Wall clock time and date at job start Wed Apr 1 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46985 * 2 1 4 4 O 1.42901 * 109.46971 * 119.99484 * 2 1 3 5 5 C 1.35911 * 117.00008 * 275.99270 * 4 2 1 6 6 C 1.39141 * 120.47602 * 357.83656 * 5 4 2 7 7 C 1.38535 * 118.37488 * 180.02562 * 6 5 4 8 8 C 1.38252 * 119.22104 * 0.26244 * 7 6 5 9 9 N 1.31844 * 120.88761 * 359.46816 * 8 7 6 10 10 C 1.31846 * 121.78189 * 0.54339 * 9 8 7 11 11 C 1.50700 * 109.47418 * 239.99934 * 2 1 3 12 12 O 1.21280 * 119.99515 * 245.00290 * 11 2 1 13 13 N 1.34777 * 120.00057 * 64.99556 * 11 2 1 14 14 C 1.46491 * 119.99742 * 184.79570 * 13 11 2 15 15 C 1.53003 * 109.47217 * 299.21044 * 14 13 11 16 16 N 1.46502 * 109.46681 * 305.23785 * 15 14 13 17 17 C 1.36943 * 119.99357 * 185.09369 * 16 15 14 18 18 H 1.07997 * 120.00388 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99555 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00017 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46952 * 89.99631 * 21 19 17 23 23 H 1.48494 * 109.47123 * 209.99727 * 21 19 17 24 24 H 1.48503 * 109.47054 * 329.99859 * 21 19 17 25 25 C 1.53002 * 109.47100 * 179.21187 * 14 13 11 26 26 C 1.53005 * 109.46793 * 299.99663 * 25 14 13 27 27 C 1.52995 * 109.47283 * 299.99562 * 26 25 14 28 28 C 1.53002 * 109.46848 * 60.00472 * 27 26 25 29 29 C 1.53003 * 109.46968 * 299.99483 * 28 27 26 30 30 H 1.09002 * 109.46777 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47133 * 300.00263 * 1 2 3 32 32 H 1.08992 * 109.46979 * 60.00532 * 1 2 3 33 33 H 1.08002 * 120.80970 * 0.02562 * 6 5 4 34 34 H 1.08000 * 120.38744 * 179.97438 * 7 6 5 35 35 H 1.08004 * 119.55378 * 179.74738 * 8 7 6 36 36 H 1.07990 * 119.66184 * 179.74868 * 10 9 8 37 37 H 0.96999 * 119.99737 * 4.79115 * 13 11 2 38 38 H 1.08999 * 109.47074 * 65.23756 * 15 14 13 39 39 H 1.09000 * 109.47256 * 185.23921 * 15 14 13 40 40 H 0.96992 * 120.00396 * 5.09743 * 16 15 14 41 41 H 0.97000 * 119.99697 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.47278 * 59.99729 * 25 14 13 43 43 H 1.09000 * 109.47084 * 180.02562 * 25 14 13 44 44 H 1.09002 * 109.46784 * 179.97438 * 26 25 14 45 45 H 1.09000 * 109.46977 * 60.00337 * 26 25 14 46 46 H 1.08996 * 109.47281 * 300.00223 * 27 26 25 47 47 H 1.09005 * 109.46876 * 179.97438 * 27 26 25 48 48 H 1.09004 * 109.47278 * 179.97438 * 28 27 26 49 49 H 1.08996 * 109.47382 * 59.99814 * 28 27 26 50 50 H 1.08996 * 109.47339 * 300.00357 * 29 28 27 51 51 H 1.08998 * 109.47118 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0928 0.0576 2.3093 6 6 1.7707 1.4112 2.3069 7 6 1.8748 2.1149 3.4956 8 6 2.2972 1.4559 4.6352 9 7 2.5900 0.1707 4.6046 10 6 2.5041 -0.5348 3.4941 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1213 13 7 1.7920 -0.1942 -2.4520 14 6 2.1876 -0.9363 -3.6515 15 6 3.7035 -1.1436 -3.6462 16 7 4.3730 0.1522 -3.5081 17 6 5.7382 0.2288 -3.5834 18 1 6.3213 -0.6659 -3.7441 19 6 6.3726 1.4566 -3.4521 20 7 5.6620 2.5469 -3.2557 21 14 8.2349 1.5612 -3.5540 22 1 8.6417 1.7816 -4.9651 23 1 8.7136 2.6915 -2.7185 24 1 8.8297 0.2935 -3.0596 25 6 1.7856 -0.1440 -4.8971 26 6 0.2696 0.0632 -4.9024 27 6 -0.4310 -1.2969 -4.9151 28 6 -0.0290 -2.0892 -3.6695 29 6 1.4869 -2.2965 -3.6642 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.4474 1.9013 1.4003 34 1 1.6334 3.1670 3.5307 35 1 2.3843 2.0002 5.5640 36 1 2.7562 -1.5848 3.5072 37 1 1.3569 0.6685 -2.5369 38 1 3.9794 -1.7861 -2.8100 39 1 4.0093 -1.6128 -4.5813 40 1 3.8493 0.9557 -3.3634 41 1 6.1053 3.4048 -3.1644 42 1 2.2847 0.8250 -4.8882 43 1 2.0795 -0.6964 -5.7896 44 1 -0.0167 0.6281 -5.7896 45 1 -0.0247 0.6154 -4.0099 46 1 -0.1366 -1.8489 -5.8076 47 1 -1.5110 -1.1492 -4.9184 48 1 -0.5285 -3.0580 -3.6782 49 1 -0.3234 -1.5371 -2.7770 50 1 1.7813 -2.8485 -4.5567 51 1 1.7734 -2.8605 -2.7766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734090469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:22 Heat of formation + Delta-G solvation = -52.854119 kcal Electronic energy + Delta-G solvation = -32238.594275 eV Core-core repulsion = 28137.455569 eV Total energy + Delta-G solvation = -4101.138707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.06757 -41.37924 -39.66613 -38.42506 -36.40821 -34.83064 -33.74673 -33.20264 -32.55034 -31.70758 -31.10948 -30.46476 -27.04203 -26.00184 -24.80010 -24.67059 -24.03652 -23.43337 -22.08119 -21.37193 -20.17421 -19.48071 -19.21645 -18.72378 -17.68693 -17.28076 -16.87648 -16.82471 -16.46339 -16.14180 -15.94474 -15.45326 -15.28797 -15.14181 -14.91057 -14.77741 -14.71879 -14.66490 -14.28194 -13.92416 -13.76261 -13.46037 -13.29887 -13.18543 -13.14139 -13.01794 -12.87691 -12.74516 -12.69629 -12.60253 -12.20509 -12.14090 -11.97847 -11.89235 -11.43089 -11.14379 -11.06995 -11.01051 -10.78598 -10.61002 -10.41910 -9.92332 -9.46236 -8.94689 -7.97855 -5.22758 0.13077 0.22841 1.42316 1.43482 1.51374 1.52186 1.65137 2.50804 2.55726 2.78507 3.34541 3.45366 3.56237 3.60884 3.72619 3.76191 3.81363 3.87634 3.89428 3.96075 4.12181 4.14295 4.26545 4.30913 4.47519 4.51450 4.60184 4.60982 4.62949 4.65227 4.75579 4.80155 4.85836 4.88134 5.01383 5.07075 5.09943 5.14189 5.18357 5.22006 5.27718 5.33354 5.39772 5.43363 5.45039 5.50717 5.55461 5.71284 6.14083 6.25858 6.61564 6.94271 7.30049 7.33598 8.07730 8.37332 9.25125 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007005 B = 0.004416 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3996.091616 B = 6339.397521 C = 9313.556641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.063 3.937 3 H 0.106 0.894 4 O -0.304 6.304 5 C 0.069 3.931 6 C -0.172 4.172 7 C -0.121 4.121 8 C 0.047 3.953 9 N -0.470 5.470 10 C 0.051 3.949 11 C 0.520 3.480 12 O -0.556 6.556 13 N -0.692 5.692 14 C 0.188 3.812 15 C 0.139 3.861 16 N -0.727 5.727 17 C -0.244 4.244 18 H 0.060 0.940 19 C -0.066 4.066 20 N -0.961 5.961 21 Si 0.964 3.036 22 H -0.282 1.282 23 H -0.292 1.292 24 H -0.281 1.281 25 C -0.112 4.112 26 C -0.112 4.112 27 C -0.112 4.112 28 C -0.107 4.107 29 C -0.123 4.123 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.160 0.840 34 H 0.175 0.825 35 H 0.188 0.812 36 H 0.159 0.841 37 H 0.409 0.591 38 H 0.012 0.988 39 H 0.020 0.980 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.072 0.928 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.169 -0.313 5.276 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.003 3.997 3 H 0.124 0.876 4 O -0.216 6.216 5 C 0.021 3.979 6 C -0.198 4.198 7 C -0.140 4.140 8 C -0.110 4.110 9 N -0.180 5.180 10 C -0.107 4.107 11 C 0.305 3.695 12 O -0.434 6.434 13 N -0.345 5.345 14 C 0.102 3.898 15 C 0.011 3.989 16 N -0.370 5.370 17 C -0.376 4.376 18 H 0.078 0.922 19 C -0.258 4.258 20 N -0.612 5.612 21 Si 0.794 3.206 22 H -0.209 1.209 23 H -0.219 1.219 24 H -0.207 1.207 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.150 4.150 28 C -0.145 4.145 29 C -0.162 4.162 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.178 0.822 34 H 0.192 0.808 35 H 0.204 0.796 36 H 0.176 0.824 37 H 0.246 0.754 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.212 0.788 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.256 -1.774 6.038 20.259 hybrid contribution 1.226 1.099 -0.831 1.844 sum -18.031 -0.675 5.207 18.779 Atomic orbital electron populations 1.22277 0.89381 1.04494 1.05653 1.22423 0.97759 0.96928 0.82560 0.87644 1.86196 1.81153 1.38254 1.15975 1.20394 0.97789 0.92163 0.87567 1.22101 1.03572 0.92599 1.01542 1.22412 0.97122 1.02778 0.91664 1.23273 0.97413 0.90046 1.00297 1.67733 1.13510 1.09534 1.27185 1.22254 1.01103 1.01264 0.86065 1.20314 0.78973 0.85248 0.84940 1.90672 1.39980 1.25952 1.86759 1.45661 1.61425 1.23380 1.04055 1.20432 0.91831 0.92798 0.84692 1.21195 0.92176 0.88299 0.97224 1.42228 1.03016 1.04518 1.87246 1.19527 0.84922 0.93096 1.40092 0.92162 1.25351 1.01633 0.95284 1.03571 1.69753 1.35234 0.97961 1.58229 0.85277 0.81110 0.76751 0.77469 1.20934 1.21853 1.20675 1.21703 0.97816 0.99891 0.95604 1.21542 0.92483 0.97975 1.02954 1.21523 1.00563 0.95363 0.97523 1.21437 0.93293 1.00692 0.99031 1.21819 0.96899 0.95243 1.02254 0.91337 0.89490 0.87458 0.82242 0.80779 0.79559 0.82381 0.75392 0.97005 0.96218 0.78848 0.93972 0.92584 0.90739 0.90457 0.91019 0.91877 0.90088 0.91329 0.91909 0.90951 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.23 71.98 0.66 -2.00 16 2 C 0.06 1.65 2.66 29.85 0.08 1.73 16 3 H 0.11 2.54 6.04 -2.39 -0.01 2.53 16 4 O -0.30 -9.69 9.35 -73.56 -0.69 -10.38 16 5 C 0.07 1.92 6.58 22.60 0.15 2.07 16 6 C -0.17 -3.73 8.46 22.56 0.19 -3.54 16 7 C -0.12 -2.13 10.11 22.34 0.23 -1.90 16 8 C 0.05 0.94 11.18 84.69 0.95 1.89 16 9 N -0.47 -12.55 10.36 -195.44 -2.02 -14.58 16 10 C 0.05 1.44 11.14 84.80 0.94 2.39 16 11 C 0.52 17.40 6.58 87.66 0.58 17.98 16 12 O -0.56 -24.16 12.80 15.96 0.20 -23.96 16 13 N -0.69 -19.81 3.35 -422.92 -1.42 -21.23 16 14 C 0.19 5.89 0.32 3.61 0.00 5.89 16 15 C 0.14 6.07 4.87 86.38 0.42 6.49 16 16 N -0.73 -37.41 5.12 -343.44 -1.76 -39.17 16 17 C -0.24 -14.24 9.99 84.03 0.84 -13.40 16 18 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 19 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 20 N -0.96 -57.57 13.06 21.65 0.28 -57.29 16 21 Si 0.96 47.51 29.55 68.60 2.03 49.54 16 22 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 25 C -0.11 -3.00 4.65 30.60 0.14 -2.86 16 26 C -0.11 -2.01 5.75 30.59 0.18 -1.84 16 27 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 28 C -0.11 -2.11 5.77 30.60 0.18 -1.94 16 29 C -0.12 -3.41 4.51 30.60 0.14 -3.28 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.19 7.38 -2.39 -0.02 1.17 16 32 H 0.11 1.18 8.09 -2.39 -0.02 1.16 16 33 H 0.16 2.75 5.84 -2.91 -0.02 2.73 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.16 4.36 8.06 -2.92 -0.02 4.33 16 37 H 0.41 9.32 7.30 -92.71 -0.68 8.64 16 38 H 0.01 0.61 6.24 -2.39 -0.01 0.59 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.38 19.57 6.62 -92.71 -0.61 18.95 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.06 1.80 7.31 -2.39 -0.02 1.78 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.11 6.88 -2.39 -0.02 1.09 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.06 1.21 7.60 -2.39 -0.02 1.19 16 50 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.05 1.83 6.28 -2.39 -0.01 1.81 16 Total: -1.00 -78.47 399.15 2.61 -75.86 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.34 Total: 38.50 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.32 Total: 2.69 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -4.92 Total: -132.26 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.48 Total: -34.34 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -78.47 2.61 -75.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734090469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.004 kcal (2) G-P(sol) polarization free energy of solvation -78.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds