Wall clock time and date at job start Wed Apr 1 2020 04:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46985 * 2 1 4 4 O 1.42901 * 109.46971 * 119.99484 * 2 1 3 5 5 C 1.35911 * 117.00008 * 275.99270 * 4 2 1 6 6 C 1.39141 * 120.47602 * 357.83656 * 5 4 2 7 7 C 1.38535 * 118.37488 * 180.02562 * 6 5 4 8 8 C 1.38252 * 119.22104 * 0.26244 * 7 6 5 9 9 N 1.31844 * 120.88761 * 359.46816 * 8 7 6 10 10 C 1.31846 * 121.78189 * 0.54339 * 9 8 7 11 11 C 1.50700 * 109.47418 * 239.99934 * 2 1 3 12 12 O 1.21280 * 119.99515 * 245.00290 * 11 2 1 13 13 N 1.34777 * 120.00057 * 64.99556 * 11 2 1 14 14 C 1.46491 * 119.99742 * 184.79570 * 13 11 2 15 15 C 1.53003 * 109.47217 * 299.21044 * 14 13 11 16 16 N 1.46502 * 109.46681 * 305.23785 * 15 14 13 17 17 C 1.36943 * 119.99357 * 185.09369 * 16 15 14 18 18 H 1.07997 * 120.00388 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99555 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00017 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46952 * 89.99631 * 21 19 17 23 23 H 1.48494 * 109.47123 * 209.99727 * 21 19 17 24 24 H 1.48503 * 109.47054 * 329.99859 * 21 19 17 25 25 C 1.53002 * 109.47100 * 179.21187 * 14 13 11 26 26 C 1.53005 * 109.46793 * 299.99663 * 25 14 13 27 27 C 1.52995 * 109.47283 * 299.99562 * 26 25 14 28 28 C 1.53002 * 109.46848 * 60.00472 * 27 26 25 29 29 C 1.53003 * 109.46968 * 299.99483 * 28 27 26 30 30 H 1.09002 * 109.46777 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47133 * 300.00263 * 1 2 3 32 32 H 1.08992 * 109.46979 * 60.00532 * 1 2 3 33 33 H 1.08002 * 120.80970 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.38744 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.55378 * 179.74738 * 8 7 6 36 36 H 1.07990 * 119.66184 * 179.74868 * 10 9 8 37 37 H 0.96999 * 119.99737 * 4.79115 * 13 11 2 38 38 H 1.08999 * 109.47074 * 65.23756 * 15 14 13 39 39 H 1.09000 * 109.47256 * 185.23921 * 15 14 13 40 40 H 0.96992 * 120.00396 * 5.09743 * 16 15 14 41 41 H 0.97000 * 119.99697 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.47278 * 59.99729 * 25 14 13 43 43 H 1.09000 * 109.47084 * 180.02562 * 25 14 13 44 44 H 1.09002 * 109.46784 * 179.97438 * 26 25 14 45 45 H 1.09000 * 109.46977 * 60.00337 * 26 25 14 46 46 H 1.08996 * 109.47281 * 300.00223 * 27 26 25 47 47 H 1.09005 * 109.46876 * 179.97438 * 27 26 25 48 48 H 1.09004 * 109.47278 * 179.97438 * 28 27 26 49 49 H 1.08996 * 109.47382 * 59.99814 * 28 27 26 50 50 H 1.08996 * 109.47339 * 300.00357 * 29 28 27 51 51 H 1.08998 * 109.47118 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0928 0.0576 2.3093 6 6 1.7707 1.4112 2.3069 7 6 1.8748 2.1149 3.4956 8 6 2.2972 1.4559 4.6352 9 7 2.5900 0.1707 4.6046 10 6 2.5041 -0.5348 3.4941 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1213 13 7 1.7920 -0.1942 -2.4520 14 6 2.1876 -0.9363 -3.6515 15 6 3.7035 -1.1436 -3.6462 16 7 4.3730 0.1522 -3.5081 17 6 5.7382 0.2288 -3.5834 18 1 6.3213 -0.6659 -3.7441 19 6 6.3726 1.4566 -3.4521 20 7 5.6620 2.5469 -3.2557 21 14 8.2349 1.5612 -3.5540 22 1 8.6417 1.7816 -4.9651 23 1 8.7136 2.6915 -2.7185 24 1 8.8297 0.2935 -3.0596 25 6 1.7856 -0.1440 -4.8971 26 6 0.2696 0.0632 -4.9024 27 6 -0.4310 -1.2969 -4.9151 28 6 -0.0290 -2.0892 -3.6695 29 6 1.4869 -2.2965 -3.6642 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.4474 1.9013 1.4003 34 1 1.6334 3.1670 3.5307 35 1 2.3843 2.0002 5.5640 36 1 2.7562 -1.5848 3.5072 37 1 1.3569 0.6685 -2.5369 38 1 3.9794 -1.7861 -2.8100 39 1 4.0093 -1.6128 -4.5813 40 1 3.8493 0.9557 -3.3634 41 1 6.1053 3.4048 -3.1644 42 1 2.2847 0.8250 -4.8882 43 1 2.0795 -0.6964 -5.7896 44 1 -0.0167 0.6281 -5.7896 45 1 -0.0247 0.6154 -4.0099 46 1 -0.1366 -1.8489 -5.8076 47 1 -1.5110 -1.1492 -4.9184 48 1 -0.5285 -3.0580 -3.6782 49 1 -0.3234 -1.5371 -2.7770 50 1 1.7813 -2.8485 -4.5567 51 1 1.7734 -2.8605 -2.7766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734090469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:23 Heat of formation + Delta-G solvation = -30.823853 kcal Electronic energy + Delta-G solvation = -32237.638971 eV Core-core repulsion = 28137.455569 eV Total energy + Delta-G solvation = -4100.183403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.97826 -40.26629 -38.62317 -37.23728 -34.66269 -33.47702 -32.45064 -32.25470 -30.97605 -30.69296 -30.05709 -29.12817 -25.28699 -25.06585 -23.82635 -23.05595 -23.00051 -22.28678 -20.84742 -20.27356 -18.98741 -18.41767 -17.63236 -17.18030 -16.77933 -16.22714 -15.76938 -15.45042 -15.10512 -14.81143 -14.55394 -14.35527 -14.20398 -13.92383 -13.76429 -13.63144 -13.28434 -13.22205 -13.06905 -12.98548 -12.53864 -12.33831 -12.25116 -12.14682 -12.09762 -11.74453 -11.62296 -11.39006 -11.21657 -10.99460 -10.87421 -10.77976 -10.56453 -10.19711 -10.07687 -9.94013 -9.87718 -9.69519 -9.66277 -9.27171 -8.76658 -8.59090 -8.48461 -6.83881 -5.74856 -3.00223 1.03566 1.14807 2.60262 2.89518 3.45237 3.50908 3.53011 3.64027 3.70673 4.39148 4.48295 4.61857 4.62114 4.64560 4.70380 4.82575 4.85412 4.90203 4.92563 4.99137 5.10937 5.28623 5.30443 5.31939 5.37415 5.55000 5.61509 5.61844 5.62233 5.66721 5.75555 5.78802 5.84015 5.93497 5.95050 6.07659 6.11437 6.21065 6.27885 6.28762 6.30874 6.36537 6.47805 6.55204 6.64003 6.90151 7.10047 7.12596 7.74493 7.80893 7.86385 8.45363 8.53335 9.57006 10.14875 10.50681 11.48632 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007005 B = 0.004416 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3996.091616 B = 6339.397521 C = 9313.556641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.062 3.938 3 H 0.099 0.901 4 O -0.274 6.274 5 C 0.090 3.910 6 C -0.169 4.169 7 C -0.129 4.129 8 C 0.051 3.949 9 N -0.448 5.448 10 C 0.074 3.926 11 C 0.528 3.472 12 O -0.506 6.506 13 N -0.704 5.704 14 C 0.181 3.819 15 C 0.138 3.862 16 N -0.725 5.725 17 C -0.228 4.228 18 H 0.068 0.932 19 C -0.016 4.016 20 N -0.938 5.938 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.282 1.282 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.113 4.113 29 C -0.129 4.129 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.395 0.605 38 H 0.044 0.956 39 H 0.025 0.975 40 H 0.381 0.619 41 H 0.253 0.747 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 -2.206 5.506 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 H 0.116 0.884 4 O -0.185 6.185 5 C 0.041 3.959 6 C -0.196 4.196 7 C -0.149 4.149 8 C -0.106 4.106 9 N -0.157 5.157 10 C -0.085 4.085 11 C 0.312 3.688 12 O -0.380 6.380 13 N -0.357 5.357 14 C 0.095 3.905 15 C 0.010 3.990 16 N -0.369 5.369 17 C -0.360 4.360 18 H 0.086 0.914 19 C -0.211 4.211 20 N -0.588 5.588 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.156 4.156 28 C -0.151 4.151 29 C -0.168 4.168 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.181 0.819 37 H 0.230 0.770 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.214 0.786 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.087 0.913 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.962 -3.664 6.286 18.457 hybrid contribution 0.459 1.694 -0.949 1.995 sum -16.503 -1.970 5.338 17.456 Atomic orbital electron populations 1.22290 0.92797 1.04246 1.03575 1.22315 0.95311 0.97712 0.84529 0.88380 1.86247 1.80271 1.36897 1.15066 1.20264 0.96416 0.91064 0.88148 1.21791 1.04192 0.93500 1.00085 1.21989 0.98863 1.01206 0.92808 1.22637 0.98703 0.90708 0.98569 1.67724 1.12589 1.08127 1.27259 1.22223 0.99865 1.00974 0.85427 1.19615 0.79849 0.85716 0.83641 1.90689 1.37718 1.23615 1.85949 1.45756 1.62150 1.23056 1.04737 1.20590 0.95540 0.91036 0.83299 1.21146 0.88202 0.90568 0.99049 1.42192 1.03904 1.03274 1.87543 1.19249 0.83203 0.93182 1.40335 0.91360 1.24656 0.97648 0.95531 1.03282 1.69638 1.33925 0.97805 1.57441 0.86211 0.85843 0.77021 0.77329 1.21832 1.21899 1.20822 1.21785 0.95054 1.01890 0.96951 1.21558 0.95649 0.96942 1.01499 1.21547 0.99243 0.96367 0.98411 1.21464 0.96113 0.99564 0.97951 1.21895 0.94509 0.96890 1.03466 0.90661 0.91104 0.90141 0.84062 0.84494 0.82631 0.81860 0.77030 0.93809 0.95758 0.78551 0.93773 0.90043 0.90507 0.91983 0.92379 0.92071 0.92582 0.92507 0.92283 0.91260 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.23 37.16 0.34 -1.25 16 2 C 0.06 0.81 2.66 -27.88 -0.07 0.74 16 3 H 0.10 1.23 6.04 -51.93 -0.31 0.91 16 4 O -0.27 -4.21 9.35 -39.32 -0.37 -4.58 16 5 C 0.09 1.23 6.58 -39.07 -0.26 0.98 16 6 C -0.17 -1.97 8.46 -39.14 -0.33 -2.30 16 7 C -0.13 -1.31 10.11 -39.47 -0.40 -1.71 16 8 C 0.05 0.56 11.18 -17.54 -0.20 0.36 16 9 N -0.45 -6.00 10.36 -13.13 -0.14 -6.14 16 10 C 0.07 1.01 11.14 -17.37 -0.19 0.82 16 11 C 0.53 8.62 6.58 -10.99 -0.07 8.55 16 12 O -0.51 -10.33 12.80 -14.30 -0.18 -10.52 16 13 N -0.70 -10.12 3.35 -47.61 -0.16 -10.28 16 14 C 0.18 2.79 0.32 -131.82 -0.04 2.75 16 15 C 0.14 2.89 4.87 -4.04 -0.02 2.87 16 16 N -0.72 -18.06 5.12 -59.90 -0.31 -18.37 16 17 C -0.23 -6.49 9.99 -15.05 -0.15 -6.64 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.94 -27.95 13.06 55.49 0.72 -27.22 16 21 Si 0.90 22.91 29.55 -169.99 -5.02 17.89 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.12 -1.64 4.65 -26.73 -0.12 -1.76 16 26 C -0.12 -1.25 5.75 -26.73 -0.15 -1.40 16 27 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 28 C -0.11 -1.24 5.77 -26.73 -0.15 -1.39 16 29 C -0.13 -1.77 4.51 -26.73 -0.12 -1.90 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.58 7.38 -51.93 -0.38 0.20 16 32 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.14 1.39 5.84 -52.49 -0.31 1.09 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 37 H 0.40 4.77 7.30 -40.82 -0.30 4.48 16 38 H 0.04 1.04 6.24 -51.93 -0.32 0.71 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.38 9.62 6.62 -40.82 -0.27 9.35 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.08 1.32 7.31 -51.93 -0.38 0.94 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.56 6.88 -51.93 -0.36 0.20 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.64 7.60 -51.93 -0.39 0.25 16 50 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.08 1.33 6.28 -51.93 -0.33 1.00 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -34.50 399.15 -9.61 -44.11 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -7.97 Total: 12.26 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.20 Total: -3.17 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.12 Total: -62.00 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.55 Total: -15.10 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.50 -9.61 -44.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734090469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.284 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds