Wall clock time and date at job start Wed Apr 1 2020 05:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47465 * 2 1 4 4 O 1.42907 * 109.47158 * 119.99598 * 2 1 3 5 5 C 1.42903 * 113.99992 * 270.00164 * 4 2 1 6 6 C 1.50699 * 109.46835 * 179.97438 * 5 4 2 7 7 C 1.38647 * 120.79011 * 269.71722 * 6 5 4 8 8 C 1.38205 * 119.15944 * 179.75737 * 7 6 5 9 9 N 1.31864 * 120.76527 * 0.53659 * 8 7 6 10 10 C 1.31866 * 121.72748 * 359.73802 * 9 8 7 11 11 C 1.38205 * 120.76408 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47194 * 239.99301 * 2 1 3 13 13 O 1.21280 * 119.99909 * 244.99786 * 12 2 1 14 14 N 1.34773 * 119.99682 * 65.00689 * 12 2 1 15 15 C 1.46501 * 119.99782 * 179.97438 * 14 12 2 16 16 H 1.09002 * 110.78172 * 323.20910 * 15 14 12 17 17 C 1.54325 * 110.72113 * 86.45299 * 15 14 12 18 18 N 1.47018 * 107.40412 * 96.24493 * 17 15 14 19 19 C 1.36936 * 125.64899 * 178.89496 * 18 17 15 20 20 H 1.08004 * 120.00261 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00145 * 359.97438 * 19 18 17 22 22 N 1.31617 * 119.99550 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00112 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47291 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46906 * 120.00302 * 23 21 19 26 26 H 1.48501 * 109.47001 * 239.99832 * 23 21 19 27 27 C 1.47426 * 108.70517 * 358.86539 * 18 17 15 28 28 C 1.54914 * 104.82992 * 24.12623 * 27 18 17 29 29 C 1.53000 * 111.00263 * 81.06932 * 28 27 18 30 30 C 1.52998 * 111.00210 * 204.88127 * 28 27 18 31 31 H 1.08994 * 109.47279 * 300.00519 * 1 2 3 32 32 H 1.09008 * 109.46751 * 60.00307 * 1 2 3 33 33 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46853 * 299.99632 * 5 4 2 35 35 H 1.09002 * 109.47288 * 59.99706 * 5 4 2 36 36 H 1.08003 * 120.41898 * 0.02562 * 7 6 5 37 37 H 1.08007 * 119.61536 * 180.29478 * 8 7 6 38 38 H 1.08006 * 119.62037 * 180.02562 * 10 9 8 39 39 H 1.07997 * 120.42230 * 180.02562 * 11 10 9 40 40 H 0.97002 * 120.00464 * 359.97438 * 14 12 2 41 41 H 1.09002 * 109.88192 * 336.74933 * 17 15 14 42 42 H 1.09000 * 109.88128 * 215.73785 * 17 15 14 43 43 H 0.97004 * 119.99606 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36956 * 142.96999 * 27 18 17 45 45 H 1.09001 * 110.36709 * 265.18192 * 27 18 17 46 46 H 1.08998 * 109.47124 * 61.44830 * 29 28 27 47 47 H 1.09000 * 109.46711 * 181.45182 * 29 28 27 48 48 H 1.08996 * 109.47179 * 301.45081 * 29 28 27 49 49 H 1.08997 * 109.47394 * 58.54326 * 30 28 27 50 50 H 1.08994 * 109.47153 * 178.54824 * 30 28 27 51 51 H 1.09004 * 109.47185 * 298.54805 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1831 2.2941 6 6 2.7002 -0.6282 3.4615 7 6 1.8129 -1.2036 4.3581 8 6 2.3083 -1.9452 5.4138 9 7 3.6075 -2.0992 5.5790 10 6 4.4804 -1.5620 4.7494 11 6 4.0589 -0.8122 3.6676 12 6 2.0323 -0.7106 -1.2304 13 8 2.6530 -1.7468 -1.1212 14 7 1.7920 -0.1944 -2.4519 15 6 2.2808 -0.8848 -3.6480 16 1 3.2565 -1.3343 -3.4634 17 6 1.2678 -1.9512 -4.1152 18 7 0.4431 -1.3425 -5.1691 19 6 -0.5603 -1.9688 -5.8590 20 1 -1.1104 -1.4323 -6.6179 21 6 -0.8704 -3.2934 -5.5830 22 7 -0.2004 -3.9471 -4.6578 23 14 -2.2397 -4.1476 -6.5236 24 1 -2.8335 -3.2012 -7.5018 25 1 -1.6868 -5.3221 -7.2448 26 1 -3.2869 -4.5990 -5.5723 27 6 0.8748 0.0543 -5.3596 28 6 2.3401 0.0883 -4.8582 29 6 3.2990 -0.4324 -5.9307 30 6 2.7343 1.4977 -4.4119 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.9320 0.9514 2.0450 35 1 1.2538 0.6549 2.5589 36 1 0.7478 -1.0775 4.2305 37 1 1.6235 -2.4006 6.1139 38 1 5.5371 -1.7103 4.9168 39 1 4.7787 -0.3751 2.9915 40 1 1.2954 0.6343 -2.5392 41 1 0.6370 -2.2545 -3.2796 42 1 1.7977 -2.8168 -4.5128 43 1 -0.4173 -4.8726 -4.4647 44 1 0.8283 0.3252 -6.4144 45 1 0.2539 0.7272 -4.7682 46 1 3.2388 0.2054 -6.8125 47 1 4.3177 -0.4218 -5.5432 48 1 3.0234 -1.4519 -6.2003 49 1 2.0637 1.8287 -3.6190 50 1 3.7590 1.4879 -4.0406 51 1 2.6610 2.1807 -5.2583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734150546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:10 Heat of formation + Delta-G solvation = -16.403191 kcal Electronic energy + Delta-G solvation = -31090.078600 eV Core-core repulsion = 26990.520524 eV Total energy + Delta-G solvation = -4099.558076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.43904 -39.94186 -38.52689 -37.24224 -33.92381 -33.64465 -33.06078 -31.44073 -31.12930 -30.68714 -28.05527 -27.10974 -26.82453 -25.64283 -24.38846 -23.69849 -23.07559 -22.22605 -20.58889 -19.78941 -18.80894 -17.57162 -17.09522 -16.72563 -16.68602 -16.47479 -15.82877 -15.52418 -15.28304 -14.69216 -14.60997 -14.05813 -14.01149 -13.90057 -13.82285 -13.76042 -13.31226 -13.21557 -12.89656 -12.54986 -12.41165 -12.16257 -12.03050 -12.00583 -11.76582 -11.68849 -11.40275 -11.35994 -11.08996 -10.99363 -10.79487 -10.37963 -10.23182 -10.09289 -10.00726 -9.96064 -9.86950 -9.72273 -9.65127 -9.37205 -9.22996 -8.62666 -8.44845 -6.82039 -5.67991 -3.03245 0.89500 0.91631 2.92868 3.04014 3.40402 3.45375 3.48607 3.59472 3.96200 4.24149 4.42718 4.46175 4.50561 4.73537 4.79983 4.87022 4.88564 4.95383 4.97384 5.05364 5.11096 5.24844 5.27472 5.37728 5.53531 5.53703 5.54564 5.58722 5.64178 5.71126 5.78131 5.87728 6.00681 6.05631 6.11681 6.13740 6.17574 6.21702 6.37744 6.44843 6.56554 6.59215 6.65800 6.72183 6.85677 6.95869 7.56725 7.66006 7.72968 7.82911 7.93454 8.26788 8.62116 9.22843 9.83645 10.48865 11.42325 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.002525 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.889498 B =11086.020568 C =12335.160390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.083 0.917 4 O -0.347 6.347 5 C 0.098 3.902 6 C -0.042 4.042 7 C -0.151 4.151 8 C 0.095 3.905 9 N -0.484 5.484 10 C 0.095 3.905 11 C -0.149 4.149 12 C 0.512 3.488 13 O -0.517 6.517 14 N -0.708 5.708 15 C 0.126 3.874 16 H 0.087 0.913 17 C 0.175 3.825 18 N -0.602 5.602 19 C -0.230 4.230 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.916 5.916 23 Si 0.910 3.090 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.144 3.856 28 C -0.089 4.089 29 C -0.126 4.126 30 C -0.131 4.131 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.394 0.606 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.252 0.748 44 H 0.040 0.960 45 H 0.015 0.985 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.513 14.636 14.068 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.100 0.900 4 O -0.265 6.265 5 C 0.021 3.979 6 C -0.051 4.051 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.061 4.061 11 C -0.169 4.169 12 C 0.296 3.704 13 O -0.392 6.392 14 N -0.362 5.362 15 C 0.022 3.978 16 H 0.105 0.895 17 C 0.050 3.950 18 N -0.329 5.329 19 C -0.358 4.358 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.563 5.563 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.018 3.982 28 C -0.090 4.090 29 C -0.183 4.183 30 C -0.189 4.189 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.229 0.771 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.032 0.968 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.201 12.953 14.848 20.978 hybrid contribution -1.476 0.601 -1.265 2.034 sum 5.725 13.553 13.584 20.024 Atomic orbital electron populations 1.22226 0.93299 1.04459 1.02833 1.21948 0.95312 0.95930 0.85661 0.89961 1.88162 1.86585 1.33324 1.18390 1.21402 0.99976 0.91669 0.84852 1.19977 0.93687 0.96728 0.94660 1.22098 1.01062 0.98189 0.95729 1.22771 0.91975 0.95308 0.96134 1.67659 1.03385 1.19558 1.28702 1.22774 0.99700 0.93124 0.90544 1.22106 0.95883 0.99910 0.99009 1.20123 0.80422 0.85770 0.84102 1.90737 1.39562 1.22545 1.86308 1.45954 1.57390 1.27492 1.05317 1.22506 0.99109 0.93822 0.82412 0.89522 1.21511 0.90555 0.91391 0.91563 1.44440 1.39284 1.06733 1.42426 1.19047 1.08489 0.93902 1.14399 0.90468 1.24819 0.99651 0.96836 0.99058 1.69979 1.42207 1.10358 1.33789 0.86082 0.81435 0.79533 0.78912 1.20591 1.21782 1.21837 1.21618 0.90401 0.88347 0.97855 1.22055 0.97542 0.94179 0.95273 1.21595 0.97200 1.02415 0.97120 1.21681 1.00715 0.95872 1.00615 0.91616 0.90625 0.90610 0.91872 0.91777 0.84554 0.82566 0.82554 0.84560 0.77100 0.93344 0.92873 0.93728 0.94133 0.96784 0.92807 0.93387 0.91237 0.93143 0.92835 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.48 37.16 0.35 -1.60 16 2 C 0.07 0.92 3.13 -27.88 -0.09 0.84 16 3 H 0.08 0.74 7.79 -51.93 -0.40 0.34 16 4 O -0.35 -4.89 9.51 -55.09 -0.52 -5.41 16 5 C 0.10 0.95 5.92 36.01 0.21 1.16 16 6 C -0.04 -0.44 5.55 -104.32 -0.58 -1.02 16 7 C -0.15 -1.47 9.82 -39.44 -0.39 -1.86 16 8 C 0.09 0.94 11.18 -17.55 -0.20 0.75 16 9 N -0.48 -5.56 10.36 -13.25 -0.14 -5.70 16 10 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 11 C -0.15 -1.49 9.82 -39.44 -0.39 -1.88 16 12 C 0.51 8.80 7.18 -10.99 -0.08 8.72 16 13 O -0.52 -11.50 16.24 -14.30 -0.23 -11.73 16 14 N -0.71 -11.31 4.52 -51.90 -0.23 -11.54 16 15 C 0.13 2.36 2.52 -65.96 -0.17 2.20 16 16 H 0.09 1.71 7.61 -51.93 -0.40 1.32 16 17 C 0.18 4.28 4.72 -3.07 -0.01 4.27 16 18 N -0.60 -14.80 3.38 -170.07 -0.58 -15.37 16 19 C -0.23 -6.29 10.28 -15.06 -0.15 -6.45 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -27.38 10.31 55.49 0.57 -26.81 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 C 0.14 2.77 6.15 -2.53 -0.02 2.75 16 28 C -0.09 -1.42 0.83 -152.22 -0.13 -1.55 16 29 C -0.13 -1.96 8.60 37.16 0.32 -1.64 16 30 C -0.13 -1.58 8.35 37.16 0.31 -1.27 16 31 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 32 H 0.07 0.81 7.92 -51.92 -0.41 0.39 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 35 H 0.06 0.48 7.83 -51.93 -0.41 0.08 16 36 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.16 1.15 8.06 -52.48 -0.42 0.72 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.39 5.19 6.60 -40.82 -0.27 4.92 16 41 H 0.05 1.37 7.41 -51.93 -0.38 0.98 16 42 H 0.05 1.48 7.37 -51.93 -0.38 1.10 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 45 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.07 1.29 7.81 -51.93 -0.41 0.89 16 49 H 0.05 0.54 6.18 -51.93 -0.32 0.22 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 413.00 15.07 6.22 6.22 Total: -1.00 -35.70 413.00 -9.62 -45.32 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.39 Total: 3.96 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.29 Total: 3.88 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.37 Total: -59.42 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.76 Total: -17.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.70 -9.62 -45.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734150546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.915 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds