45 7.37 16 20 N -0.60 -30.37 2.56 -707.81 -1.81 -32.18 16 21 C -0.26 -15.02 9.54 84.04 0.80 -14.22 16 22 H 0.04 2.61 7.90 -2.91 -0.02 2.59 16 23 C -0.04 -2.24 4.93 84.86 0.42 -1.82 16 24 N -0.92 -54.44 11.25 21.65 0.24 -54.20 16 25 Si 0.95 47.33 29.60 68.60 2.03 49.36 16 26 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 29 C 0.16 6.61 5.17 87.60 0.45 7.06 16 30 C -0.14 -4.96 5.98 31.87 0.19 -4.77 16 31 H 0.10 0.67 7.92 -2.39 -0.02 0.65 16 32 H 0.10 0.60 7.87 -2.39 -0.02 0.58 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.73 7.83 -2.39 -0.02 0.71 16 35 H 0.08 0.86 8.04 -2.39 -0.02 0.84 16 36 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 38 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.42 5.53 8.26 -92.71 -0.77 4.76 16 41 H 0.08 2.18 6.29 -2.39 -0.01 2.17 16 42 H 0.10 1.94 7.85 -2.39 -0.02 1.92 16 43 H 0.03 1.28 6.93 -2.38 -0.02 1.27 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.06 3.42 5.65 -2.38 -0.01 3.41 16 46 H 0.03 1.23 8.12 -2.39 -0.02 1.21 16 47 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 48 H 0.02 0.81 8.00 -2.39 -0.02 0.79 16 49 H 0.05 1.92 6.89 -2.39 -0.02 1.90 16 50 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 51 H 0.09 2.47 8.12 -2.38 -0.02 2.45 16 Total: -1.00 -84.21 407.37 2.19 -82.02 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.16 Total: 14.20 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 6.76 Total: 7.72 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.79 Total: -118.35 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.98 Total: -34.95 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -84.21 2.19 -82.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733764321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.335 kcal (2) G-P(sol) polarization free energy of solvation -84.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds