Wall clock time and date at job start Wed Apr 1 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47465 * 2 1 4 4 O 1.42907 * 109.47158 * 119.99598 * 2 1 3 5 5 C 1.42903 * 113.99992 * 270.00164 * 4 2 1 6 6 C 1.50699 * 109.46835 * 179.97438 * 5 4 2 7 7 C 1.38647 * 120.79011 * 269.71722 * 6 5 4 8 8 C 1.38205 * 119.15944 * 179.75737 * 7 6 5 9 9 N 1.31864 * 120.76527 * 0.53659 * 8 7 6 10 10 C 1.31866 * 121.72748 * 359.73802 * 9 8 7 11 11 C 1.38205 * 120.76408 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47194 * 239.99301 * 2 1 3 13 13 O 1.21280 * 119.99909 * 244.99786 * 12 2 1 14 14 N 1.34773 * 119.99682 * 65.00689 * 12 2 1 15 15 C 1.46501 * 119.99782 * 179.97438 * 14 12 2 16 16 H 1.09002 * 110.78172 * 323.20910 * 15 14 12 17 17 C 1.54325 * 110.72113 * 86.45299 * 15 14 12 18 18 N 1.47018 * 107.40412 * 96.24493 * 17 15 14 19 19 C 1.36936 * 125.64899 * 178.89496 * 18 17 15 20 20 H 1.08004 * 120.00261 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00145 * 359.97438 * 19 18 17 22 22 N 1.31617 * 119.99550 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00112 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47291 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46906 * 120.00302 * 23 21 19 26 26 H 1.48501 * 109.47001 * 239.99832 * 23 21 19 27 27 C 1.47426 * 108.70517 * 358.86539 * 18 17 15 28 28 C 1.54914 * 104.82992 * 24.12623 * 27 18 17 29 29 C 1.53000 * 111.00263 * 81.06932 * 28 27 18 30 30 C 1.52998 * 111.00210 * 204.88127 * 28 27 18 31 31 H 1.08994 * 109.47279 * 300.00519 * 1 2 3 32 32 H 1.09008 * 109.46751 * 60.00307 * 1 2 3 33 33 H 1.08999 * 109.47123 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46853 * 299.99632 * 5 4 2 35 35 H 1.09002 * 109.47288 * 59.99706 * 5 4 2 36 36 H 1.08003 * 120.41898 * 0.02562 * 7 6 5 37 37 H 1.08007 * 119.61536 * 180.29478 * 8 7 6 38 38 H 1.08006 * 119.62037 * 180.02562 * 10 9 8 39 39 H 1.07997 * 120.42230 * 180.02562 * 11 10 9 40 40 H 0.97002 * 120.00464 * 359.97438 * 14 12 2 41 41 H 1.09002 * 109.88192 * 336.74933 * 17 15 14 42 42 H 1.09000 * 109.88128 * 215.73785 * 17 15 14 43 43 H 0.97004 * 119.99606 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36956 * 142.96999 * 27 18 17 45 45 H 1.09001 * 110.36709 * 265.18192 * 27 18 17 46 46 H 1.08998 * 109.47124 * 61.44830 * 29 28 27 47 47 H 1.09000 * 109.46711 * 181.45182 * 29 28 27 48 48 H 1.08996 * 109.47179 * 301.45081 * 29 28 27 49 49 H 1.08997 * 109.47394 * 58.54326 * 30 28 27 50 50 H 1.08994 * 109.47153 * 178.54824 * 30 28 27 51 51 H 1.09004 * 109.47185 * 298.54805 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1831 2.2941 6 6 2.7002 -0.6282 3.4615 7 6 1.8129 -1.2036 4.3581 8 6 2.3083 -1.9452 5.4138 9 7 3.6075 -2.0992 5.5790 10 6 4.4804 -1.5620 4.7494 11 6 4.0589 -0.8122 3.6676 12 6 2.0323 -0.7106 -1.2304 13 8 2.6530 -1.7468 -1.1212 14 7 1.7920 -0.1944 -2.4519 15 6 2.2808 -0.8848 -3.6480 16 1 3.2565 -1.3343 -3.4634 17 6 1.2678 -1.9512 -4.1152 18 7 0.4431 -1.3425 -5.1691 19 6 -0.5603 -1.9688 -5.8590 20 1 -1.1104 -1.4323 -6.6179 21 6 -0.8704 -3.2934 -5.5830 22 7 -0.2004 -3.9471 -4.6578 23 14 -2.2397 -4.1476 -6.5236 24 1 -2.8335 -3.2012 -7.5018 25 1 -1.6868 -5.3221 -7.2448 26 1 -3.2869 -4.5990 -5.5723 27 6 0.8748 0.0543 -5.3596 28 6 2.3401 0.0883 -4.8582 29 6 3.2990 -0.4324 -5.9307 30 6 2.7343 1.4977 -4.4119 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.9320 0.9514 2.0450 35 1 1.2538 0.6549 2.5589 36 1 0.7478 -1.0775 4.2305 37 1 1.6235 -2.4006 6.1139 38 1 5.5371 -1.7103 4.9168 39 1 4.7787 -0.3751 2.9915 40 1 1.2954 0.6343 -2.5392 41 1 0.6370 -2.2545 -3.2796 42 1 1.7977 -2.8168 -4.5128 43 1 -0.4173 -4.8726 -4.4647 44 1 0.8283 0.3252 -6.4144 45 1 0.2539 0.7272 -4.7682 46 1 3.2388 0.2054 -6.8125 47 1 4.3177 -0.4218 -5.5432 48 1 3.0234 -1.4519 -6.2003 49 1 2.0637 1.8287 -3.6190 50 1 3.7590 1.4879 -4.0406 51 1 2.6610 2.1807 -5.2583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734150546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:09 Heat of formation + Delta-G solvation = -40.451969 kcal Electronic energy + Delta-G solvation = -31091.121433 eV Core-core repulsion = 26990.520524 eV Total energy + Delta-G solvation = -4100.600909 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43123 -41.07471 -39.81751 -38.46706 -35.71149 -34.71950 -34.28794 -32.60434 -32.16123 -32.12860 -29.69161 -28.04907 -27.86878 -27.40403 -25.72316 -24.55619 -24.41175 -22.97039 -22.27879 -21.28765 -20.18036 -18.69028 -18.58225 -18.14626 -17.51262 -17.43117 -16.96508 -16.59899 -16.55118 -16.29401 -15.77214 -15.62189 -15.39255 -15.09903 -14.80180 -14.75840 -14.54487 -14.23721 -14.07680 -13.78424 -13.61338 -13.44330 -13.35549 -13.13972 -12.99729 -12.95757 -12.84040 -12.72776 -12.56204 -12.50262 -12.28189 -12.07315 -11.85062 -11.71524 -11.49307 -11.30667 -11.06598 -10.77763 -10.75244 -10.48072 -10.45810 -10.09601 -9.99497 -8.88534 -7.83208 -5.19939 0.13328 0.19111 1.43245 1.44423 1.54837 1.61446 1.92977 2.48631 2.70991 3.10433 3.35156 3.49304 3.57205 3.63426 3.72670 3.77061 3.79976 3.93851 3.96878 4.07179 4.08877 4.11841 4.19913 4.39570 4.40913 4.44033 4.53191 4.65556 4.68424 4.70068 4.79168 4.86873 4.87718 4.90296 4.97577 4.98221 5.06117 5.14709 5.18623 5.19642 5.32334 5.34400 5.37721 5.46921 5.58056 5.71563 5.74770 5.76589 6.03973 6.17924 6.62348 6.98957 7.08231 7.31720 7.78771 8.42715 9.25769 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.002525 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.889498 B =11086.020568 C =12335.160390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.082 3.918 3 H 0.133 0.867 4 O -0.384 6.384 5 C 0.094 3.906 6 C -0.061 4.061 7 C -0.157 4.157 8 C 0.082 3.918 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.158 4.158 12 C 0.503 3.497 13 O -0.579 6.579 14 N -0.694 5.694 15 C 0.139 3.861 16 H 0.072 0.928 17 C 0.194 3.806 18 N -0.620 5.620 19 C -0.232 4.232 20 H 0.089 0.911 21 C -0.072 4.072 22 N -0.954 5.954 23 Si 0.976 3.024 24 H -0.259 1.259 25 H -0.297 1.297 26 H -0.297 1.297 27 C 0.137 3.863 28 C -0.073 4.073 29 C -0.125 4.125 30 C -0.124 4.124 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.177 0.823 39 H 0.151 0.849 40 H 0.412 0.588 41 H -0.002 1.002 42 H 0.000 1.000 43 H 0.241 0.759 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.026 0.974 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 18.903 13.976 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.022 3.978 3 H 0.151 0.849 4 O -0.303 6.303 5 C 0.019 3.981 6 C -0.069 4.069 7 C -0.176 4.176 8 C -0.074 4.074 9 N -0.221 5.221 10 C -0.074 4.074 11 C -0.178 4.178 12 C 0.290 3.710 13 O -0.457 6.457 14 N -0.348 5.348 15 C 0.033 3.967 16 H 0.090 0.910 17 C 0.068 3.932 18 N -0.346 5.346 19 C -0.361 4.361 20 H 0.107 0.893 21 C -0.265 4.265 22 N -0.603 5.603 23 Si 0.805 3.195 24 H -0.183 1.183 25 H -0.225 1.225 26 H -0.224 1.224 27 C 0.013 3.987 28 C -0.074 4.074 29 C -0.182 4.182 30 C -0.182 4.182 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.173 0.827 37 H 0.195 0.805 38 H 0.194 0.806 39 H 0.168 0.832 40 H 0.251 0.749 41 H 0.016 0.984 42 H 0.018 0.982 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.855 17.320 14.738 23.753 hybrid contribution -1.357 -0.726 -1.237 1.974 sum 5.498 16.595 13.502 22.089 Atomic orbital electron populations 1.22231 0.92386 1.02611 1.05144 1.21964 0.95648 0.97135 0.83073 0.84928 1.88125 1.86887 1.35608 1.19659 1.21656 1.02027 0.91323 0.83111 1.20297 0.94076 0.97232 0.95273 1.22369 1.02065 0.97761 0.95439 1.23197 0.91979 0.95414 0.96798 1.67679 1.04270 1.20470 1.29643 1.23168 1.00644 0.93012 0.90530 1.22356 0.96349 0.99906 0.99183 1.21194 0.79065 0.85112 0.85659 1.90709 1.42384 1.25390 1.87255 1.45753 1.57077 1.27612 1.04321 1.22071 0.96373 0.93572 0.84730 0.90958 1.21045 0.90404 0.92040 0.89730 1.44688 1.38734 1.09124 1.42058 1.19510 1.08488 0.94114 1.13980 0.89344 1.25686 1.02405 0.97964 1.00430 1.70264 1.44194 1.09913 1.35963 0.85036 0.78426 0.78334 0.77734 1.18287 1.22451 1.22406 1.21922 0.92514 0.85417 0.98865 1.22029 0.95724 0.96239 0.93441 1.21602 0.98174 1.00332 0.98128 1.21666 1.01867 0.92529 1.02103 0.87945 0.89640 0.94516 0.89630 0.89123 0.82715 0.80517 0.80623 0.83164 0.74944 0.98390 0.98203 0.94957 0.93344 0.94649 0.90434 0.91389 0.95496 0.91400 0.91467 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 9.48 71.98 0.68 -2.76 16 2 C 0.08 1.90 3.13 29.85 0.09 1.99 16 3 H 0.13 1.72 7.79 -2.39 -0.02 1.70 16 4 O -0.38 -10.28 9.51 -129.99 -1.24 -11.52 16 5 C 0.09 1.57 5.92 71.24 0.42 1.99 16 6 C -0.06 -1.19 5.55 -19.67 -0.11 -1.30 16 7 C -0.16 -2.88 9.82 22.36 0.22 -2.66 16 8 C 0.08 1.60 11.18 84.68 0.95 2.55 16 9 N -0.51 -11.68 10.36 -195.84 -2.03 -13.70 16 10 C 0.08 1.64 11.18 84.68 0.95 2.59 16 11 C -0.16 -3.04 9.82 22.36 0.22 -2.82 16 12 C 0.50 17.24 7.18 87.66 0.63 17.87 16 13 O -0.58 -26.98 16.24 15.96 0.26 -26.72 16 14 N -0.69 -21.44 4.52 -436.50 -1.97 -23.41 16 15 C 0.14 5.27 2.52 46.27 0.12 5.38 16 16 H 0.07 2.98 7.61 -2.39 -0.02 2.96 16 17 C 0.19 10.09 4.72 86.73 0.41 10.50 16 18 N -0.62 -31.08 3.38 -691.97 -2.34 -33.42 16 19 C -0.23 -12.88 10.28 84.03 0.86 -12.02 16 20 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 21 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 22 N -0.95 -60.75 10.31 21.65 0.22 -60.53 16 23 Si 0.98 46.94 29.55 68.60 2.03 48.96 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 27 C 0.14 5.01 6.15 86.86 0.53 5.55 16 28 C -0.07 -2.18 0.83 -50.70 -0.04 -2.23 16 29 C -0.12 -3.72 8.60 71.98 0.62 -3.10 16 30 C -0.12 -2.38 8.35 71.98 0.60 -1.78 16 31 H 0.10 1.38 7.87 -2.39 -0.02 1.36 16 32 H 0.08 1.58 7.92 -2.38 -0.02 1.56 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.02 8.05 -2.39 -0.02 1.00 16 35 H 0.09 1.00 7.83 -2.39 -0.02 0.98 16 36 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 39 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.41 9.57 6.60 -92.71 -0.61 8.96 16 41 H 0.00 -0.13 7.41 -2.39 -0.02 -0.15 16 42 H 0.00 -0.01 7.37 -2.39 -0.02 -0.03 16 43 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 45 H 0.04 1.18 8.04 -2.39 -0.02 1.16 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.03 1.01 7.81 -2.39 -0.02 0.99 16 49 H 0.07 1.08 6.18 -2.39 -0.01 1.07 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -86.79 413.00 2.86 -83.94 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.30 Total: 20.42 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 7.62 Total: 15.98 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -6.12 Total: -131.07 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.98 Total: -38.24 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -86.79 2.86 -83.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734150546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.487 kcal (2) G-P(sol) polarization free energy of solvation -86.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds